HEADER TRANSFERASE 29-SEP-15 5E1I TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS L,D-TRANSPEPTIDASE 2 TITLE 2 WITH CARBAPENEM DRUG T210 COMPND MOL_ID: 1; COMPND 2 MOLECULE: L,D-TRANSPEPTIDASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 42-408; COMPND 5 SYNONYM: LDT 2,LDT(MT2); COMPND 6 EC: 2.3.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: LDTB, LPPS, RV2518C, RVBD_2518C, P425_02624; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PEPTIDOGLYCAN SYNTHESIS ENZYME, CELL WALL ENZYME, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.KUMAR,S.L.GINELL,G.LAMICHHANE REVDAT 7 09-OCT-24 5E1I 1 REMARK REVDAT 6 27-SEP-23 5E1I 1 REMARK REVDAT 5 20-SEP-17 5E1I 1 REMARK REVDAT 4 28-DEC-16 5E1I 1 JRNL REVDAT 3 23-NOV-16 5E1I 1 JRNL REVDAT 2 09-NOV-16 5E1I 1 JRNL REVDAT 1 12-OCT-16 5E1I 0 JRNL AUTH P.KUMAR,A.KAUSHIK,E.P.LLOYD,S.G.LI,R.MATTOO,N.C.AMMERMAN, JRNL AUTH 2 D.T.BELL,A.L.PERRYMAN,T.A.ZANDI,S.EKINS,S.L.GINELL, JRNL AUTH 3 C.A.TOWNSEND,J.S.FREUNDLICH,G.LAMICHHANE JRNL TITL NON-CLASSICAL TRANSPEPTIDASES YIELD INSIGHT INTO NEW JRNL TITL 2 ANTIBACTERIALS. JRNL REF NAT. CHEM. BIOL. V. 13 54 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 27820797 JRNL DOI 10.1038/NCHEMBIO.2237 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 56414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2483 - 5.4307 0.99 2749 156 0.1741 0.1937 REMARK 3 2 5.4307 - 4.3126 0.99 2674 192 0.1531 0.1639 REMARK 3 3 4.3126 - 3.7680 1.00 2747 133 0.1622 0.2086 REMARK 3 4 3.7680 - 3.4238 0.99 2696 138 0.1822 0.2281 REMARK 3 5 3.4238 - 3.1785 0.99 2729 140 0.1983 0.1888 REMARK 3 6 3.1785 - 2.9912 0.99 2738 129 0.2088 0.2582 REMARK 3 7 2.9912 - 2.8415 0.99 2660 159 0.2188 0.2432 REMARK 3 8 2.8415 - 2.7178 0.99 2713 117 0.2081 0.2520 REMARK 3 9 2.7178 - 2.6132 0.99 2655 146 0.2147 0.2599 REMARK 3 10 2.6132 - 2.5231 0.99 2697 167 0.2149 0.2857 REMARK 3 11 2.5231 - 2.4442 0.98 2619 147 0.2131 0.2587 REMARK 3 12 2.4442 - 2.3743 0.98 2691 124 0.2153 0.2635 REMARK 3 13 2.3743 - 2.3118 0.98 2701 141 0.2123 0.2690 REMARK 3 14 2.3118 - 2.2554 0.98 2665 128 0.2024 0.2454 REMARK 3 15 2.2554 - 2.2042 0.98 2643 153 0.2058 0.2561 REMARK 3 16 2.2042 - 2.1573 0.99 2685 133 0.2004 0.2438 REMARK 3 17 2.1573 - 2.1141 0.98 2628 127 0.1968 0.2562 REMARK 3 18 2.1141 - 2.0742 0.98 2698 119 0.1874 0.2354 REMARK 3 19 2.0742 - 2.0372 0.99 2633 131 0.1913 0.2512 REMARK 3 20 2.0372 - 2.0027 0.94 2582 131 0.2067 0.2796 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5443 REMARK 3 ANGLE : 1.180 7453 REMARK 3 CHIRALITY : 0.050 839 REMARK 3 PLANARITY : 0.005 976 REMARK 3 DIHEDRAL : 12.720 1890 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E1I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000214183. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : PH 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56440 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.42900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VYN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG5000MME, AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.97850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 39 REMARK 465 HIS A 40 REMARK 465 MET A 41 REMARK 465 ALA A 42 REMARK 465 PRO A 43 REMARK 465 ILE A 44 REMARK 465 LYS A 45 REMARK 465 VAL A 46 REMARK 465 ILE A 47 REMARK 465 ALA A 48 REMARK 465 ASP A 49 REMARK 465 LYS A 50 REMARK 465 GLY A 51 REMARK 465 THR A 52 REMARK 465 PRO A 53 REMARK 465 PHE A 54 REMARK 465 ALA A 55 REMARK 465 ASP A 56 REMARK 465 ALA A 408 REMARK 465 GLY B 39 REMARK 465 HIS B 40 REMARK 465 MET B 41 REMARK 465 ALA B 42 REMARK 465 PRO B 43 REMARK 465 ILE B 44 REMARK 465 LYS B 45 REMARK 465 VAL B 46 REMARK 465 ILE B 47 REMARK 465 ALA B 48 REMARK 465 ASP B 49 REMARK 465 LYS B 50 REMARK 465 GLY B 51 REMARK 465 THR B 52 REMARK 465 PRO B 53 REMARK 465 PHE B 54 REMARK 465 ALA B 55 REMARK 465 ASP B 56 REMARK 465 LEU B 57 REMARK 465 ALA B 408 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 407 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 68 O HOH B 501 2.08 REMARK 500 O HOH A 710 O HOH A 739 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL B 75 CB VAL B 75 CG1 -0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 204 -169.06 -168.58 REMARK 500 PRO A 315 -80.29 -41.10 REMARK 500 ASN A 316 51.81 -96.99 REMARK 500 HIS A 347 -57.63 -132.02 REMARK 500 ASN A 405 42.15 -148.00 REMARK 500 ALA B 84 -64.26 -103.65 REMARK 500 ASP B 85 57.42 -106.39 REMARK 500 ASN B 204 -169.96 -163.84 REMARK 500 MET B 280 -163.13 -101.29 REMARK 500 HIS B 347 -56.63 -133.19 REMARK 500 ASN B 405 36.78 -151.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 69 ALA B 70 -141.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 751 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B 660 DISTANCE = 7.07 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 251 O REMARK 620 2 ASP A 373 OD1 99.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6B8 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5E1G RELATED DB: PDB REMARK 900 RELATED ID: 5DZP RELATED DB: PDB REMARK 900 RELATED ID: 5DZJ RELATED DB: PDB DBREF 5E1I A 42 408 UNP I6Y9J2 LDT2_MYCTU 42 408 DBREF 5E1I B 42 408 UNP I6Y9J2 LDT2_MYCTU 42 408 SEQADV 5E1I GLY A 39 UNP I6Y9J2 EXPRESSION TAG SEQADV 5E1I HIS A 40 UNP I6Y9J2 EXPRESSION TAG SEQADV 5E1I MET A 41 UNP I6Y9J2 EXPRESSION TAG SEQADV 5E1I GLY B 39 UNP I6Y9J2 EXPRESSION TAG SEQADV 5E1I HIS B 40 UNP I6Y9J2 EXPRESSION TAG SEQADV 5E1I MET B 41 UNP I6Y9J2 EXPRESSION TAG SEQRES 1 A 370 GLY HIS MET ALA PRO ILE LYS VAL ILE ALA ASP LYS GLY SEQRES 2 A 370 THR PRO PHE ALA ASP LEU LEU VAL PRO LYS LEU THR ALA SEQRES 3 A 370 SER VAL THR ASP GLY ALA VAL GLY VAL THR VAL ASP ALA SEQRES 4 A 370 PRO VAL SER VAL THR ALA ALA ASP GLY VAL LEU ALA ALA SEQRES 5 A 370 VAL THR MET VAL ASN ASP ASN GLY ARG PRO VAL ALA GLY SEQRES 6 A 370 ARG LEU SER PRO ASP GLY LEU ARG TRP SER THR THR GLU SEQRES 7 A 370 GLN LEU GLY TYR ASN ARG ARG TYR THR LEU ASN ALA THR SEQRES 8 A 370 ALA LEU GLY LEU GLY GLY ALA ALA THR ARG GLN LEU THR SEQRES 9 A 370 PHE GLN THR SER SER PRO ALA HIS LEU THR MET PRO TYR SEQRES 10 A 370 VAL MET PRO GLY ASP GLY GLU VAL VAL GLY VAL GLY GLU SEQRES 11 A 370 PRO VAL ALA ILE ARG PHE ASP GLU ASN ILE ALA ASP ARG SEQRES 12 A 370 GLY ALA ALA GLU LYS ALA ILE LYS ILE THR THR ASN PRO SEQRES 13 A 370 PRO VAL GLU GLY ALA PHE TYR TRP LEU ASN ASN ARG GLU SEQRES 14 A 370 VAL ARG TRP ARG PRO GLU HIS PHE TRP LYS PRO GLY THR SEQRES 15 A 370 ALA VAL ASP VAL ALA VAL ASN THR TYR GLY VAL ASP LEU SEQRES 16 A 370 GLY GLU GLY MET PHE GLY GLU ASP ASN VAL GLN THR HIS SEQRES 17 A 370 PHE THR ILE GLY ASP GLU VAL ILE ALA THR ALA ASP ASP SEQRES 18 A 370 ASN THR LYS ILE LEU THR VAL ARG VAL ASN GLY GLU VAL SEQRES 19 A 370 VAL LYS SER MET PRO THR SER MET GLY LYS ASP SER THR SEQRES 20 A 370 PRO THR ALA ASN GLY ILE TYR ILE VAL GLY SER ARG TYR SEQRES 21 A 370 LYS HIS ILE ILE MET ASP SER SER THR TYR GLY VAL PRO SEQRES 22 A 370 VAL ASN SER PRO ASN GLY TYR ARG THR ASP VAL ASP TRP SEQRES 23 A 370 ALA THR GLN ILE SER TYR SER GLY VAL PHE VAL HIS SER SEQRES 24 A 370 ALA PRO TRP SER VAL GLY ALA GLN GLY HIS THR ASN THR SEQRES 25 A 370 SER HIS GLY CYS LEU ASN VAL SER PRO SER ASN ALA GLN SEQRES 26 A 370 TRP PHE TYR ASP HIS VAL LYS ARG GLY ASP ILE VAL GLU SEQRES 27 A 370 VAL VAL ASN THR VAL GLY GLY THR LEU PRO GLY ILE ASP SEQRES 28 A 370 GLY LEU GLY ASP TRP ASN ILE PRO TRP ASP GLN TRP ARG SEQRES 29 A 370 ALA GLY ASN ALA LYS ALA SEQRES 1 B 370 GLY HIS MET ALA PRO ILE LYS VAL ILE ALA ASP LYS GLY SEQRES 2 B 370 THR PRO PHE ALA ASP LEU LEU VAL PRO LYS LEU THR ALA SEQRES 3 B 370 SER VAL THR ASP GLY ALA VAL GLY VAL THR VAL ASP ALA SEQRES 4 B 370 PRO VAL SER VAL THR ALA ALA ASP GLY VAL LEU ALA ALA SEQRES 5 B 370 VAL THR MET VAL ASN ASP ASN GLY ARG PRO VAL ALA GLY SEQRES 6 B 370 ARG LEU SER PRO ASP GLY LEU ARG TRP SER THR THR GLU SEQRES 7 B 370 GLN LEU GLY TYR ASN ARG ARG TYR THR LEU ASN ALA THR SEQRES 8 B 370 ALA LEU GLY LEU GLY GLY ALA ALA THR ARG GLN LEU THR SEQRES 9 B 370 PHE GLN THR SER SER PRO ALA HIS LEU THR MET PRO TYR SEQRES 10 B 370 VAL MET PRO GLY ASP GLY GLU VAL VAL GLY VAL GLY GLU SEQRES 11 B 370 PRO VAL ALA ILE ARG PHE ASP GLU ASN ILE ALA ASP ARG SEQRES 12 B 370 GLY ALA ALA GLU LYS ALA ILE LYS ILE THR THR ASN PRO SEQRES 13 B 370 PRO VAL GLU GLY ALA PHE TYR TRP LEU ASN ASN ARG GLU SEQRES 14 B 370 VAL ARG TRP ARG PRO GLU HIS PHE TRP LYS PRO GLY THR SEQRES 15 B 370 ALA VAL ASP VAL ALA VAL ASN THR TYR GLY VAL ASP LEU SEQRES 16 B 370 GLY GLU GLY MET PHE GLY GLU ASP ASN VAL GLN THR HIS SEQRES 17 B 370 PHE THR ILE GLY ASP GLU VAL ILE ALA THR ALA ASP ASP SEQRES 18 B 370 ASN THR LYS ILE LEU THR VAL ARG VAL ASN GLY GLU VAL SEQRES 19 B 370 VAL LYS SER MET PRO THR SER MET GLY LYS ASP SER THR SEQRES 20 B 370 PRO THR ALA ASN GLY ILE TYR ILE VAL GLY SER ARG TYR SEQRES 21 B 370 LYS HIS ILE ILE MET ASP SER SER THR TYR GLY VAL PRO SEQRES 22 B 370 VAL ASN SER PRO ASN GLY TYR ARG THR ASP VAL ASP TRP SEQRES 23 B 370 ALA THR GLN ILE SER TYR SER GLY VAL PHE VAL HIS SER SEQRES 24 B 370 ALA PRO TRP SER VAL GLY ALA GLN GLY HIS THR ASN THR SEQRES 25 B 370 SER HIS GLY CYS LEU ASN VAL SER PRO SER ASN ALA GLN SEQRES 26 B 370 TRP PHE TYR ASP HIS VAL LYS ARG GLY ASP ILE VAL GLU SEQRES 27 B 370 VAL VAL ASN THR VAL GLY GLY THR LEU PRO GLY ILE ASP SEQRES 28 B 370 GLY LEU GLY ASP TRP ASN ILE PRO TRP ASP GLN TRP ARG SEQRES 29 B 370 ALA GLY ASN ALA LYS ALA HET NA A 501 1 HET 6B8 A 502 17 HET GOL A 503 6 HETNAM NA SODIUM ION HETNAM 6B8 (2S,3R,4R)-2-[(2S,3R)-3-HYDROXY-1-OXOBUTAN-2-YL]-3- HETNAM 2 6B8 METHYL-4-(METHYLSULFANYL)-3,4-DIHYDRO-2H-PYRROLE-5- HETNAM 3 6B8 CARBOXYLIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NA NA 1+ FORMUL 4 6B8 C11 H17 N O4 S FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *311(H2 O) HELIX 1 AA1 ASP A 180 ALA A 187 1 8 HELIX 2 AA2 SER A 306 GLY A 309 5 4 HELIX 3 AA3 PRO A 339 VAL A 342 5 4 HELIX 4 AA4 SER A 358 VAL A 369 1 12 HELIX 5 AA5 GLY A 392 ILE A 396 5 5 HELIX 6 AA6 PRO A 397 GLY A 404 1 8 HELIX 7 AA7 ASP B 180 ALA B 187 1 8 HELIX 8 AA8 SER B 306 GLY B 309 5 4 HELIX 9 AA9 PRO B 339 VAL B 342 5 4 HELIX 10 AB1 SER B 358 VAL B 369 1 12 HELIX 11 AB2 GLY B 392 ILE B 396 5 5 HELIX 12 AB3 PRO B 397 GLY B 404 1 8 SHEET 1 AA1 4 LYS A 61 ALA A 64 0 SHEET 2 AA1 4 SER A 80 ALA A 84 -1 O THR A 82 N THR A 63 SHEET 3 AA1 4 ARG A 111 THR A 114 -1 O TRP A 112 N VAL A 81 SHEET 4 AA1 4 GLY A 103 LEU A 105 -1 N ARG A 104 O SER A 113 SHEET 1 AA2 3 VAL A 87 VAL A 94 0 SHEET 2 AA2 3 ARG A 123 GLY A 132 -1 O ASN A 127 N THR A 92 SHEET 3 AA2 3 GLY A 135 GLN A 144 -1 O LEU A 141 N LEU A 126 SHEET 1 AA3 2 HIS A 150 THR A 152 0 SHEET 2 AA3 2 MET A 237 GLY A 239 1 O PHE A 238 N HIS A 150 SHEET 1 AA4 4 PRO A 154 MET A 157 0 SHEET 2 AA4 4 VAL A 170 PHE A 174 -1 O ARG A 173 N TYR A 155 SHEET 3 AA4 4 GLU A 207 PRO A 212 -1 O VAL A 208 N ILE A 172 SHEET 4 AA4 4 GLY A 198 TRP A 202 -1 N TYR A 201 O ARG A 209 SHEET 1 AA5 4 GLU A 162 VAL A 164 0 SHEET 2 AA5 4 VAL A 243 ILE A 249 1 O THR A 248 N VAL A 164 SHEET 3 AA5 4 ALA A 221 VAL A 226 -1 N VAL A 226 O VAL A 243 SHEET 4 AA5 4 ILE A 188 ASN A 193 -1 N ASN A 193 O ALA A 221 SHEET 1 AA6 5 GLU A 271 PRO A 277 0 SHEET 2 AA6 5 ILE A 263 VAL A 268 -1 N LEU A 264 O MET A 276 SHEET 3 AA6 5 VAL A 253 ASP A 258 -1 N THR A 256 O THR A 265 SHEET 4 AA6 5 ILE A 374 VAL A 378 1 O GLU A 376 N ALA A 257 SHEET 5 AA6 5 GLY A 290 ILE A 293 -1 N TYR A 292 O VAL A 375 SHEET 1 AA7 4 ARG A 297 ASP A 304 0 SHEET 2 AA7 4 ARG A 319 GLN A 327 -1 O THR A 320 N MET A 303 SHEET 3 AA7 4 PHE A 334 SER A 337 -1 O VAL A 335 N THR A 326 SHEET 4 AA7 4 LEU A 355 VAL A 357 1 O LEU A 355 N PHE A 334 SHEET 1 AA8 4 LEU B 62 ALA B 64 0 SHEET 2 AA8 4 SER B 80 ALA B 83 -1 O THR B 82 N THR B 63 SHEET 3 AA8 4 ARG B 111 THR B 114 -1 O TRP B 112 N VAL B 81 SHEET 4 AA8 4 GLY B 103 LEU B 105 -1 N ARG B 104 O SER B 113 SHEET 1 AA9 3 VAL B 87 VAL B 94 0 SHEET 2 AA9 3 ARG B 123 GLY B 132 -1 O ASN B 127 N THR B 92 SHEET 3 AA9 3 GLY B 135 GLN B 144 -1 O ALA B 137 N ALA B 130 SHEET 1 AB1 2 HIS B 150 THR B 152 0 SHEET 2 AB1 2 MET B 237 GLY B 239 1 O PHE B 238 N HIS B 150 SHEET 1 AB2 4 PRO B 154 MET B 157 0 SHEET 2 AB2 4 VAL B 170 PHE B 174 -1 O ARG B 173 N TYR B 155 SHEET 3 AB2 4 GLU B 207 PRO B 212 -1 O TRP B 210 N VAL B 170 SHEET 4 AB2 4 GLY B 198 TRP B 202 -1 N TYR B 201 O ARG B 209 SHEET 1 AB3 4 VAL B 163 VAL B 164 0 SHEET 2 AB3 4 VAL B 243 ILE B 249 1 O THR B 248 N VAL B 164 SHEET 3 AB3 4 ALA B 221 VAL B 226 -1 N VAL B 224 O THR B 245 SHEET 4 AB3 4 ILE B 188 ASN B 193 -1 N ASN B 193 O ALA B 221 SHEET 1 AB4 5 GLU B 271 PRO B 277 0 SHEET 2 AB4 5 ILE B 263 VAL B 268 -1 N LEU B 264 O MET B 276 SHEET 3 AB4 5 VAL B 253 ASP B 258 -1 N THR B 256 O THR B 265 SHEET 4 AB4 5 ILE B 374 VAL B 378 1 O GLU B 376 N ALA B 257 SHEET 5 AB4 5 GLY B 290 ILE B 293 -1 N TYR B 292 O VAL B 375 SHEET 1 AB5 4 ARG B 297 ASP B 304 0 SHEET 2 AB5 4 ARG B 319 GLN B 327 -1 O THR B 320 N MET B 303 SHEET 3 AB5 4 PHE B 334 SER B 337 -1 O VAL B 335 N THR B 326 SHEET 4 AB5 4 LEU B 355 VAL B 357 1 O LEU B 355 N PHE B 334 LINK SG CYS A 354 C02 6B8 A 502 1555 1555 1.98 LINK O ASP A 251 NA NA A 501 1555 1555 2.73 LINK OD1 ASP A 373 NA NA A 501 1555 1555 2.61 CISPEP 1 MET A 157 PRO A 158 0 -0.55 CISPEP 2 ASN A 193 PRO A 194 0 2.41 CISPEP 3 MET B 157 PRO B 158 0 -2.48 CISPEP 4 ASN B 193 PRO B 194 0 1.97 SITE 1 AC1 6 GLY A 165 VAL A 166 ASP A 251 GLU A 252 SITE 2 AC1 6 VAL A 253 ASP A 373 SITE 1 AC2 11 MET A 303 TYR A 318 GLY A 332 HIS A 336 SITE 2 AC2 11 TRP A 340 SER A 351 HIS A 352 GLY A 353 SITE 3 AC2 11 CYS A 354 ASN A 356 HOH A 618 SITE 1 AC3 5 ILE A 188 LYS A 189 ILE A 190 GLY A 198 SITE 2 AC3 5 TRP A 210 CRYST1 61.183 93.957 75.391 90.00 93.04 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016344 0.000000 0.000868 0.00000 SCALE2 0.000000 0.010643 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013283 0.00000