HEADER HYDROLASE, RNA BINDING PROTEIN/RNA 28-SEP-15 5E02 TITLE STRUCTURE OF RNA HELICASE FRH A CRITICAL COMPONENT OF THE NEUROSPORA TITLE 2 CRASSA CIRCADIAN CLOCK COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRQ-INTERACTING RNA HELICASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROBABLE ATP DEPENDENT RNA HELICASE; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'-R(*AP*AP*AP*A)-3'); COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEUROSPORA CRASSA; SOURCE 3 ORGANISM_TAXID: 5141; SOURCE 4 GENE: B9B11.040, FRH, NCU03363.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS CIRCADIAN CLOCK, RNA BINDING PROTEIN-RNA COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.S.CONRAD,B.C.CRANE REVDAT 5 27-SEP-23 5E02 1 REMARK REVDAT 4 25-DEC-19 5E02 1 REMARK REVDAT 3 20-SEP-17 5E02 1 JRNL REMARK REVDAT 2 17-AUG-16 5E02 1 JRNL REVDAT 1 06-JUL-16 5E02 0 JRNL AUTH K.S.CONRAD,J.M.HURLEY,J.WIDOM,C.S.RINGELBERG,J.J.LOROS, JRNL AUTH 2 J.C.DUNLAP,B.R.CRANE JRNL TITL STRUCTURE OF THE FREQUENCY-INTERACTING RNA HELICASE: A JRNL TITL 2 PROTEIN INTERACTION HUB FOR THE CIRCADIAN CLOCK. JRNL REF EMBO J. V. 35 1707 2016 JRNL REFN ESSN 1460-2075 JRNL PMID 27340124 JRNL DOI 10.15252/EMBJ.201694327 REMARK 2 REMARK 2 RESOLUTION. 3.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 9667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.282 REMARK 3 R VALUE (WORKING SET) : 0.278 REMARK 3 FREE R VALUE : 0.321 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 81.2103 - 7.2683 0.88 1270 141 0.2223 0.2546 REMARK 3 2 7.2683 - 5.7695 0.94 1290 144 0.3088 0.4029 REMARK 3 3 5.7695 - 5.0404 0.92 1232 136 0.3065 0.3852 REMARK 3 4 5.0404 - 4.5796 0.94 1273 140 0.2688 0.3054 REMARK 3 5 4.5796 - 4.2513 0.96 1282 144 0.3031 0.3109 REMARK 3 6 4.2513 - 4.0007 0.88 1169 130 0.3349 0.3559 REMARK 3 7 4.0007 - 3.8003 0.90 1185 131 0.3696 0.4084 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.630 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 145.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7960 REMARK 3 ANGLE : 0.890 10775 REMARK 3 CHIRALITY : 0.034 1205 REMARK 3 PLANARITY : 0.004 1381 REMARK 3 DIHEDRAL : 13.905 3052 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E02 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000214103. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5-6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9816 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.800 REMARK 200 RESOLUTION RANGE LOW (A) : 106.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.14900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 1.41600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4XGT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, PEG600, PH 5.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.21600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.64900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.64900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.21600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ASP A 3 REMARK 465 LEU A 4 REMARK 465 PHE A 5 REMARK 465 GLU A 6 REMARK 465 VAL A 7 REMARK 465 PHE A 8 REMARK 465 GLU A 9 REMARK 465 GLU A 10 REMARK 465 GLN A 11 REMARK 465 PRO A 12 REMARK 465 ARG A 13 REMARK 465 ALA A 14 REMARK 465 GLN A 15 REMARK 465 LYS A 16 REMARK 465 LYS A 17 REMARK 465 ARG A 18 REMARK 465 LYS A 19 REMARK 465 ALA A 20 REMARK 465 SER A 21 REMARK 465 PRO A 22 REMARK 465 ASP A 23 REMARK 465 VAL A 24 REMARK 465 GLU A 25 REMARK 465 MET A 26 REMARK 465 ALA A 27 REMARK 465 ASP A 28 REMARK 465 GLY A 29 REMARK 465 ALA A 30 REMARK 465 ALA A 31 REMARK 465 ALA A 32 REMARK 465 ALA A 33 REMARK 465 ALA A 34 REMARK 465 PRO A 35 REMARK 465 VAL A 36 REMARK 465 ALA A 37 REMARK 465 ASN A 38 REMARK 465 ALA A 39 REMARK 465 ALA A 40 REMARK 465 ALA A 41 REMARK 465 ALA A 42 REMARK 465 VAL A 43 REMARK 465 THR A 44 REMARK 465 HIS A 45 REMARK 465 PRO A 46 REMARK 465 GLN A 47 REMARK 465 ALA A 48 REMARK 465 GLN A 49 REMARK 465 ALA A 50 REMARK 465 ALA A 51 REMARK 465 PRO A 52 REMARK 465 ALA A 53 REMARK 465 PRO A 54 REMARK 465 GLN A 55 REMARK 465 LYS A 56 REMARK 465 ASP A 57 REMARK 465 ASN A 58 REMARK 465 ILE A 59 REMARK 465 ASP A 60 REMARK 465 ASN A 61 REMARK 465 ASN A 62 REMARK 465 ASP A 63 REMARK 465 ASN A 64 REMARK 465 ASN A 65 REMARK 465 ASN A 66 REMARK 465 ASN A 67 REMARK 465 ASN A 68 REMARK 465 THR A 69 REMARK 465 THR A 70 REMARK 465 THR A 71 REMARK 465 SER A 72 REMARK 465 ALA A 73 REMARK 465 VAL A 74 REMARK 465 GLN A 75 REMARK 465 PRO A 76 REMARK 465 THR A 77 REMARK 465 ILE A 78 REMARK 465 PRO A 79 REMARK 465 ASN A 80 REMARK 465 GLY A 81 REMARK 465 ASP A 82 REMARK 465 ALA A 83 REMARK 465 ALA A 84 REMARK 465 ALA A 85 REMARK 465 ALA A 86 REMARK 465 ALA A 87 REMARK 465 ASP A 88 REMARK 465 ASP A 89 REMARK 465 VAL A 90 REMARK 465 GLN A 91 REMARK 465 SER A 92 REMARK 465 PRO A 93 REMARK 465 GLN A 94 REMARK 465 SER A 95 REMARK 465 PRO A 96 REMARK 465 HIS A 97 REMARK 465 GLY A 98 REMARK 465 LEU A 99 REMARK 465 GLY A 100 REMARK 465 ASP A 101 REMARK 465 ASN A 102 REMARK 465 LYS A 103 REMARK 465 ARG A 104 REMARK 465 ARG A 105 REMARK 465 LYS A 106 REMARK 465 LYS A 107 REMARK 465 THR A 108 REMARK 465 ASP A 109 REMARK 465 GLU A 110 REMARK 465 ALA A 111 REMARK 465 GLU A 112 REMARK 465 PRO A 113 REMARK 465 LYS A 395 REMARK 465 GLY A 396 REMARK 465 THR A 397 REMARK 465 ASP A 398 REMARK 465 SER A 399 REMARK 465 ASN A 400 REMARK 465 ASP A 401 REMARK 465 TRP A 402 REMARK 465 SER A 403 REMARK 465 ALA A 404 REMARK 465 LYS A 405 REMARK 465 GLN A 406 REMARK 465 LYS A 407 REMARK 465 GLY A 408 REMARK 465 LYS A 409 REMARK 465 GLY A 410 REMARK 465 LYS A 411 REMARK 465 ASN A 412 REMARK 465 LYS A 413 REMARK 465 LYS A 414 REMARK 465 THR A 415 REMARK 465 ASN A 416 REMARK 465 LYS A 417 REMARK 465 GLY A 418 REMARK 465 GLY A 419 REMARK 465 GLU A 420 REMARK 465 ALA A 421 REMARK 465 ALA A 422 REMARK 465 ASP A 423 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 119 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 424 CG CD OE1 OE2 REMARK 470 LYS A 425 CG CD CE NZ REMARK 470 ARG A 684 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 209 O2B ADP A 1201 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 876 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 A C 1 N9 - C4 - C5 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 115 -70.89 -126.51 REMARK 500 GLU A 123 -73.45 -97.07 REMARK 500 PHE A 133 -77.83 -127.80 REMARK 500 SER A 140 27.51 46.41 REMARK 500 VAL A 142 149.39 -177.21 REMARK 500 HIS A 145 -70.05 -128.83 REMARK 500 ALA A 171 -70.25 -57.99 REMARK 500 SER A 178 -2.84 67.37 REMARK 500 GLU A 195 66.45 60.32 REMARK 500 ASN A 223 69.93 61.87 REMARK 500 ILE A 302 -66.56 -99.44 REMARK 500 LYS A 557 -168.54 -124.76 REMARK 500 TRP A 558 -177.82 -68.84 REMARK 500 ARG A 580 -175.95 -65.81 REMARK 500 ARG A 581 -71.67 -71.14 REMARK 500 LEU A 597 -78.89 -128.86 REMARK 500 ASP A 673 70.41 54.60 REMARK 500 SER A 675 -62.13 -92.39 REMARK 500 TYR A 680 -62.95 -97.02 REMARK 500 ILE A 730 -63.78 -97.05 REMARK 500 THR A 737 77.58 54.31 REMARK 500 LYS A 739 -79.70 -61.73 REMARK 500 ASN A 740 -66.15 -138.17 REMARK 500 PRO A 765 71.35 -59.59 REMARK 500 PRO A 779 53.18 -67.80 REMARK 500 SER A 784 -61.58 -90.90 REMARK 500 PRO A 793 77.72 -69.68 REMARK 500 GLU A 814 -64.90 -124.79 REMARK 500 MET A 843 -71.69 -79.07 REMARK 500 PRO A 871 63.10 -64.98 REMARK 500 ASN A 874 -1.01 78.86 REMARK 500 SER A 875 128.00 -174.84 REMARK 500 PRO A 876 59.90 -100.30 REMARK 500 SER A 944 -60.96 -126.15 REMARK 500 ARG A 960 70.92 62.24 REMARK 500 PHE A 961 -62.58 -109.67 REMARK 500 ASN A1102 -74.88 -136.07 REMARK 500 TYR A1105 -69.93 -131.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 557 TRP A 558 -145.46 REMARK 500 ASP A 559 GLY A 560 -148.30 REMARK 500 ASN A 764 PRO A 765 -143.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 1201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DZR RELATED DB: PDB DBREF 5E02 A 1 1106 UNP Q873J5 Q873J5_NEUCS 1 1106 DBREF 5E02 C 1 4 PDB 5E02 5E02 1 4 SEQRES 1 A 1106 MET ASP ASP LEU PHE GLU VAL PHE GLU GLU GLN PRO ARG SEQRES 2 A 1106 ALA GLN LYS LYS ARG LYS ALA SER PRO ASP VAL GLU MET SEQRES 3 A 1106 ALA ASP GLY ALA ALA ALA ALA ALA PRO VAL ALA ASN ALA SEQRES 4 A 1106 ALA ALA ALA VAL THR HIS PRO GLN ALA GLN ALA ALA PRO SEQRES 5 A 1106 ALA PRO GLN LYS ASP ASN ILE ASP ASN ASN ASP ASN ASN SEQRES 6 A 1106 ASN ASN ASN THR THR THR SER ALA VAL GLN PRO THR ILE SEQRES 7 A 1106 PRO ASN GLY ASP ALA ALA ALA ALA ALA ASP ASP VAL GLN SEQRES 8 A 1106 SER PRO GLN SER PRO HIS GLY LEU GLY ASP ASN LYS ARG SEQRES 9 A 1106 ARG LYS LYS THR ASP GLU ALA GLU PRO ILE MET THR ASP SEQRES 10 A 1106 ALA PHE GLN THR ALA GLU SER ARG GLU VAL THR GLY ALA SEQRES 11 A 1106 GLN GLY PHE ALA PRO THR GLU GLY GLU SER ILE VAL LEU SEQRES 12 A 1106 SER HIS ASN ILE GLN HIS GLN VAL ALA LEU PRO PRO ASP SEQRES 13 A 1106 LEU ASP TYR GLU TYR ILE PRO LEU SER GLU HIS LYS PRO SEQRES 14 A 1106 PRO ALA GLU PRO ALA ARG THR TYR SER PHE LYS LEU ASP SEQRES 15 A 1106 PRO PHE GLN ALA LEU SER VAL ALA SER ILE GLU ARG GLU SEQRES 16 A 1106 GLU SER VAL LEU VAL SER ALA HIS THR SER ALA GLY LYS SEQRES 17 A 1106 THR VAL VAL ALA GLU TYR ALA ILE ALA GLN CYS LEU LYS SEQRES 18 A 1106 LYS ASN GLN ARG VAL ILE TYR THR SER PRO ILE LYS ALA SEQRES 19 A 1106 LEU SER ASN GLN LYS TYR ARG ASP PHE GLN ALA GLU PHE SEQRES 20 A 1106 GLY ASP VAL GLY LEU MET THR GLY ASP VAL THR ILE ASN SEQRES 21 A 1106 PRO THR ALA SER CYS LEU VAL MET THR THR GLU ILE LEU SEQRES 22 A 1106 ARG SER MET LEU TYR ARG GLY SER GLU ILE MET ARG GLU SEQRES 23 A 1106 VAL ALA TRP VAL VAL PHE ASP GLU ILE HIS TYR MET ARG SEQRES 24 A 1106 ASP LYS ILE ARG GLY VAL VAL TRP GLU GLU THR ILE ILE SEQRES 25 A 1106 LEU LEU PRO ASP LYS VAL ARG TYR VAL PHE LEU SER ALA SEQRES 26 A 1106 THR ILE PRO ASN ALA PHE GLN PHE ALA GLU TRP ILE ALA SEQRES 27 A 1106 LYS ILE HIS ARG GLN ALA CYS HIS VAL VAL TYR THR ASP SEQRES 28 A 1106 PHE ARG PRO THR PRO LEU GLN ASN TYR PHE PHE PRO ALA SEQRES 29 A 1106 GLY GLY LYS GLY ILE LEU LEU ILE VAL ASP GLU LYS GLY SEQRES 30 A 1106 ASN PHE LYS GLU ASN ASN PHE ASN GLN ALA MET ALA MET SEQRES 31 A 1106 ILE GLU GLU LYS LYS GLY THR ASP SER ASN ASP TRP SER SEQRES 32 A 1106 ALA LYS GLN LYS GLY LYS GLY LYS ASN LYS LYS THR ASN SEQRES 33 A 1106 LYS GLY GLY GLU ALA ALA ASP GLU LYS ALA ASP ILE ALA SEQRES 34 A 1106 LYS ILE ILE LYS MET ILE LEU LYS LYS ASN PHE GLN PRO SEQRES 35 A 1106 VAL ILE VAL PHE ASN PHE SER LYS ARG GLU CYS GLU GLN SEQRES 36 A 1106 MET ALA LEU ALA SER SER SER MET LYS PHE ASN ALA PRO SEQRES 37 A 1106 ASP GLU GLU ASN MET VAL ASN LYS VAL PHE GLU ASN ALA SEQRES 38 A 1106 LEU ALA SER LEU SER GLU ASP ASP LYS ASN LEU PRO GLN SEQRES 39 A 1106 ILE SER ASN ILE LEU PRO LEU LEU ARG LYS GLY ILE GLY SEQRES 40 A 1106 VAL HIS HIS SER GLY LEU LEU PRO ILE LEU LYS GLU THR SEQRES 41 A 1106 ILE GLU ILE LEU PHE GLN GLU GLY LEU ILE LYS VAL LEU SEQRES 42 A 1106 PHE ALA THR GLU THR PHE SER ILE GLY LEU ASN MET PRO SEQRES 43 A 1106 ALA ARG THR VAL VAL PHE THR GLN VAL THR LYS TRP ASP SEQRES 44 A 1106 GLY GLN GLN ARG ARG PRO LEU THR SER SER GLU TYR ILE SEQRES 45 A 1106 GLN MET ALA GLY ARG ALA GLY ARG ARG GLY LEU ASP ASP SEQRES 46 A 1106 ARG GLY ILE VAL ILE MET MET VAL ASP ASP LYS LEU GLU SEQRES 47 A 1106 PRO GLU THR ALA ARG ALA ILE VAL VAL GLY ASN GLN ASP SEQRES 48 A 1106 LYS LEU ASN SER ALA PHE HIS LEU GLY TYR ASN MET VAL SEQRES 49 A 1106 LEU ASN LEU LEU ARG ILE GLU ALA ILE SER PRO GLU TYR SEQRES 50 A 1106 MET LEU GLU ARG CYS PHE PHE GLN PHE GLN ASN ALA ALA SEQRES 51 A 1106 SER VAL PRO GLN LEU GLU ARG GLU LEU ILE SER LEU GLN SEQRES 52 A 1106 GLN GLU ARG ASP ALA ILE ILE ILE PRO ASP GLU SER ILE SEQRES 53 A 1106 VAL LYS ASP TYR TYR GLY VAL ARG GLN GLN LEU GLU GLU SEQRES 54 A 1106 TYR ASN LYS ASP MET VAL PHE VAL ILE GLN HIS PRO GLN SEQRES 55 A 1106 ASN CYS LEU GLY PHE PHE GLN GLU GLY ARG LEU ILE HIS SEQRES 56 A 1106 ILE LYS SER PRO SER GLY VAL ASP TYR GLY TRP GLY VAL SEQRES 57 A 1106 LEU ILE LYS HIS ILE GLN ARG GLN THR PRO LYS ASN GLY SEQRES 58 A 1106 GLN PRO PRO TYR PRO GLU GLN GLU SER TYR VAL LEU ASP SEQRES 59 A 1106 VAL LEU LEU LYS VAL SER GLY ASP PHE ASN PRO LYS THR SEQRES 60 A 1106 ARG GLY GLU GLY PRO MET PRO GLU GLY ILE MET PRO ALA SEQRES 61 A 1106 GLY LYS ASP SER LYS ASN ALA ARG TRP GLU VAL VAL PRO SEQRES 62 A 1106 CYS LEU LEU ASN CYS LEU ARG ALA LEU GLY GLN LEU ARG SEQRES 63 A 1106 VAL PHE LEU PRO LYS ARG LEU GLU SER ALA ASP GLU LYS SEQRES 64 A 1106 ASP GLY VAL GLY LYS ALA VAL ASP GLU ILE SER ARG ARG SEQRES 65 A 1106 PHE PRO ASP GLY ILE PRO ILE LEU ASP PRO MET GLU ASN SEQRES 66 A 1106 MET GLY ILE ASN ASP ASP SER PHE LYS LYS LEU LEU ARG SEQRES 67 A 1106 LYS ILE GLU VAL LEU GLU SER ARG LEU VAL ALA ASN PRO SEQRES 68 A 1106 LEU HIS ASN SER PRO LEU LEU VAL GLU LEU TRP ASN GLN SEQRES 69 A 1106 TYR SER LEU LYS MET GLN LEU GLY GLU GLN ILE LYS GLU SEQRES 70 A 1106 LYS LYS LYS ALA ILE ALA ARG ALA HIS SER VAL ALA GLN SEQRES 71 A 1106 LEU ASP GLU LEU LYS SER ARG LYS ARG VAL LEU ARG ARG SEQRES 72 A 1106 LEU GLY PHE ILE ASN ASP ALA GLU VAL VAL GLN MET LYS SEQRES 73 A 1106 ALA ARG VAL ALA CYS GLU ILE SER SER THR GLU GLY HIS SEQRES 74 A 1106 GLU LEU LEU LEU ALA GLU LEU LEU PHE ASN ARG PHE PHE SEQRES 75 A 1106 ASN GLU LEU SER PRO GLU ILE CYS ALA CYS ILE LEU SER SEQRES 76 A 1106 CYS PHE ILE PHE ASP GLU LYS ILE GLU THR GLN ALA LEU SEQRES 77 A 1106 LYS GLU GLU LEU ALA LYS PRO PHE ARG GLU ILE GLN ALA SEQRES 78 A 1106 GLN ALA ARG ILE ILE ALA LYS VAL SER ALA GLU SER LYS SEQRES 79 A 1106 LEU ASP VAL ASN GLU ASP GLU TYR VAL GLN SER LEU LYS SEQRES 80 A 1106 TRP GLN LEU MET GLU THR VAL LEU ALA TRP ALA GLN GLY SEQRES 81 A 1106 ARG PRO PHE SER GLU ILE CYS LYS MET THR ASN VAL TYR SEQRES 82 A 1106 GLU GLY SER LEU ILE ARG LEU PHE ARG ARG LEU GLU GLU SEQRES 83 A 1106 LEU LEU ARG GLN MET ALA GLU ALA ALA ARG VAL MET GLY SEQRES 84 A 1106 SER GLU GLU LEU LYS ASP LYS PHE GLU LEU SER LEU SER SEQRES 85 A 1106 LYS ILE ARG ARG ASP ILE VAL SER PHE ASN SER LEU TYR SEQRES 86 A 1106 LEU SEQRES 1 C 4 A A A A HET ADP A1201 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 ADP C10 H15 N5 O10 P2 HELIX 1 AA1 ASP A 182 ARG A 194 1 13 HELIX 2 AA2 HIS A 203 GLY A 207 5 5 HELIX 3 AA3 LYS A 208 LYS A 222 1 15 HELIX 4 AA4 ILE A 232 PHE A 247 1 16 HELIX 5 AA5 THR A 270 ARG A 279 1 10 HELIX 6 AA6 SER A 281 ARG A 285 5 5 HELIX 7 AA7 ILE A 295 ASP A 300 5 6 HELIX 8 AA8 ARG A 303 LEU A 314 1 12 HELIX 9 AA9 ASN A 329 ARG A 342 1 14 HELIX 10 AB1 LYS A 380 ALA A 389 1 10 HELIX 11 AB2 MET A 390 LYS A 394 5 5 HELIX 12 AB3 ALA A 426 LYS A 438 1 13 HELIX 13 AB4 LYS A 450 SER A 460 1 11 HELIX 14 AB5 SER A 461 MET A 463 5 3 HELIX 15 AB6 ALA A 467 ASN A 472 1 6 HELIX 16 AB7 SER A 486 ASN A 491 1 6 HELIX 17 AB8 LEU A 492 LYS A 504 1 13 HELIX 18 AB9 LEU A 514 GLU A 527 1 14 HELIX 19 AC1 GLU A 537 GLY A 542 1 6 HELIX 20 AC2 THR A 567 GLY A 576 1 10 HELIX 21 AC3 PRO A 599 VAL A 607 1 9 HELIX 22 AC4 GLY A 620 ILE A 630 1 11 HELIX 23 AC5 SER A 634 CYS A 642 1 9 HELIX 24 AC6 CYS A 642 ILE A 669 1 28 HELIX 25 AC7 VAL A 677 ASN A 691 1 15 HELIX 26 AC8 ASN A 691 HIS A 700 1 10 HELIX 27 AC9 ASN A 703 PHE A 708 5 6 HELIX 28 AD1 PRO A 746 SER A 750 1 5 HELIX 29 AD2 SER A 815 PHE A 833 1 19 HELIX 30 AD3 ASP A 850 VAL A 868 1 19 HELIX 31 AD4 LEU A 877 HIS A 906 1 30 HELIX 32 AD5 VAL A 908 LEU A 924 1 17 HELIX 33 AD6 GLN A 934 CYS A 941 1 8 HELIX 34 AD7 HIS A 949 ASN A 959 1 11 HELIX 35 AD8 PHE A 961 LEU A 965 5 5 HELIX 36 AD9 SER A 966 LEU A 974 1 9 HELIX 37 AE1 LEU A 974 PHE A 979 1 6 HELIX 38 AE2 LYS A 989 GLU A 1012 1 24 HELIX 39 AE3 ASN A 1018 GLN A 1024 1 7 HELIX 40 AE4 LEU A 1030 GLN A 1039 1 10 HELIX 41 AE5 PRO A 1042 CYS A 1047 1 6 HELIX 42 AE6 TYR A 1053 GLY A 1079 1 27 HELIX 43 AE7 GLU A 1081 SER A 1092 1 12 SHEET 1 AA1 8 ILE A 147 ALA A 152 0 SHEET 2 AA1 8 CYS A 345 THR A 350 -1 O CYS A 345 N ALA A 152 SHEET 3 AA1 8 VAL A 198 SER A 201 1 N LEU A 199 O VAL A 348 SHEET 4 AA1 8 ARG A 319 SER A 324 1 O PHE A 322 N VAL A 200 SHEET 5 AA1 8 VAL A 287 ASP A 293 1 N PHE A 292 O LEU A 323 SHEET 6 AA1 8 ARG A 225 SER A 230 1 N ILE A 227 O VAL A 291 SHEET 7 AA1 8 CYS A 265 THR A 269 1 O LEU A 266 N TYR A 228 SHEET 8 AA1 8 VAL A 250 MET A 253 1 N MET A 253 O VAL A 267 SHEET 1 AA2 7 LEU A 370 VAL A 373 0 SHEET 2 AA2 7 LEU A 357 PRO A 363 -1 N PHE A 361 O LEU A 370 SHEET 3 AA2 7 GLY A 587 VAL A 593 1 O MET A 591 N PHE A 362 SHEET 4 AA2 7 THR A 549 PHE A 552 1 N PHE A 552 O ILE A 590 SHEET 5 AA2 7 VAL A 443 PHE A 446 1 N ILE A 444 O THR A 549 SHEET 6 AA2 7 VAL A 532 ALA A 535 1 O LEU A 533 N VAL A 445 SHEET 7 AA2 7 ILE A 506 HIS A 509 1 N GLY A 507 O VAL A 532 SHEET 1 AA3 2 THR A 556 LYS A 557 0 SHEET 2 AA3 2 ARG A 564 PRO A 565 -1 O ARG A 564 N LYS A 557 SHEET 1 AA4 5 GLU A 790 LEU A 795 0 SHEET 2 AA4 5 TYR A 751 LEU A 757 -1 N VAL A 755 O VAL A 792 SHEET 3 AA4 5 ASP A 723 GLN A 734 -1 N LYS A 731 O ASP A 754 SHEET 4 AA4 5 ARG A 712 LYS A 717 -1 N ARG A 712 O LEU A 729 SHEET 5 AA4 5 LEU A 799 ARG A 806 -1 O GLY A 803 N LEU A 713 CISPEP 1 VAL A 142 LEU A 143 0 -23.17 CISPEP 2 GLN A 441 PRO A 442 0 -4.24 SITE 1 AC1 8 ASP A 182 THR A 204 GLY A 207 LYS A 208 SITE 2 AC1 8 THR A 209 LEU A 543 ASN A 544 ARG A 581 CRYST1 76.432 106.600 125.298 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013084 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009381 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007981 0.00000