HEADER OXIDOREDUCTASE 26-SEP-15 5DZS TITLE 1.5 ANGSTROM CRYSTAL STRUCTURE OF SHIKIMATE DEHYDROGENASE 1 FROM TITLE 2 PEPTOCLOSTRIDIUM DIFFICILE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHIKIMATE DEHYDROGENASE (NADP(+)); COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.25; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PEPTOCLOSTRIDIUM DIFFICILE (STRAIN 630); SOURCE 3 ORGANISM_TAXID: 272563; SOURCE 4 STRAIN: 630; SOURCE 5 GENE: AROE1, CD630_18370; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG28 KEYWDS SHIKIMATE DEHYDROGENASE 1, CSGID, STRUCTURAL GENOMICS, CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,Z.WAWRZAK,L.SHUVALOVA,I.DUBROVSKA,K.FLORES,S.GRIMSHAW, AUTHOR 2 K.KWON,W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS AUTHOR 3 DISEASES (CSGID) REVDAT 2 27-SEP-23 5DZS 1 REMARK REVDAT 1 07-OCT-15 5DZS 0 JRNL AUTH G.MINASOV,Z.WAWRZAK,L.SHUVALOVA,I.DUBROVSKA,K.FLORES, JRNL AUTH 2 S.GRIMSHAW,K.KWON,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 1.5 ANGSTROM CRYSTAL STRUCTURE OF SHIKIMATE DEHYDROGENASE 1 JRNL TITL 2 FROM PEPTOCLOSTRIDIUM DIFFICILE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 77919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4078 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5604 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 289 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4200 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 423 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : -0.91000 REMARK 3 B33 (A**2) : 0.71000 REMARK 3 B12 (A**2) : 0.20000 REMARK 3 B13 (A**2) : -0.15000 REMARK 3 B23 (A**2) : -0.46000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.641 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4758 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4704 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6459 ; 1.373 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10895 ; 0.754 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 621 ; 3.087 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;32.257 ;25.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 929 ; 9.867 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.564 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 719 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5483 ; 0.020 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1043 ; 0.016 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2376 ; 1.728 ; 2.275 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2375 ; 1.727 ; 2.273 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3033 ; 2.715 ; 3.391 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3034 ; 2.715 ; 3.394 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2382 ; 2.505 ; 2.598 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2371 ; 2.449 ; 2.591 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3409 ; 3.810 ; 3.771 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5806 ; 7.646 ;19.947 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5553 ; 7.463 ;19.051 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9746 31.9868 22.3658 REMARK 3 T TENSOR REMARK 3 T11: 0.0292 T22: 0.0080 REMARK 3 T33: 0.0088 T12: -0.0019 REMARK 3 T13: 0.0046 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.9946 L22: 1.2726 REMARK 3 L33: 0.9003 L12: -0.0379 REMARK 3 L13: -0.0983 L23: -0.0003 REMARK 3 S TENSOR REMARK 3 S11: 0.0232 S12: -0.0692 S13: -0.0074 REMARK 3 S21: 0.0975 S22: -0.0269 S23: -0.0411 REMARK 3 S31: -0.0686 S32: 0.0022 S33: 0.0038 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 215 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6881 42.9796 44.5351 REMARK 3 T TENSOR REMARK 3 T11: 0.2203 T22: 0.2630 REMARK 3 T33: 0.0525 T12: -0.0093 REMARK 3 T13: -0.0120 T23: -0.0842 REMARK 3 L TENSOR REMARK 3 L11: 4.2738 L22: 3.5394 REMARK 3 L33: 3.4099 L12: -1.9774 REMARK 3 L13: 1.3090 L23: -0.8296 REMARK 3 S TENSOR REMARK 3 S11: 0.2362 S12: -0.2652 S13: 0.3504 REMARK 3 S21: 0.4569 S22: -0.3079 S23: -0.1607 REMARK 3 S31: -0.1208 S32: 0.1045 S33: 0.0717 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 216 A 270 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7911 36.4171 32.3760 REMARK 3 T TENSOR REMARK 3 T11: 0.0654 T22: 0.1723 REMARK 3 T33: 0.0781 T12: -0.0065 REMARK 3 T13: 0.0315 T23: -0.0390 REMARK 3 L TENSOR REMARK 3 L11: 1.0907 L22: 1.4334 REMARK 3 L33: 1.3150 L12: 0.2749 REMARK 3 L13: 0.4609 L23: -0.4494 REMARK 3 S TENSOR REMARK 3 S11: 0.1000 S12: -0.3548 S13: 0.1911 REMARK 3 S21: 0.2063 S22: -0.0057 S23: 0.1604 REMARK 3 S31: -0.1145 S32: -0.1996 S33: -0.0943 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 104 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5359 59.5468 9.9114 REMARK 3 T TENSOR REMARK 3 T11: 0.0208 T22: 0.0115 REMARK 3 T33: 0.0295 T12: 0.0056 REMARK 3 T13: 0.0215 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.7070 L22: 2.0778 REMARK 3 L33: 1.2331 L12: 0.1469 REMARK 3 L13: 0.1154 L23: 0.1478 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: 0.0544 S13: -0.0036 REMARK 3 S21: -0.1021 S22: -0.0414 S23: -0.1023 REMARK 3 S31: 0.0557 S32: 0.0184 S33: 0.0123 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 105 B 206 REMARK 3 ORIGIN FOR THE GROUP (A): 28.3981 47.6430 -12.8262 REMARK 3 T TENSOR REMARK 3 T11: 0.2389 T22: 0.1581 REMARK 3 T33: 0.0626 T12: 0.0210 REMARK 3 T13: 0.0491 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 6.1187 L22: 2.7051 REMARK 3 L33: 3.7023 L12: 2.1842 REMARK 3 L13: -2.1493 L23: -0.6998 REMARK 3 S TENSOR REMARK 3 S11: 0.2681 S12: 0.2154 S13: -0.4283 REMARK 3 S21: -0.3610 S22: -0.2844 S23: -0.2714 REMARK 3 S31: 0.0451 S32: 0.1315 S33: 0.0163 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 207 B 270 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0202 54.5450 -2.7947 REMARK 3 T TENSOR REMARK 3 T11: 0.1204 T22: 0.1533 REMARK 3 T33: 0.0402 T12: 0.0311 REMARK 3 T13: -0.0205 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.8560 L22: 1.9384 REMARK 3 L33: 1.8910 L12: 0.1352 REMARK 3 L13: -0.2413 L23: 0.2810 REMARK 3 S TENSOR REMARK 3 S11: 0.0895 S12: 0.3746 S13: 0.0389 REMARK 3 S21: -0.3893 S22: -0.0521 S23: 0.1586 REMARK 3 S31: -0.2496 S32: -0.2937 S33: -0.0374 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DZS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000214085. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82004 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : 0.03800 REMARK 200 FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.45400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: 3FBT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 10.6 MG/ML, 0.01M TRIS-HCL REMARK 280 (PH 8.3); SCREEN: CLASSICS II (F3), 0.064M SODIUM CITRATE (PH REMARK 280 7.0), 0.1M HEPES (PH 7.0), 10% (W/V) PEG 5000 MME; CRYO: 1:1 (V/ REMARK 280 V), 50% SUCROSE : SCREEN SOLUTION., VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -0.74729 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -47.04707 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 153 REMARK 465 ASP A 154 REMARK 465 LYS A 155 REMARK 465 LYS A 156 REMARK 465 LEU A 157 REMARK 465 LEU A 158 REMARK 465 ASN A 159 REMARK 465 GLU A 271 REMARK 465 ASN A 272 REMARK 465 LEU A 273 REMARK 465 TYR A 274 REMARK 465 PHE A 275 REMARK 465 GLN A 276 REMARK 465 GLU B 271 REMARK 465 ASN B 272 REMARK 465 LEU B 273 REMARK 465 TYR B 274 REMARK 465 PHE B 275 REMARK 465 GLN B 276 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 61 -162.94 -121.86 REMARK 500 TYR A 187 -73.41 0.29 REMARK 500 PRO A 213 -48.24 -19.30 REMARK 500 LEU A 269 -67.06 -108.64 REMARK 500 HIS B 13 41.98 -104.78 REMARK 500 SER B 14 134.48 -32.13 REMARK 500 THR B 61 -169.72 -124.19 REMARK 500 ASP B 153 -127.55 38.57 REMARK 500 TYR B 187 -56.13 -13.73 REMARK 500 PRO B 188 -70.89 -72.25 REMARK 500 GLU B 215 129.45 70.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP90166 RELATED DB: TARGETTRACK DBREF 5DZS A 1 269 UNP Q187E7 Q187E7_PEPD6 1 269 DBREF 5DZS B 1 269 UNP Q187E7 Q187E7_PEPD6 1 269 SEQADV 5DZS GLY A 270 UNP Q187E7 EXPRESSION TAG SEQADV 5DZS GLU A 271 UNP Q187E7 EXPRESSION TAG SEQADV 5DZS ASN A 272 UNP Q187E7 EXPRESSION TAG SEQADV 5DZS LEU A 273 UNP Q187E7 EXPRESSION TAG SEQADV 5DZS TYR A 274 UNP Q187E7 EXPRESSION TAG SEQADV 5DZS PHE A 275 UNP Q187E7 EXPRESSION TAG SEQADV 5DZS GLN A 276 UNP Q187E7 EXPRESSION TAG SEQADV 5DZS GLY B 270 UNP Q187E7 EXPRESSION TAG SEQADV 5DZS GLU B 271 UNP Q187E7 EXPRESSION TAG SEQADV 5DZS ASN B 272 UNP Q187E7 EXPRESSION TAG SEQADV 5DZS LEU B 273 UNP Q187E7 EXPRESSION TAG SEQADV 5DZS TYR B 274 UNP Q187E7 EXPRESSION TAG SEQADV 5DZS PHE B 275 UNP Q187E7 EXPRESSION TAG SEQADV 5DZS GLN B 276 UNP Q187E7 EXPRESSION TAG SEQRES 1 A 276 MET ASN PHE PHE GLY LEU VAL GLY GLU LYS LEU SER HIS SEQRES 2 A 276 SER VAL SER PRO GLN ILE HIS LYS ARG VAL PHE GLU ILE SEQRES 3 A 276 LEU ASN ILE GLU SER ALA TYR LYS ASN PHE GLU ILE SER SEQRES 4 A 276 LYS GLU ASP ILE SER LYS LEU ASP GLY ALA ILE LYS LEU SEQRES 5 A 276 LEU GLY ILE GLN GLY VAL ASN VAL THR VAL PRO TYR LYS SEQRES 6 A 276 GLU ARG ILE MET LYS TYR LEU ASP PHE ILE SER PRO GLU SEQRES 7 A 276 ALA LYS ARG ILE GLY ALA VAL ASN THR ILE LEU LEU ARG SEQRES 8 A 276 GLU ASN MET LEU TYR GLY TYR ASN THR ASP TYR PHE GLY SEQRES 9 A 276 LEU ASP SER MET PHE LYS MET ALA ASN ILE ASP VAL GLN SEQRES 10 A 276 GLY LYS VAL ALA VAL ILE LEU GLY THR GLY GLY ALA SER SEQRES 11 A 276 LYS ALA ALA LEU THR TYR PHE ILE ASP SER GLY ILE GLU SEQRES 12 A 276 LYS LEU TYR VAL SER THR ARG LYS LYS ASP ASP LYS LYS SEQRES 13 A 276 LEU LEU ASN SER LYS ALA ILE LEU ILE ASP TYR GLU GLU SEQRES 14 A 276 LEU LYS HIS ILE LYS GLY ASP ILE ILE LEU ASN ALA THR SEQRES 15 A 276 PRO VAL GLY MET TYR PRO ASN VAL GLY ILE SER PRO VAL SEQRES 16 A 276 SER LYS SER ILE ILE GLN ASN PHE ASP ILE LEU ILE ASP SEQRES 17 A 276 LEU ILE TYR ASN PRO GLY GLU THR GLU PHE LEU ARG ILE SEQRES 18 A 276 GLY ASN SER MET GLY LYS LYS THR CYS ASP GLY LEU TYR SEQRES 19 A 276 MET LEU VAL GLY GLN ALA ILE LYS SER GLN GLU ILE TRP SEQRES 20 A 276 GLN ASP THR LYS ILE ASP ASN SER ILE LEU ASP VAL ILE SEQRES 21 A 276 TYR ASN GLU LEU LYS LEU GLU PHE LEU GLY GLU ASN LEU SEQRES 22 A 276 TYR PHE GLN SEQRES 1 B 276 MET ASN PHE PHE GLY LEU VAL GLY GLU LYS LEU SER HIS SEQRES 2 B 276 SER VAL SER PRO GLN ILE HIS LYS ARG VAL PHE GLU ILE SEQRES 3 B 276 LEU ASN ILE GLU SER ALA TYR LYS ASN PHE GLU ILE SER SEQRES 4 B 276 LYS GLU ASP ILE SER LYS LEU ASP GLY ALA ILE LYS LEU SEQRES 5 B 276 LEU GLY ILE GLN GLY VAL ASN VAL THR VAL PRO TYR LYS SEQRES 6 B 276 GLU ARG ILE MET LYS TYR LEU ASP PHE ILE SER PRO GLU SEQRES 7 B 276 ALA LYS ARG ILE GLY ALA VAL ASN THR ILE LEU LEU ARG SEQRES 8 B 276 GLU ASN MET LEU TYR GLY TYR ASN THR ASP TYR PHE GLY SEQRES 9 B 276 LEU ASP SER MET PHE LYS MET ALA ASN ILE ASP VAL GLN SEQRES 10 B 276 GLY LYS VAL ALA VAL ILE LEU GLY THR GLY GLY ALA SER SEQRES 11 B 276 LYS ALA ALA LEU THR TYR PHE ILE ASP SER GLY ILE GLU SEQRES 12 B 276 LYS LEU TYR VAL SER THR ARG LYS LYS ASP ASP LYS LYS SEQRES 13 B 276 LEU LEU ASN SER LYS ALA ILE LEU ILE ASP TYR GLU GLU SEQRES 14 B 276 LEU LYS HIS ILE LYS GLY ASP ILE ILE LEU ASN ALA THR SEQRES 15 B 276 PRO VAL GLY MET TYR PRO ASN VAL GLY ILE SER PRO VAL SEQRES 16 B 276 SER LYS SER ILE ILE GLN ASN PHE ASP ILE LEU ILE ASP SEQRES 17 B 276 LEU ILE TYR ASN PRO GLY GLU THR GLU PHE LEU ARG ILE SEQRES 18 B 276 GLY ASN SER MET GLY LYS LYS THR CYS ASP GLY LEU TYR SEQRES 19 B 276 MET LEU VAL GLY GLN ALA ILE LYS SER GLN GLU ILE TRP SEQRES 20 B 276 GLN ASP THR LYS ILE ASP ASN SER ILE LEU ASP VAL ILE SEQRES 21 B 276 TYR ASN GLU LEU LYS LEU GLU PHE LEU GLY GLU ASN LEU SEQRES 22 B 276 TYR PHE GLN HET SO4 A 301 5 HET SO4 B 301 5 HET SO4 B 302 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *423(H2 O) HELIX 1 AA1 VAL A 15 ASN A 28 1 14 HELIX 2 AA2 SER A 39 SER A 44 5 6 HELIX 3 AA3 LYS A 45 GLY A 54 1 10 HELIX 4 AA4 GLU A 66 LEU A 72 5 7 HELIX 5 AA5 SER A 76 GLY A 83 1 8 HELIX 6 AA6 THR A 100 ALA A 112 1 13 HELIX 7 AA7 GLY A 127 SER A 140 1 14 HELIX 8 AA8 ASP A 166 LYS A 171 1 6 HELIX 9 AA9 MET A 186 VAL A 190 5 5 HELIX 10 AB1 SER A 196 GLN A 201 1 6 HELIX 11 AB2 THR A 216 MET A 225 1 10 HELIX 12 AB3 GLY A 232 ASP A 249 1 18 HELIX 13 AB4 ASN A 254 GLY A 270 1 17 HELIX 14 AB5 VAL B 15 ASN B 28 1 14 HELIX 15 AB6 SER B 39 SER B 44 5 6 HELIX 16 AB7 LYS B 45 GLY B 54 1 10 HELIX 17 AB8 ILE B 68 LEU B 72 5 5 HELIX 18 AB9 SER B 76 GLY B 83 1 8 HELIX 19 AC1 THR B 100 ALA B 112 1 13 HELIX 20 AC2 GLY B 127 SER B 140 1 14 HELIX 21 AC3 GLU B 168 ILE B 173 5 6 HELIX 22 AC4 SER B 196 GLN B 201 1 6 HELIX 23 AC5 THR B 216 MET B 225 1 10 HELIX 24 AC6 GLY B 232 ASP B 249 1 18 HELIX 25 AC7 SER B 255 LEU B 269 1 15 SHEET 1 AA1 6 SER A 31 GLU A 37 0 SHEET 2 AA1 6 ASN A 2 GLY A 8 1 N LEU A 6 O PHE A 36 SHEET 3 AA1 6 GLY A 57 VAL A 60 1 O ASN A 59 N VAL A 7 SHEET 4 AA1 6 THR A 87 ARG A 91 -1 O ILE A 88 N VAL A 58 SHEET 5 AA1 6 MET A 94 TYR A 98 -1 O TYR A 98 N THR A 87 SHEET 6 AA1 6 PHE A 74 ILE A 75 1 N PHE A 74 O GLY A 97 SHEET 1 AA2 6 ILE A 163 ILE A 165 0 SHEET 2 AA2 6 LYS A 144 SER A 148 1 N LEU A 145 O ILE A 163 SHEET 3 AA2 6 VAL A 120 LEU A 124 1 N ILE A 123 O SER A 148 SHEET 4 AA2 6 ILE A 177 ASN A 180 1 O LEU A 179 N LEU A 124 SHEET 5 AA2 6 ILE A 205 ASP A 208 1 O ILE A 207 N ASN A 180 SHEET 6 AA2 6 LYS A 228 CYS A 230 1 O LYS A 228 N LEU A 206 SHEET 1 AA3 6 SER B 31 GLU B 37 0 SHEET 2 AA3 6 ASN B 2 GLY B 8 1 N LEU B 6 O PHE B 36 SHEET 3 AA3 6 GLY B 57 VAL B 60 1 O ASN B 59 N VAL B 7 SHEET 4 AA3 6 THR B 87 ARG B 91 -1 O ILE B 88 N VAL B 58 SHEET 5 AA3 6 MET B 94 TYR B 98 -1 O TYR B 98 N THR B 87 SHEET 6 AA3 6 PHE B 74 ILE B 75 1 N PHE B 74 O GLY B 97 SHEET 1 AA4 6 ILE B 163 ASP B 166 0 SHEET 2 AA4 6 LYS B 144 THR B 149 1 N LEU B 145 O ILE B 163 SHEET 3 AA4 6 VAL B 120 LEU B 124 1 N ILE B 123 O SER B 148 SHEET 4 AA4 6 ILE B 177 ASN B 180 1 O LEU B 179 N LEU B 124 SHEET 5 AA4 6 ILE B 205 ASP B 208 1 O ILE B 207 N ASN B 180 SHEET 6 AA4 6 LYS B 228 CYS B 230 1 O LYS B 228 N LEU B 206 CISPEP 1 VAL A 62 PRO A 63 0 1.35 CISPEP 2 VAL A 62 PRO A 63 0 -1.80 CISPEP 3 VAL B 62 PRO B 63 0 2.43 SITE 1 AC1 10 VAL A 62 PRO A 63 TYR A 64 LYS A 65 SITE 2 AC1 10 GLU A 66 GLY A 127 GLY A 128 HOH A 425 SITE 3 AC1 10 HOH A 429 HOH A 445 SITE 1 AC2 7 VAL B 62 PRO B 63 TYR B 64 LYS B 65 SITE 2 AC2 7 GLU B 66 GLY B 128 HOH B 419 SITE 1 AC3 7 GLY B 125 THR B 126 SER B 148 THR B 149 SITE 2 AC3 7 ARG B 150 TYR B 167 HOH B 417 CRYST1 41.221 47.053 74.736 77.98 76.44 89.09 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024259 -0.000386 -0.005901 0.00000 SCALE2 0.000000 0.021255 -0.004576 0.00000 SCALE3 0.000000 0.000000 0.014079 0.00000