data_5E21 # _entry.id 5E21 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5E21 WWPDB D_1000214214 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'Model with alternate conformations for the same data set.' 5E1Y unspecified PDB '5E11 is a data set for the same protein obtained by Laue crystallography' 5E11 unspecified PDB . 5E22 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5E21 _pdbx_database_status.recvd_initial_deposition_date 2015-09-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hekstra, D.R.' 1 'White, K.I.' 2 'Socolich, M.A.' 3 'Ranganathan, R.' 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 540 _citation.language ? _citation.page_first 400 _citation.page_last 405 _citation.title 'Electric-field-stimulated protein mechanics.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nature20571 _citation.pdbx_database_id_PubMed 27926732 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hekstra, D.R.' 1 primary 'White, K.I.' 2 primary 'Socolich, M.A.' 3 primary 'Henning, R.W.' 4 primary 'Srajer, V.' 5 primary 'Ranganathan, R.' 6 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 117.41 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5E21 _cell.details ? _cell.formula_units_Z ? _cell.length_a 64.912 _cell.length_a_esd ? _cell.length_b 39.288 _cell.length_b_esd ? _cell.length_c 38.800 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E21 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ligand of Numb protein X 2' 10310.739 1 ? F338L 'Second PDZ domain (UNP residues 336-424)' ? 2 water nat water 18.015 99 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Numb-binding protein 2,PDZ domain-containing RING finger protein 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMEILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGER VNLTIARPGKPEIEL ; _entity_poly.pdbx_seq_one_letter_code_can ;SMEILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGER VNLTIARPGKPEIEL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 GLU n 1 4 ILE n 1 5 LEU n 1 6 GLN n 1 7 VAL n 1 8 ALA n 1 9 LEU n 1 10 HIS n 1 11 LYS n 1 12 ARG n 1 13 ASP n 1 14 SER n 1 15 GLY n 1 16 GLU n 1 17 GLN n 1 18 LEU n 1 19 GLY n 1 20 ILE n 1 21 LYS n 1 22 LEU n 1 23 VAL n 1 24 ARG n 1 25 ARG n 1 26 THR n 1 27 ASP n 1 28 GLU n 1 29 PRO n 1 30 GLY n 1 31 VAL n 1 32 PHE n 1 33 ILE n 1 34 LEU n 1 35 ASP n 1 36 LEU n 1 37 LEU n 1 38 GLU n 1 39 GLY n 1 40 GLY n 1 41 LEU n 1 42 ALA n 1 43 ALA n 1 44 GLN n 1 45 ASP n 1 46 GLY n 1 47 ARG n 1 48 LEU n 1 49 SER n 1 50 SER n 1 51 ASN n 1 52 ASP n 1 53 ARG n 1 54 VAL n 1 55 LEU n 1 56 ALA n 1 57 ILE n 1 58 ASN n 1 59 GLY n 1 60 HIS n 1 61 ASP n 1 62 LEU n 1 63 LYS n 1 64 TYR n 1 65 GLY n 1 66 THR n 1 67 PRO n 1 68 GLU n 1 69 LEU n 1 70 ALA n 1 71 ALA n 1 72 GLN n 1 73 ILE n 1 74 ILE n 1 75 GLN n 1 76 ALA n 1 77 SER n 1 78 GLY n 1 79 GLU n 1 80 ARG n 1 81 VAL n 1 82 ASN n 1 83 LEU n 1 84 THR n 1 85 ILE n 1 86 ALA n 1 87 ARG n 1 88 PRO n 1 89 GLY n 1 90 LYS n 1 91 PRO n 1 92 GLU n 1 93 ILE n 1 94 GLU n 1 95 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 95 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'LNX2, PDZRN1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details 'SGC clone LNX2A-c033' _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNic28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LNX2_HUMAN _struct_ref.pdbx_db_accession Q8N448 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EIFQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVN LTIARPGKP ; _struct_ref.pdbx_align_begin 336 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5E21 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 91 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8N448 _struct_ref_seq.db_align_beg 336 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 424 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 336 _struct_ref_seq.pdbx_auth_seq_align_end 424 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5E21 SER A 1 ? UNP Q8N448 ? ? 'expression tag' 334 1 1 5E21 MET A 2 ? UNP Q8N448 ? ? 'expression tag' 335 2 1 5E21 LEU A 5 ? UNP Q8N448 PHE 338 'engineered mutation' 338 3 1 5E21 GLU A 92 ? UNP Q8N448 ? ? 'See REMARK 999' 425 4 1 5E21 ILE A 93 ? UNP Q8N448 ? ? 'See REMARK 999' 426 5 1 5E21 GLU A 94 ? UNP Q8N448 ? ? 'See REMARK 999' 427 6 1 5E21 LEU A 95 ? UNP Q8N448 ? ? 'See REMARK 999' 428 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5E21 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 42.25 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '25-29% PEG-300, 57 mM citric acid, 43 mM (Na2HPO4 pH 10.1)' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 277 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-06-25 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97945 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97945 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5E21 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.011 _reflns.d_resolution_low 28.95 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 35251 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 77.59 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.8 _reflns.pdbx_Rmerge_I_obs 0.0507 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.84 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.011 _reflns_shell.d_res_low 1.047 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.45 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 3.04 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.54 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 1.2 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5E21 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.011 _refine.ls_d_res_low 28.95 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 35244 _refine.ls_number_reflns_R_free 1552 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 77.58 _refine.ls_percent_reflns_R_free 4.40 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1266 _refine.ls_R_factor_R_free 0.1396 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1259 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 2VWR _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 17.00 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.05 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 719 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 99 _refine_hist.number_atoms_total 818 _refine_hist.d_res_high 1.011 _refine_hist.d_res_low 28.95 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.023 ? 726 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.879 ? 980 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 12.472 ? 280 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.152 ? 115 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.011 ? 131 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.0107 1.0433 . . 5 97 2.00 . . . 0.4241 . 0.4630 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.0433 1.0806 . . 31 748 19.00 . . . 0.3910 . 0.3199 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.0806 1.1239 . . 101 2104 54.00 . . . 0.2705 . 0.2361 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.1239 1.1750 . . 150 3514 89.00 . . . 0.1926 . 0.1625 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.1750 1.2370 . . 183 3835 98.00 . . . 0.1742 . 0.1315 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2370 1.3145 . . 178 3876 98.00 . . . 0.1148 . 0.1101 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.3145 1.4160 . . 178 3907 99.00 . . . 0.1410 . 0.0993 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4160 1.5585 . . 176 3870 98.00 . . . 0.1234 . 0.0989 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5585 1.7840 . . 183 3898 99.00 . . . 0.1298 . 0.1031 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7840 2.2475 . . 178 3893 98.00 . . . 0.1217 . 0.1130 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2475 34.4647 . . 189 3950 98.00 . . . 0.1413 . 0.1388 . . . . . . . . . . # _struct.entry_id 5E21 _struct.title 'PDZ2 of LNX2 at 277K,single conformer model' _struct.pdbx_descriptor 'Ligand of Numb protein X 2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5E21 _struct_keywords.text 'Room temperature, PROTEIN BINDING' _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 40 ? GLY A 46 ? GLY A 373 GLY A 379 1 ? 7 HELX_P HELX_P2 AA2 THR A 66 ? ALA A 76 ? THR A 399 ALA A 409 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 MET A 2 ? HIS A 10 ? MET A 335 HIS A 343 AA1 2 ARG A 80 ? PRO A 88 ? ARG A 413 PRO A 421 AA1 3 ARG A 53 ? ILE A 57 ? ARG A 386 ILE A 390 AA1 4 VAL A 31 ? LEU A 36 ? VAL A 364 LEU A 369 AA1 5 ILE A 20 ? VAL A 23 ? ILE A 353 VAL A 356 AA2 1 MET A 2 ? HIS A 10 ? MET A 335 HIS A 343 AA2 2 ARG A 80 ? PRO A 88 ? ARG A 413 PRO A 421 AA2 3 ARG A 53 ? ILE A 57 ? ARG A 386 ILE A 390 AA2 4 HIS A 60 ? ASP A 61 ? HIS A 393 ASP A 394 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 7 ? N VAL A 340 O LEU A 83 ? O LEU A 416 AA1 2 3 O ALA A 86 ? O ALA A 419 N ARG A 53 ? N ARG A 386 AA1 3 4 O VAL A 54 ? O VAL A 387 N VAL A 31 ? N VAL A 364 AA1 4 5 O LEU A 34 ? O LEU A 367 N LYS A 21 ? N LYS A 354 AA2 1 2 N VAL A 7 ? N VAL A 340 O LEU A 83 ? O LEU A 416 AA2 2 3 O ALA A 86 ? O ALA A 419 N ARG A 53 ? N ARG A 386 AA2 3 4 N ILE A 57 ? N ILE A 390 O HIS A 60 ? O HIS A 393 # _atom_sites.entry_id 5E21 _atom_sites.fract_transf_matrix[1][1] 0.015405 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007988 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025453 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029032 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 334 334 SER SER A . n A 1 2 MET 2 335 335 MET MET A . n A 1 3 GLU 3 336 336 GLU GLU A . n A 1 4 ILE 4 337 337 ILE ILE A . n A 1 5 LEU 5 338 338 LEU LEU A . n A 1 6 GLN 6 339 339 GLN GLN A . n A 1 7 VAL 7 340 340 VAL VAL A . n A 1 8 ALA 8 341 341 ALA ALA A . n A 1 9 LEU 9 342 342 LEU LEU A . n A 1 10 HIS 10 343 343 HIS HIS A . n A 1 11 LYS 11 344 344 LYS LYS A . n A 1 12 ARG 12 345 345 ARG ARG A . n A 1 13 ASP 13 346 346 ASP ASP A . n A 1 14 SER 14 347 347 SER SER A . n A 1 15 GLY 15 348 348 GLY GLY A . n A 1 16 GLU 16 349 349 GLU GLU A . n A 1 17 GLN 17 350 350 GLN GLN A . n A 1 18 LEU 18 351 351 LEU LEU A . n A 1 19 GLY 19 352 352 GLY GLY A . n A 1 20 ILE 20 353 353 ILE ILE A . n A 1 21 LYS 21 354 354 LYS LYS A . n A 1 22 LEU 22 355 355 LEU LEU A . n A 1 23 VAL 23 356 356 VAL VAL A . n A 1 24 ARG 24 357 357 ARG ARG A . n A 1 25 ARG 25 358 358 ARG ARG A . n A 1 26 THR 26 359 359 THR THR A . n A 1 27 ASP 27 360 360 ASP ASP A . n A 1 28 GLU 28 361 361 GLU GLU A . n A 1 29 PRO 29 362 362 PRO PRO A . n A 1 30 GLY 30 363 363 GLY GLY A . n A 1 31 VAL 31 364 364 VAL VAL A . n A 1 32 PHE 32 365 365 PHE PHE A . n A 1 33 ILE 33 366 366 ILE ILE A . n A 1 34 LEU 34 367 367 LEU LEU A . n A 1 35 ASP 35 368 368 ASP ASP A . n A 1 36 LEU 36 369 369 LEU LEU A . n A 1 37 LEU 37 370 370 LEU LEU A . n A 1 38 GLU 38 371 371 GLU GLU A . n A 1 39 GLY 39 372 372 GLY GLY A . n A 1 40 GLY 40 373 373 GLY GLY A . n A 1 41 LEU 41 374 374 LEU LEU A . n A 1 42 ALA 42 375 375 ALA ALA A . n A 1 43 ALA 43 376 376 ALA ALA A . n A 1 44 GLN 44 377 377 GLN GLN A . n A 1 45 ASP 45 378 378 ASP ASP A . n A 1 46 GLY 46 379 379 GLY GLY A . n A 1 47 ARG 47 380 380 ARG ARG A . n A 1 48 LEU 48 381 381 LEU LEU A . n A 1 49 SER 49 382 382 SER SER A . n A 1 50 SER 50 383 383 SER SER A . n A 1 51 ASN 51 384 384 ASN ASN A . n A 1 52 ASP 52 385 385 ASP ASP A . n A 1 53 ARG 53 386 386 ARG ARG A . n A 1 54 VAL 54 387 387 VAL VAL A . n A 1 55 LEU 55 388 388 LEU LEU A . n A 1 56 ALA 56 389 389 ALA ALA A . n A 1 57 ILE 57 390 390 ILE ILE A . n A 1 58 ASN 58 391 391 ASN ASN A . n A 1 59 GLY 59 392 392 GLY GLY A . n A 1 60 HIS 60 393 393 HIS HIS A . n A 1 61 ASP 61 394 394 ASP ASP A . n A 1 62 LEU 62 395 395 LEU LEU A . n A 1 63 LYS 63 396 396 LYS LYS A . n A 1 64 TYR 64 397 397 TYR TYR A . n A 1 65 GLY 65 398 398 GLY GLY A . n A 1 66 THR 66 399 399 THR THR A . n A 1 67 PRO 67 400 400 PRO PRO A . n A 1 68 GLU 68 401 401 GLU GLU A . n A 1 69 LEU 69 402 402 LEU LEU A . n A 1 70 ALA 70 403 403 ALA ALA A . n A 1 71 ALA 71 404 404 ALA ALA A . n A 1 72 GLN 72 405 405 GLN GLN A . n A 1 73 ILE 73 406 406 ILE ILE A . n A 1 74 ILE 74 407 407 ILE ILE A . n A 1 75 GLN 75 408 408 GLN GLN A . n A 1 76 ALA 76 409 409 ALA ALA A . n A 1 77 SER 77 410 410 SER SER A . n A 1 78 GLY 78 411 411 GLY GLY A . n A 1 79 GLU 79 412 412 GLU GLU A . n A 1 80 ARG 80 413 413 ARG ARG A . n A 1 81 VAL 81 414 414 VAL VAL A . n A 1 82 ASN 82 415 415 ASN ASN A . n A 1 83 LEU 83 416 416 LEU LEU A . n A 1 84 THR 84 417 417 THR THR A . n A 1 85 ILE 85 418 418 ILE ILE A . n A 1 86 ALA 86 419 419 ALA ALA A . n A 1 87 ARG 87 420 420 ARG ARG A . n A 1 88 PRO 88 421 421 PRO PRO A . n A 1 89 GLY 89 422 422 GLY GLY A . n A 1 90 LYS 90 423 423 LYS LYS A . n A 1 91 PRO 91 424 424 PRO PRO A . n A 1 92 GLU 92 425 425 GLU GLU A . n A 1 93 ILE 93 426 426 ILE ILE A . n A 1 94 GLU 94 427 427 GLU GLU A . n A 1 95 LEU 95 428 428 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 501 32 HOH HOH A . B 2 HOH 2 502 44 HOH HOH A . B 2 HOH 3 503 82 HOH HOH A . B 2 HOH 4 504 85 HOH HOH A . B 2 HOH 5 505 49 HOH HOH A . B 2 HOH 6 506 96 HOH HOH A . B 2 HOH 7 507 75 HOH HOH A . B 2 HOH 8 508 69 HOH HOH A . B 2 HOH 9 509 86 HOH HOH A . B 2 HOH 10 510 6 HOH HOH A . B 2 HOH 11 511 14 HOH HOH A . B 2 HOH 12 512 11 HOH HOH A . B 2 HOH 13 513 52 HOH HOH A . B 2 HOH 14 514 103 HOH HOH A . B 2 HOH 15 515 54 HOH HOH A . B 2 HOH 16 516 20 HOH HOH A . B 2 HOH 17 517 8 HOH HOH A . B 2 HOH 18 518 22 HOH HOH A . B 2 HOH 19 519 34 HOH HOH A . B 2 HOH 20 520 1 HOH HOH A . B 2 HOH 21 521 7 HOH HOH A . B 2 HOH 22 522 99 HOH HOH A . B 2 HOH 23 523 3 HOH HOH A . B 2 HOH 24 524 2 HOH HOH A . B 2 HOH 25 525 48 HOH HOH A . B 2 HOH 26 526 40 HOH HOH A . B 2 HOH 27 527 80 HOH HOH A . B 2 HOH 28 528 30 HOH HOH A . B 2 HOH 29 529 23 HOH HOH A . B 2 HOH 30 530 41 HOH HOH A . B 2 HOH 31 531 21 HOH HOH A . B 2 HOH 32 532 87 HOH HOH A . B 2 HOH 33 533 24 HOH HOH A . B 2 HOH 34 534 35 HOH HOH A . B 2 HOH 35 535 28 HOH HOH A . B 2 HOH 36 536 13 HOH HOH A . B 2 HOH 37 537 17 HOH HOH A . B 2 HOH 38 538 9 HOH HOH A . B 2 HOH 39 539 56 HOH HOH A . B 2 HOH 40 540 36 HOH HOH A . B 2 HOH 41 541 25 HOH HOH A . B 2 HOH 42 542 74 HOH HOH A . B 2 HOH 43 543 43 HOH HOH A . B 2 HOH 44 544 63 HOH HOH A . B 2 HOH 45 545 4 HOH HOH A . B 2 HOH 46 546 47 HOH HOH A . B 2 HOH 47 547 19 HOH HOH A . B 2 HOH 48 548 60 HOH HOH A . B 2 HOH 49 549 5 HOH HOH A . B 2 HOH 50 550 37 HOH HOH A . B 2 HOH 51 551 61 HOH HOH A . B 2 HOH 52 552 45 HOH HOH A . B 2 HOH 53 553 12 HOH HOH A . B 2 HOH 54 554 62 HOH HOH A . B 2 HOH 55 555 53 HOH HOH A . B 2 HOH 56 556 15 HOH HOH A . B 2 HOH 57 557 18 HOH HOH A . B 2 HOH 58 558 29 HOH HOH A . B 2 HOH 59 559 46 HOH HOH A . B 2 HOH 60 560 55 HOH HOH A . B 2 HOH 61 561 88 HOH HOH A . B 2 HOH 62 562 50 HOH HOH A . B 2 HOH 63 563 59 HOH HOH A . B 2 HOH 64 564 31 HOH HOH A . B 2 HOH 65 565 27 HOH HOH A . B 2 HOH 66 566 33 HOH HOH A . B 2 HOH 67 567 76 HOH HOH A . B 2 HOH 68 568 42 HOH HOH A . B 2 HOH 69 569 26 HOH HOH A . B 2 HOH 70 570 73 HOH HOH A . B 2 HOH 71 571 109 HOH HOH A . B 2 HOH 72 572 91 HOH HOH A . B 2 HOH 73 573 10 HOH HOH A . B 2 HOH 74 574 78 HOH HOH A . B 2 HOH 75 575 16 HOH HOH A . B 2 HOH 76 576 95 HOH HOH A . B 2 HOH 77 577 90 HOH HOH A . B 2 HOH 78 578 58 HOH HOH A . B 2 HOH 79 579 98 HOH HOH A . B 2 HOH 80 580 79 HOH HOH A . B 2 HOH 81 581 72 HOH HOH A . B 2 HOH 82 582 100 HOH HOH A . B 2 HOH 83 583 57 HOH HOH A . B 2 HOH 84 584 105 HOH HOH A . B 2 HOH 85 585 65 HOH HOH A . B 2 HOH 86 586 38 HOH HOH A . B 2 HOH 87 587 101 HOH HOH A . B 2 HOH 88 588 67 HOH HOH A . B 2 HOH 89 589 107 HOH HOH A . B 2 HOH 90 590 68 HOH HOH A . B 2 HOH 91 591 66 HOH HOH A . B 2 HOH 92 592 83 HOH HOH A . B 2 HOH 93 593 81 HOH HOH A . B 2 HOH 94 594 106 HOH HOH A . B 2 HOH 95 595 94 HOH HOH A . B 2 HOH 96 596 70 HOH HOH A . B 2 HOH 97 597 84 HOH HOH A . B 2 HOH 98 598 39 HOH HOH A . B 2 HOH 99 599 108 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-12-07 2 'Structure model' 1 1 2017-01-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _pdbx_entry_details.compound_details ? _pdbx_entry_details.entry_id 5E21 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'Authors state that the C-terminal extension (residues 425-428) contains a putative ligand motif.' _pdbx_entry_details.source_details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 HE21 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLN _pdbx_validate_close_contact.auth_seq_id_1 350 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 501 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.57 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 HE22 A GLN 350 ? ? 1_555 HE22 A GLN 350 ? ? 2_555 1.25 2 1 O A HOH 504 ? ? 1_555 O A HOH 548 ? ? 3_546 2.00 3 1 O A HOH 558 ? ? 1_555 O A HOH 592 ? ? 3_546 2.13 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 394 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 394 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 394 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 124.36 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 6.06 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 599 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.33 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . _pdbx_distant_solvent_atoms.label_comp_id ? _pdbx_distant_solvent_atoms.label_asym_id ? _pdbx_distant_solvent_atoms.label_seq_id ? _pdbx_distant_solvent_atoms.label_atom_id ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 396 ? CE ? A LYS 63 CE 2 1 Y 1 A LYS 396 ? NZ ? A LYS 63 NZ 3 1 Y 1 A GLU 401 ? CD ? A GLU 68 CD 4 1 Y 1 A GLU 401 ? OE1 ? A GLU 68 OE1 5 1 Y 1 A GLU 401 ? OE2 ? A GLU 68 OE2 # _pdbx_audit_support.funding_organization 'Robert A. Welch Foundation' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number I-1366 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #