HEADER METAL BINDING PROTEIN 29-SEP-15 5E1N TITLE SELENOMETHIONINE CA2+-CALMODULIN FROM PARAMECIUM TETRAURELIA QFIT TITLE 2 DISORDER MODEL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAM; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARAMECIUM TETRAURELIA; SOURCE 3 ORGANISM_TAXID: 5888; SOURCE 4 GENE: CAM, GSPATT00015825001; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKK233-3 KEYWDS CALCIUM SIGNALING, EF HAND, CALCIUM BINDING, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LIN,H.VAN DEN BEDEM,A.T.BRUNGER,M.A.WILSON REVDAT 5 15-NOV-23 5E1N 1 REMARK REVDAT 4 27-SEP-23 5E1N 1 REMARK LINK REVDAT 3 16-MAR-16 5E1N 1 JRNL REVDAT 2 13-JAN-16 5E1N 1 JRNL REVDAT 1 25-NOV-15 5E1N 0 JRNL AUTH J.LIN,H.VAN DEN BEDEM,A.T.BRUNGER,M.A.WILSON JRNL TITL ATOMIC RESOLUTION EXPERIMENTAL PHASE INFORMATION REVEALS JRNL TITL 2 EXTENSIVE DISORDER AND BOUND 2-METHYL-2,4-PENTANEDIOL IN JRNL TITL 3 CA(2+)-CALMODULIN. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 72 83 2016 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 26894537 JRNL DOI 10.1107/S2059798315021609 REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 151006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.150 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 7542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.7720 - 3.1069 0.99 5012 294 0.1531 0.1468 REMARK 3 2 3.1069 - 2.4667 0.99 5063 260 0.1330 0.1481 REMARK 3 3 2.4667 - 2.1551 0.99 5005 294 0.1141 0.1370 REMARK 3 4 2.1551 - 1.9582 0.99 4946 268 0.1123 0.1185 REMARK 3 5 1.9582 - 1.8179 0.98 5062 226 0.1122 0.1195 REMARK 3 6 1.8179 - 1.7107 0.97 4905 258 0.1091 0.1515 REMARK 3 7 1.7107 - 1.6251 0.97 5040 212 0.1005 0.1172 REMARK 3 8 1.6251 - 1.5543 0.97 4850 276 0.0950 0.1210 REMARK 3 9 1.5543 - 1.4945 0.96 4926 304 0.0942 0.1204 REMARK 3 10 1.4945 - 1.4429 0.96 4882 246 0.0957 0.1211 REMARK 3 11 1.4429 - 1.3978 0.96 4786 264 0.1021 0.1416 REMARK 3 12 1.3978 - 1.3579 0.96 4964 258 0.1048 0.1061 REMARK 3 13 1.3579 - 1.3221 0.95 4706 288 0.1118 0.1527 REMARK 3 14 1.3221 - 1.2899 0.95 4840 278 0.1204 0.1483 REMARK 3 15 1.2899 - 1.2605 0.94 4792 250 0.1248 0.1499 REMARK 3 16 1.2605 - 1.2337 0.94 4814 250 0.1319 0.1510 REMARK 3 17 1.2337 - 1.2090 0.94 4764 234 0.1319 0.1681 REMARK 3 18 1.2090 - 1.1862 0.93 4754 214 0.1364 0.1503 REMARK 3 19 1.1862 - 1.1650 0.93 4719 282 0.1435 0.1664 REMARK 3 20 1.1650 - 1.1453 0.92 4762 254 0.1522 0.2093 REMARK 3 21 1.1453 - 1.1268 0.92 4648 208 0.1786 0.1933 REMARK 3 22 1.1268 - 1.1095 0.92 4792 248 0.1911 0.2287 REMARK 3 23 1.1095 - 1.0932 0.92 4534 254 0.2021 0.2550 REMARK 3 24 1.0932 - 1.0778 0.91 4756 238 0.2194 0.2293 REMARK 3 25 1.0778 - 1.0632 0.91 4676 226 0.2332 0.2779 REMARK 3 26 1.0632 - 1.0494 0.91 4505 238 0.2646 0.2737 REMARK 3 27 1.0494 - 1.0363 0.91 4669 262 0.2748 0.2757 REMARK 3 28 1.0363 - 1.0238 0.89 4642 216 0.2859 0.2971 REMARK 3 29 1.0238 - 1.0119 0.89 4522 222 0.2952 0.3151 REMARK 3 30 1.0119 - 1.0005 0.83 4128 220 0.3298 0.3542 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3025 REMARK 3 ANGLE : 1.489 4139 REMARK 3 CHIRALITY : 0.090 464 REMARK 3 PLANARITY : 0.007 575 REMARK 3 DIHEDRAL : 15.180 1208 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214186. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75551 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 2.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1EXR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM CACODYLATE, 50% MPD, PH REMARK 280 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 148 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 49 O HOH A 301 2.12 REMARK 500 O HOH A 304 O HOH A 404 2.12 REMARK 500 OE1 GLU A 7 O HOH A 302 2.18 REMARK 500 O HOH A 417 O HOH A 422 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 378 O HOH A 399 1456 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 42 74.50 -113.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 456 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 457 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 458 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 459 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 460 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 461 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 462 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A 463 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 464 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A 465 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A 466 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A 467 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A 468 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH A 469 DISTANCE = 7.32 ANGSTROMS REMARK 525 HOH A 470 DISTANCE = 7.44 ANGSTROMS REMARK 525 HOH A 471 DISTANCE = 7.55 ANGSTROMS REMARK 525 HOH A 472 DISTANCE = 7.62 ANGSTROMS REMARK 525 HOH A 473 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH A 474 DISTANCE = 8.38 ANGSTROMS REMARK 525 HOH A 475 DISTANCE = 8.45 ANGSTROMS REMARK 525 HOH A 476 DISTANCE = 8.61 ANGSTROMS REMARK 525 HOH A 477 DISTANCE = 8.64 ANGSTROMS REMARK 525 HOH A 478 DISTANCE = 9.01 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD1 REMARK 620 2 ASP A 20 OD1 10.0 REMARK 620 3 ASP A 22 OD1 80.1 89.4 REMARK 620 4 ASP A 22 OD1 76.2 85.3 4.9 REMARK 620 5 ASP A 24 OD1 85.8 83.0 83.7 80.4 REMARK 620 6 THR A 26 O 88.0 78.0 159.5 154.7 78.8 REMARK 620 7 THR A 26 O 82.5 72.6 156.8 151.8 79.8 5.6 REMARK 620 8 THR A 26 O 83.9 73.9 157.0 152.1 78.8 4.1 1.7 REMARK 620 9 THR A 26 O 83.7 73.8 158.9 153.9 81.7 5.3 2.2 2.9 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 206 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 47 OE1 REMARK 620 2 GLU A 47 OE1 9.1 REMARK 620 3 GLU A 47 OE2 54.7 46.8 REMARK 620 4 GLU A 47 OE2 58.2 49.3 15.4 REMARK 620 5 ASP A 58 OD1 17.4 10.6 47.6 46.2 REMARK 620 6 ASP A 58 OD2 17.6 10.8 47.5 46.0 0.2 REMARK 620 7 ASP A 58 OD2 17.5 10.7 47.6 46.1 0.1 0.1 REMARK 620 8 HOH A 359 O 83.0 92.2 130.1 140.1 97.8 98.1 97.9 REMARK 620 9 HOH A 382 O 86.9 88.3 71.4 86.1 97.9 98.0 97.9 82.3 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 ASP A 56 OD1 4.2 REMARK 620 3 ASP A 56 OD1 1.3 5.0 REMARK 620 4 ASP A 58 OD1 79.9 78.7 79.0 REMARK 620 5 ASP A 58 OD1 75.8 75.0 74.8 7.2 REMARK 620 6 ASP A 58 OD2 76.3 75.3 75.3 4.8 2.8 REMARK 620 7 ASN A 60 OD1 83.7 79.6 84.3 65.0 70.7 68.0 REMARK 620 8 ASN A 60 OD1 89.1 84.9 89.9 76.9 82.9 80.0 12.4 REMARK 620 9 ASN A 60 OD1 87.8 83.6 88.4 72.4 78.3 75.5 7.9 4.5 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 207 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD1 REMARK 620 2 ASP A 93 OD1 5.9 REMARK 620 3 ASP A 93 OD1 12.9 16.5 REMARK 620 4 ASP A 95 OD1 86.7 81.0 95.8 REMARK 620 5 ASP A 95 OD1 87.5 81.8 96.0 3.7 REMARK 620 6 ASP A 95 OD1 84.3 78.7 93.8 3.5 6.9 REMARK 620 7 ASN A 97 OD1 92.5 89.5 85.6 76.9 73.3 79.6 REMARK 620 8 ASN A 97 OD1 89.2 86.4 82.2 77.6 74.0 80.1 3.4 REMARK 620 9 LEU A 99 O 96.2 100.9 84.5 159.1 155.4 161.9 82.3 81.7 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 129 OD1 REMARK 620 2 ASP A 129 OD1 11.4 REMARK 620 3 ASP A 129 OD1 16.1 14.8 REMARK 620 4 ASP A 129 OD1 10.4 5.5 9.4 REMARK 620 5 ASP A 131 OD1 73.6 84.4 76.6 80.7 REMARK 620 6 ASP A 131 OD1 77.9 88.9 82.0 85.5 6.4 REMARK 620 7 ASP A 131 OD1 79.2 90.3 83.8 87.0 8.9 2.6 REMARK 620 8 ASP A 131 OD1 83.9 95.1 89.1 92.1 14.2 7.8 5.5 REMARK 620 9 ASP A 131 OD2 114.2 123.3 111.0 118.3 43.5 41.8 41.9 39.7 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5E1K RELATED DB: PDB REMARK 900 5E1K CONTAINS A MANUALLY BUILT DISORDER MODEL REFINED AGAINST THE REMARK 900 SAME DATASET USING SHELX-14 REMARK 900 RELATED ID: 5E1P RELATED DB: PDB DBREF 5E1N A 1 148 UNP P07463 CALM_PARTE 2 149 SEQRES 1 A 148 ALA GLU GLN LEU THR GLU GLU GLN ILE ALA GLU PHE LYS SEQRES 2 A 148 GLU ALA PHE ALA LEU PHE ASP LYS ASP GLY ASP GLY THR SEQRES 3 A 148 ILE THR THR LYS GLU LEU GLY THR VAL MSE ARG SER LEU SEQRES 4 A 148 GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP MSE ILE SEQRES 5 A 148 ASN GLU VAL ASP ALA ASP GLY ASN GLY THR ILE ASP PHE SEQRES 6 A 148 PRO GLU PHE LEU SER LEU MSE ALA ARG LYS MSE LYS GLU SEQRES 7 A 148 GLN ASP SER GLU GLU GLU LEU ILE GLU ALA PHE LYS VAL SEQRES 8 A 148 PHE ASP ARG ASP GLY ASN GLY LEU ILE SER ALA ALA GLU SEQRES 9 A 148 LEU ARG HIS VAL MSE THR ASN LEU GLY GLU LYS LEU THR SEQRES 10 A 148 ASP ASP GLU VAL ASP GLU MSE ILE ARG GLU ALA ASP ILE SEQRES 11 A 148 ASP GLY ASP GLY HIS ILE ASN TYR GLU GLU PHE VAL ARG SEQRES 12 A 148 MSE MSE VAL SER LYS MODRES 5E1N MSE A 36 MET MODIFIED RESIDUE MODRES 5E1N MSE A 51 MET MODIFIED RESIDUE MODRES 5E1N MSE A 72 MET MODIFIED RESIDUE MODRES 5E1N MSE A 76 MET MODIFIED RESIDUE MODRES 5E1N MSE A 109 MET MODIFIED RESIDUE MODRES 5E1N MSE A 124 MET MODIFIED RESIDUE MODRES 5E1N MSE A 144 MET MODIFIED RESIDUE MODRES 5E1N MSE A 145 MET MODIFIED RESIDUE HET MSE A 36 68 HET MSE A 51 41 HET MSE A 72 51 HET MSE A 76 51 HET MSE A 109 51 HET MSE A 124 68 HET MSE A 144 34 HET MSE A 145 18 HET MPD A 201 22 HET MPD A 202 22 HET CA A 203 1 HET CA A 204 1 HET CA A 205 1 HET CA A 206 1 HET CA A 207 1 HETNAM MSE SELENOMETHIONINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM CA CALCIUM ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 MPD 2(C6 H14 O2) FORMUL 4 CA 5(CA 2+) FORMUL 9 HOH *178(H2 O) HELIX 1 AA1 THR A 5 ASP A 20 1 16 HELIX 2 AA2 THR A 28 LEU A 39 1 12 HELIX 3 AA3 THR A 44 GLU A 54 1 11 HELIX 4 AA4 ASP A 64 ASP A 93 1 30 HELIX 5 AA5 SER A 101 HIS A 107 1 7 HELIX 6 AA6 HIS A 107 LEU A 112 1 6 HELIX 7 AA7 THR A 117 GLU A 127 1 11 HELIX 8 AA8 ASN A 137 SER A 147 1 11 LINK C AVAL A 35 N AMSE A 36 1555 1555 1.32 LINK C BVAL A 35 N BMSE A 36 1555 1555 1.33 LINK C CVAL A 35 N CMSE A 36 1555 1555 1.33 LINK C DVAL A 35 N DMSE A 36 1555 1555 1.33 LINK C AMSE A 36 N ARG A 37 1555 1555 1.32 LINK C BMSE A 36 N ARG A 37 1555 1555 1.32 LINK C CMSE A 36 N ARG A 37 1555 1555 1.32 LINK C DMSE A 36 N ARG A 37 1555 1555 1.32 LINK C BASP A 50 N MSE A 51 1555 1555 1.33 LINK C CASP A 50 N MSE A 51 1555 1555 1.34 LINK C DASP A 50 N MSE A 51 1555 1555 1.35 LINK C MSE A 51 N BILE A 52 1555 1555 1.32 LINK C MSE A 51 N CILE A 52 1555 1555 1.32 LINK C MSE A 51 N DILE A 52 1555 1555 1.31 LINK C BLEU A 71 N BMSE A 72 1555 1555 1.33 LINK C CLEU A 71 N CMSE A 72 1555 1555 1.33 LINK C DLEU A 71 N DMSE A 72 1555 1555 1.32 LINK C BMSE A 72 N ALA A 73 1555 1555 1.32 LINK C CMSE A 72 N ALA A 73 1555 1555 1.33 LINK C DMSE A 72 N ALA A 73 1555 1555 1.33 LINK C LYS A 75 N BMSE A 76 1555 1555 1.32 LINK C LYS A 75 N CMSE A 76 1555 1555 1.33 LINK C LYS A 75 N DMSE A 76 1555 1555 1.32 LINK C BMSE A 76 N BLYS A 77 1555 1555 1.33 LINK C CMSE A 76 N CLYS A 77 1555 1555 1.34 LINK C DMSE A 76 N DLYS A 77 1555 1555 1.32 LINK C BVAL A 108 N BMSE A 109 1555 1555 1.33 LINK C CVAL A 108 N CMSE A 109 1555 1555 1.33 LINK C DVAL A 108 N DMSE A 109 1555 1555 1.32 LINK C BMSE A 109 N BTHR A 110 1555 1555 1.33 LINK C CMSE A 109 N CTHR A 110 1555 1555 1.33 LINK C DMSE A 109 N DTHR A 110 1555 1555 1.33 LINK C GLU A 123 N AMSE A 124 1555 1555 1.34 LINK C GLU A 123 N BMSE A 124 1555 1555 1.34 LINK C GLU A 123 N CMSE A 124 1555 1555 1.34 LINK C GLU A 123 N DMSE A 124 1555 1555 1.33 LINK C AMSE A 124 N AILE A 125 1555 1555 1.33 LINK C BMSE A 124 N BILE A 125 1555 1555 1.33 LINK C CMSE A 124 N CILE A 125 1555 1555 1.32 LINK C DMSE A 124 N DILE A 125 1555 1555 1.32 LINK C BARG A 143 N BMSE A 144 1555 1555 1.33 LINK C DARG A 143 N DMSE A 144 1555 1555 1.33 LINK C BMSE A 144 N MSE A 145 1555 1555 1.32 LINK C DMSE A 144 N MSE A 145 1555 1555 1.33 LINK C MSE A 145 N VAL A 146 1555 1555 1.32 LINK OD1BASP A 20 CA CA A 203 1555 1555 2.31 LINK OD1DASP A 20 CA CA A 203 1555 1555 2.34 LINK OD1BASP A 22 CA CA A 203 1555 1555 2.54 LINK OD1DASP A 22 CA CA A 203 1555 1555 2.32 LINK OD1 ASP A 24 CA CA A 203 1555 1555 2.33 LINK O ATHR A 26 CA CA A 203 1555 1555 2.33 LINK O BTHR A 26 CA CA A 203 1555 1555 2.45 LINK O CTHR A 26 CA CA A 203 1555 1555 2.65 LINK O DTHR A 26 CA CA A 203 1555 1555 2.10 LINK OE1AGLU A 31 CA CA A 203 1555 1555 2.43 LINK OE1BGLU A 31 CA CA A 203 1555 1555 2.51 LINK OE1CGLU A 31 CA CA A 203 1555 1555 2.47 LINK OE1DGLU A 31 CA CA A 203 1555 1555 2.49 LINK OE2AGLU A 31 CA CA A 203 1555 1555 2.61 LINK OE2BGLU A 31 CA CA A 203 1555 1555 2.40 LINK OE2CGLU A 31 CA CA A 203 1555 1555 2.41 LINK OE2DGLU A 31 CA CA A 203 1555 1555 2.40 LINK OE1BGLU A 47 CA CA A 206 1555 1555 2.47 LINK OE1DGLU A 47 CA CA A 206 1555 1555 2.50 LINK OE2BGLU A 47 CA CA A 206 1555 1555 2.35 LINK OE2DGLU A 47 CA CA A 206 1555 1555 2.70 LINK OD1BASP A 56 CA CA A 204 1555 1555 2.43 LINK OD1CASP A 56 CA CA A 204 1555 1555 2.33 LINK OD1DASP A 56 CA CA A 204 1555 1555 2.40 LINK OD1CASP A 58 CA CA A 204 1555 1555 2.38 LINK OD1DASP A 58 CA CA A 204 1555 1555 2.52 LINK OD2BASP A 58 CA CA A 204 1555 1555 2.43 LINK OD1BASP A 58 CA CA A 206 1555 1565 2.48 LINK OD2CASP A 58 CA CA A 206 1555 1565 2.31 LINK OD2DASP A 58 CA CA A 206 1555 1565 2.41 LINK OD1BASN A 60 CA CA A 204 1555 1555 2.29 LINK OD1CASN A 60 CA CA A 204 1555 1555 2.55 LINK OD1DASN A 60 CA CA A 204 1555 1555 2.32 LINK O THR A 62 CA CA A 204 1555 1555 2.39 LINK OE1BGLU A 67 CA CA A 204 1555 1555 2.54 LINK OE1CGLU A 67 CA CA A 204 1555 1555 2.54 LINK OE1DGLU A 67 CA CA A 204 1555 1555 2.43 LINK OE2BGLU A 67 CA CA A 204 1555 1555 2.84 LINK OE2CGLU A 67 CA CA A 204 1555 1555 2.79 LINK OE2DGLU A 67 CA CA A 204 1555 1555 2.36 LINK OD1BASP A 93 CA CA A 207 1555 1555 2.44 LINK OD1CASP A 93 CA CA A 207 1555 1555 2.20 LINK OD1DASP A 93 CA CA A 207 1555 1555 2.33 LINK OD1BASP A 95 CA CA A 207 1555 1555 2.37 LINK OD1CASP A 95 CA CA A 207 1555 1555 2.31 LINK OD1DASP A 95 CA CA A 207 1555 1555 2.35 LINK OD1AASN A 97 CA CA A 207 1555 1555 2.42 LINK OD1CASN A 97 CA CA A 207 1555 1555 2.38 LINK O ALEU A 99 CA CA A 207 1555 1555 2.44 LINK O BLEU A 99 CA CA A 207 1555 1555 2.22 LINK O CLEU A 99 CA CA A 207 1555 1555 2.46 LINK OE1AGLU A 104 CA CA A 207 1555 1555 2.54 LINK OE1BGLU A 104 CA CA A 207 1555 1555 2.28 LINK OE2AGLU A 104 CA CA A 207 1555 1555 2.66 LINK OE2BGLU A 104 CA CA A 207 1555 1555 2.33 LINK OD1AASP A 129 CA CA A 205 1555 1555 2.34 LINK OD1BASP A 129 CA CA A 205 1555 1555 2.52 LINK OD1CASP A 129 CA CA A 205 1555 1555 2.18 LINK OD1DASP A 129 CA CA A 205 1555 1555 2.46 LINK OD1AASP A 131 CA CA A 205 1555 1555 2.29 LINK OD1BASP A 131 CA CA A 205 1555 1555 2.40 LINK OD1CASP A 131 CA CA A 205 1555 1555 2.36 LINK OD1DASP A 131 CA CA A 205 1555 1555 2.38 LINK OD2AASP A 131 CA CA A 205 1555 1555 3.20 LINK OD1AASP A 133 CA CA A 205 1555 1555 2.34 LINK OD1BASP A 133 CA CA A 205 1555 1555 2.54 LINK OD1CASP A 133 CA CA A 205 1555 1555 2.34 LINK OD1DASP A 133 CA CA A 205 1555 1555 2.32 LINK O AHIS A 135 CA CA A 205 1555 1555 2.33 LINK O BHIS A 135 CA CA A 205 1555 1555 2.23 LINK O CHIS A 135 CA CA A 205 1555 1555 2.51 LINK O DHIS A 135 CA CA A 205 1555 1555 2.25 LINK OE1BGLU A 140 CA CA A 205 1555 1555 2.46 LINK OE1DGLU A 140 CA CA A 205 1555 1555 2.43 LINK OE2BGLU A 140 CA CA A 205 1555 1555 2.56 LINK OE2DGLU A 140 CA CA A 205 1555 1555 2.53 LINK CA CA A 203 O HOH A 411 1555 1555 2.36 LINK CA CA A 204 O HOH A 333 1555 1555 2.41 LINK CA CA A 204 O HOH A 366 1555 1555 2.70 LINK CA CA A 205 O HOH A 350 1555 1555 2.42 LINK CA CA A 206 O HOH A 359 1555 1555 2.39 LINK CA CA A 206 O HOH A 382 1555 1555 2.42 LINK CA CA A 206 O HOH A 385 1555 1555 2.40 LINK CA CA A 206 O HOH A 423 1555 1555 2.40 LINK CA CA A 207 O HOH A 401 1555 1555 2.37 SITE 1 AC1 6 PHE A 92 MSE A 109 MSE A 124 ILE A 136 SITE 2 AC1 6 MSE A 145 HOH A 318 SITE 1 AC2 9 ALA A 10 LYS A 13 ASN A 53 GLU A 54 SITE 2 AC2 9 VAL A 55 ASP A 56 ALA A 57 ARG A 74 SITE 3 AC2 9 HOH A 413 SITE 1 AC3 6 ASP A 20 ASP A 22 ASP A 24 THR A 26 SITE 2 AC3 6 GLU A 31 HOH A 411 SITE 1 AC4 7 ASP A 56 ASP A 58 ASN A 60 THR A 62 SITE 2 AC4 7 GLU A 67 HOH A 333 HOH A 366 SITE 1 AC5 5 ASP A 129 ASP A 131 HIS A 135 GLU A 140 SITE 2 AC5 5 HOH A 350 SITE 1 AC6 6 GLU A 47 ASP A 58 HOH A 359 HOH A 382 SITE 2 AC6 6 HOH A 385 HOH A 423 SITE 1 AC7 6 ASP A 93 ASP A 95 ASN A 97 LEU A 99 SITE 2 AC7 6 GLU A 104 HOH A 401 CRYST1 25.036 29.409 52.793 89.45 86.29 82.39 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.039942 -0.005337 -0.002584 0.00000 SCALE2 0.000000 0.034305 -0.000036 0.00000 SCALE3 0.000000 0.000000 0.018982 0.00000