HEADER PROTEIN BINDING 30-SEP-15 5E22 TITLE THE SECOND PDZ DOMAIN OF LIGAND OF NUMB PROTEIN X 2 IN THE PRESENCE OF TITLE 2 AN ELECTRIC FIELD OF ~1 MV/CM ALONG THE CRYSTALLOGRAPHIC X AXIS, WITH TITLE 3 EIGHTFOLD EXTRAPOLATION OF STRUCTURE FACTOR DIFFERENCES. COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGAND OF NUMB PROTEIN X 2; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: SECOND PDZ DOMAIN (UNP RESIDUES 336-424); COMPND 5 SYNONYM: NUMB-BINDING PROTEIN 2,PDZ DOMAIN-CONTAINING RING FINGER COMPND 6 PROTEIN 1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LNX2, PDZRN1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28 KEYWDS ELECTRIC FIELD PERTURBATION, HIGH VOLTAGE, TIME-RESOLVED KEYWDS 2 CRYSTALLOGRAPHY., PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR D.R.HEKSTRA,K.I.WHITE,M.A.SOCOLICH,R.W.HENNING,V.SRAJER,R.RANGANATHAN REVDAT 4 27-SEP-23 5E22 1 REMARK REVDAT 3 22-NOV-17 5E22 1 REMARK REVDAT 2 11-JAN-17 5E22 1 JRNL REVDAT 1 07-DEC-16 5E22 0 JRNL AUTH D.R.HEKSTRA,K.I.WHITE,M.A.SOCOLICH,R.W.HENNING,V.SRAJER, JRNL AUTH 2 R.RANGANATHAN JRNL TITL ELECTRIC-FIELD-STIMULATED PROTEIN MECHANICS. JRNL REF NATURE V. 540 400 2016 JRNL REFN ESSN 1476-4687 JRNL PMID 27926732 JRNL DOI 10.1038/NATURE20571 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 67.6 REMARK 3 NUMBER OF REFLECTIONS : 10873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.291 REMARK 3 R VALUE (WORKING SET) : 0.289 REMARK 3 FREE R VALUE : 0.313 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9541 - 3.5910 0.90 1620 194 0.2599 0.3073 REMARK 3 2 3.5910 - 2.8511 0.93 1671 198 0.2643 0.2699 REMARK 3 3 2.8511 - 2.4909 0.84 1498 157 0.2943 0.2886 REMARK 3 4 2.4909 - 2.2633 0.80 1479 148 0.2854 0.3145 REMARK 3 5 2.2633 - 2.1011 0.71 1281 146 0.3130 0.3653 REMARK 3 6 2.1011 - 1.9773 0.60 1087 111 0.3506 0.3181 REMARK 3 7 1.9773 - 1.8783 0.45 817 97 0.3593 0.4151 REMARK 3 8 1.8783 - 1.7965 0.19 331 38 0.3770 0.3506 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 1744 REMARK 3 ANGLE : 1.803 2369 REMARK 3 CHIRALITY : 0.094 277 REMARK 3 PLANARITY : 0.008 319 REMARK 3 DIHEDRAL : 16.967 680 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E22 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214169. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 289 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : L REMARK 200 WAVELENGTH OR RANGE (A) : 1.02-1.16 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : U23 AND U27; KB MIRROR SYSTEM. REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX340-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PRECOGNITION, EPINORM REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11291 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.797 REMARK 200 RESOLUTION RANGE LOW (A) : 28.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 70.2 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.07650 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 17.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: LAUE REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5E11 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27-31% PEG-300, 43 MM CITRIC ACID, 35 REMARK 280 MM NAH2PO4, PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 360 CG OD1 OD2 REMARK 470 GLU B 401 CD OE1 OE2 REMARK 470 SER A 347 OG REMARK 470 GLN A 350 CG CD OE1 NE2 REMARK 470 LYS A 396 CE NZ REMARK 470 GLU A 401 CD OE1 OE2 REMARK 470 GLU A 412 CG CD OE1 OE2 REMARK 470 GLU A 425 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG B 345 O HOH B 601 1.34 REMARK 500 H GLN B 339 O HOH B 616 1.60 REMARK 500 HD1 HIS A 393 O HOH A 508 1.60 REMARK 500 O HOH B 607 O HOH B 658 1.67 REMARK 500 SD MET A 335 O HOH A 576 1.81 REMARK 500 NH2 ARG B 345 O HOH B 601 1.88 REMARK 500 O HOH B 662 O HOH B 669 1.89 REMARK 500 O HOH A 514 O HOH A 559 1.89 REMARK 500 O HOH A 507 O HOH A 569 1.91 REMARK 500 O HOH B 662 O HOH B 667 1.94 REMARK 500 NH1 ARG B 357 O HOH B 602 1.97 REMARK 500 O HOH A 501 O HOH A 568 2.00 REMARK 500 O HOH A 554 O HOH A 574 2.00 REMARK 500 O ASP A 394 O HOH A 501 2.01 REMARK 500 OG SER B 347 O HOH B 604 2.01 REMARK 500 O HOH A 508 O HOH A 536 2.01 REMARK 500 O GLU B 371 O HOH B 605 2.01 REMARK 500 OD2 ASP A 368 O HOH A 502 2.03 REMARK 500 OH TYR B 397 O HOH B 606 2.04 REMARK 500 O ALA B 376 O HOH B 607 2.05 REMARK 500 O HOH A 564 O HOH A 583 2.08 REMARK 500 O HOH A 519 O HOH A 575 2.10 REMARK 500 O HOH A 553 O HOH A 572 2.13 REMARK 500 O VAL A 414 O HOH A 503 2.15 REMARK 500 O HOH A 506 O HOH A 561 2.16 REMARK 500 NH1 ARG B 345 O HOH B 601 2.17 REMARK 500 O PHE A 365 O HOH A 504 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER B 382 O THR A 359 1545 1.92 REMARK 500 O HOH B 605 O HOH A 514 1444 1.92 REMARK 500 O HOH B 664 O HOH A 514 1444 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY B 363 C GLY B 363 O -0.096 REMARK 500 ASN B 391 C ASN B 391 O -0.115 REMARK 500 VAL A 356 C VAL A 356 O -0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 395 20.92 -142.65 REMARK 500 ASN A 384 -2.07 78.32 REMARK 500 GLU A 412 -35.60 -33.23 REMARK 500 LYS A 423 108.35 58.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 421 GLY A 422 149.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 369 -11.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 678 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH B 679 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A 586 DISTANCE = 7.00 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5E11 RELATED DB: PDB REMARK 900 OFF STATE STRUCTURE DETERMINED SIMULTANEOUSLY ON THE SAME CRYSTAL. REMARK 900 RELATED ID: 5E1Y RELATED DB: PDB REMARK 900 RELATED ID: 5E21 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE C-TERMINAL EXTENSION (RESIDUES 425-428) REMARK 999 CONTAINS A PUTATIVE LIGAND MOTIF. DBREF 5E22 B 336 424 UNP Q8N448 LNX2_HUMAN 336 424 DBREF 5E22 A 336 424 UNP Q8N448 LNX2_HUMAN 336 424 SEQADV 5E22 SER B 334 UNP Q8N448 EXPRESSION TAG SEQADV 5E22 MET B 335 UNP Q8N448 EXPRESSION TAG SEQADV 5E22 LEU B 338 UNP Q8N448 PHE 338 ENGINEERED MUTATION SEQADV 5E22 GLU B 425 UNP Q8N448 SEE REMARK 999 SEQADV 5E22 ILE B 426 UNP Q8N448 SEE REMARK 999 SEQADV 5E22 GLU B 427 UNP Q8N448 SEE REMARK 999 SEQADV 5E22 LEU B 428 UNP Q8N448 SEE REMARK 999 SEQADV 5E22 SER A 334 UNP Q8N448 EXPRESSION TAG SEQADV 5E22 MET A 335 UNP Q8N448 EXPRESSION TAG SEQADV 5E22 LEU A 338 UNP Q8N448 PHE 338 ENGINEERED MUTATION SEQADV 5E22 GLU A 425 UNP Q8N448 SEE REMARK 999 SEQADV 5E22 ILE A 426 UNP Q8N448 SEE REMARK 999 SEQADV 5E22 GLU A 427 UNP Q8N448 SEE REMARK 999 SEQADV 5E22 LEU A 428 UNP Q8N448 SEE REMARK 999 SEQRES 1 B 95 SER MET GLU ILE LEU GLN VAL ALA LEU HIS LYS ARG ASP SEQRES 2 B 95 SER GLY GLU GLN LEU GLY ILE LYS LEU VAL ARG ARG THR SEQRES 3 B 95 ASP GLU PRO GLY VAL PHE ILE LEU ASP LEU LEU GLU GLY SEQRES 4 B 95 GLY LEU ALA ALA GLN ASP GLY ARG LEU SER SER ASN ASP SEQRES 5 B 95 ARG VAL LEU ALA ILE ASN GLY HIS ASP LEU LYS TYR GLY SEQRES 6 B 95 THR PRO GLU LEU ALA ALA GLN ILE ILE GLN ALA SER GLY SEQRES 7 B 95 GLU ARG VAL ASN LEU THR ILE ALA ARG PRO GLY LYS PRO SEQRES 8 B 95 GLU ILE GLU LEU SEQRES 1 A 95 SER MET GLU ILE LEU GLN VAL ALA LEU HIS LYS ARG ASP SEQRES 2 A 95 SER GLY GLU GLN LEU GLY ILE LYS LEU VAL ARG ARG THR SEQRES 3 A 95 ASP GLU PRO GLY VAL PHE ILE LEU ASP LEU LEU GLU GLY SEQRES 4 A 95 GLY LEU ALA ALA GLN ASP GLY ARG LEU SER SER ASN ASP SEQRES 5 A 95 ARG VAL LEU ALA ILE ASN GLY HIS ASP LEU LYS TYR GLY SEQRES 6 A 95 THR PRO GLU LEU ALA ALA GLN ILE ILE GLN ALA SER GLY SEQRES 7 A 95 GLU ARG VAL ASN LEU THR ILE ALA ARG PRO GLY LYS PRO SEQRES 8 A 95 GLU ILE GLU LEU HET GOL B 501 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *165(H2 O) HELIX 1 AA1 GLY B 373 GLY B 379 1 7 HELIX 2 AA2 THR B 399 ALA B 409 1 11 HELIX 3 AA3 GLY A 373 GLY A 379 1 7 HELIX 4 AA4 THR A 399 ALA A 409 1 11 SHEET 1 AA110 ILE B 353 VAL B 356 0 SHEET 2 AA110 VAL B 364 LEU B 369 -1 O PHE B 365 N VAL B 356 SHEET 3 AA110 ARG B 386 ILE B 390 -1 O VAL B 387 N VAL B 364 SHEET 4 AA110 ARG B 413 PRO B 421 -1 O THR B 417 N ALA B 389 SHEET 5 AA110 MET B 335 HIS B 343 -1 N LEU B 342 O VAL B 414 SHEET 6 AA110 MET A 335 HIS A 343 -1 O MET A 335 N ILE B 337 SHEET 7 AA110 ARG A 413 PRO A 421 -1 O LEU A 416 N VAL A 340 SHEET 8 AA110 ARG A 386 ILE A 390 -1 N LEU A 388 O THR A 417 SHEET 9 AA110 VAL A 364 LEU A 369 -1 N VAL A 364 O VAL A 387 SHEET 10 AA110 ILE A 353 ARG A 357 -1 N LYS A 354 O LEU A 367 SHEET 1 AA2 8 HIS B 393 ASP B 394 0 SHEET 2 AA2 8 ARG B 386 ILE B 390 -1 N ILE B 390 O HIS B 393 SHEET 3 AA2 8 ARG B 413 PRO B 421 -1 O THR B 417 N ALA B 389 SHEET 4 AA2 8 MET B 335 HIS B 343 -1 N LEU B 342 O VAL B 414 SHEET 5 AA2 8 MET A 335 HIS A 343 -1 O MET A 335 N ILE B 337 SHEET 6 AA2 8 ARG A 413 PRO A 421 -1 O LEU A 416 N VAL A 340 SHEET 7 AA2 8 ARG A 386 ILE A 390 -1 N LEU A 388 O THR A 417 SHEET 8 AA2 8 HIS A 393 ASP A 394 -1 O HIS A 393 N ILE A 390 SITE 1 AC1 2 HOH B 615 HOH B 622 CRYST1 38.146 38.146 39.010 113.31 113.31 62.28 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026215 -0.013778 0.007986 0.00000 SCALE2 0.000000 0.029615 0.007986 0.00000 SCALE3 0.000000 0.000000 0.028910 0.00000