HEADER PENICILLIN-BINDING PROTEIN 01-OCT-15 5E31 TITLE 2.3 ANGSTROM CRYSTAL STRUCTURE OF THE MONOMERIC FORM OF PENICILLIN TITLE 2 BINDING PROTEIN 2 PRIME FROM ENTEROCOCCUS FAECIUM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN BINDING PROTEIN 2 PRIME; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 35-678; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECIUM DO; SOURCE 3 ORGANISM_TAXID: 333849; SOURCE 4 GENE: PBP5, HMPREF0351_11456; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS PENICILLIN BINDING PROTEIN 2 PRIME, PBP2, CSGID, STRUCTURAL GENOMICS, KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, PENICILLIN- KEYWDS 3 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,Z.WAWRZAK,L.SHUVALOVA,I.DUBROVSKA,K.FLORES,E.FILIPPOVA, AUTHOR 2 S.GRIMSHAW,K.KWON,W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 3 15-NOV-23 5E31 1 REMARK REVDAT 2 27-SEP-23 5E31 1 REMARK REVDAT 1 14-OCT-15 5E31 0 JRNL AUTH G.MINASOV,Z.WAWRZAK,L.SHUVALOVA,I.DUBROVSKA,K.FLORES, JRNL AUTH 2 E.FILIPPOVA,S.GRIMSHAW,K.KWON,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 2.3 ANGSTROM CRYSTAL STRUCTURE OF THE MONOMERIC FORM OF JRNL TITL 2 PENICILLIN BINDING PROTEIN 2 PRIME FROM ENTEROCOCCUS JRNL TITL 3 FAECIUM. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 30970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1677 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2217 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4898 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 243 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.47000 REMARK 3 B22 (A**2) : -3.71000 REMARK 3 B33 (A**2) : 5.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.329 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.204 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5022 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4767 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6799 ; 1.517 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11057 ; 0.751 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 652 ; 2.825 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 225 ;33.115 ;26.933 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 866 ;10.362 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ; 8.619 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 765 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5817 ; 0.022 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1030 ; 0.019 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2593 ; 2.616 ; 2.738 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2592 ; 2.617 ; 2.738 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3250 ; 4.153 ; 4.099 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3251 ; 4.153 ; 4.099 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2429 ; 3.013 ; 3.113 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2429 ; 3.012 ; 3.113 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3549 ; 4.822 ; 4.508 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5852 ; 7.351 ;22.200 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5789 ; 7.340 ;22.051 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): 45.5634 -31.9043 -2.9749 REMARK 3 T TENSOR REMARK 3 T11: 0.2746 T22: 0.2830 REMARK 3 T33: 0.0767 T12: -0.0357 REMARK 3 T13: 0.0029 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 4.8406 L22: 3.0382 REMARK 3 L33: 1.2752 L12: -1.9239 REMARK 3 L13: 0.1522 L23: -0.6213 REMARK 3 S TENSOR REMARK 3 S11: -0.1191 S12: -0.1981 S13: 0.5186 REMARK 3 S21: 0.0578 S22: 0.0873 S23: -0.4140 REMARK 3 S31: -0.4069 S32: 0.1261 S33: 0.0318 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 161 A 184 REMARK 3 RESIDUE RANGE : A 306 A 345 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3896 -31.6928 -8.9818 REMARK 3 T TENSOR REMARK 3 T11: 0.2558 T22: 0.2831 REMARK 3 T33: 0.1031 T12: 0.0352 REMARK 3 T13: -0.0172 T23: 0.1187 REMARK 3 L TENSOR REMARK 3 L11: 3.4522 L22: 2.4588 REMARK 3 L33: 2.4825 L12: -2.9021 REMARK 3 L13: 2.7665 L23: -2.3875 REMARK 3 S TENSOR REMARK 3 S11: -0.0772 S12: -0.3726 S13: -0.3775 REMARK 3 S21: 0.1019 S22: 0.2607 S23: 0.2921 REMARK 3 S31: -0.0927 S32: -0.0735 S33: -0.1835 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 185 A 265 REMARK 3 ORIGIN FOR THE GROUP (A): 28.2913 -35.3556 -34.2336 REMARK 3 T TENSOR REMARK 3 T11: 0.0467 T22: 0.0931 REMARK 3 T33: 0.1529 T12: 0.0063 REMARK 3 T13: 0.0093 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 6.5956 L22: 1.1290 REMARK 3 L33: 1.4753 L12: -2.7263 REMARK 3 L13: -2.7181 L23: 1.1029 REMARK 3 S TENSOR REMARK 3 S11: 0.0316 S12: -0.1319 S13: 0.0988 REMARK 3 S21: -0.0038 S22: 0.0534 S23: -0.0419 REMARK 3 S31: -0.0880 S32: 0.1663 S33: -0.0851 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 266 A 305 REMARK 3 RESIDUE RANGE : A 383 A 412 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6058 -15.9933 -24.4758 REMARK 3 T TENSOR REMARK 3 T11: 0.0696 T22: 0.0903 REMARK 3 T33: 0.1301 T12: -0.0078 REMARK 3 T13: -0.0559 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.4906 L22: 3.8131 REMARK 3 L33: 0.6604 L12: -1.8625 REMARK 3 L13: -0.0180 L23: -0.9661 REMARK 3 S TENSOR REMARK 3 S11: -0.0723 S12: -0.1243 S13: 0.2372 REMARK 3 S21: 0.2438 S22: -0.0160 S23: -0.4541 REMARK 3 S31: -0.1010 S32: 0.1104 S33: 0.0883 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 346 A 382 REMARK 3 RESIDUE RANGE : A 413 A 678 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8327 6.8176 -29.2959 REMARK 3 T TENSOR REMARK 3 T11: 0.1446 T22: 0.1873 REMARK 3 T33: 0.0049 T12: 0.0070 REMARK 3 T13: 0.0095 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.6050 L22: 1.6850 REMARK 3 L33: 0.3712 L12: -0.0082 REMARK 3 L13: 0.0354 L23: -0.2649 REMARK 3 S TENSOR REMARK 3 S11: 0.0303 S12: -0.0612 S13: -0.0015 REMARK 3 S21: 0.1075 S22: -0.0113 S23: 0.0882 REMARK 3 S31: -0.0102 S32: -0.0129 S33: -0.0191 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5E31 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33135 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : 0.13100 REMARK 200 FOR THE DATA SET : 22.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.63700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DVY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 13.9 MG/ML, 0.5M SODIUM REMARK 280 CHLORIDE, 0.01M TRIS-HCL (PH 8.3), 5MM PENICILLIN V; SCREEN: REMARK 280 CLASSICS II (H7), 0.15M DL-MALIC ACID (PH 7.0), 20% (W/V) PEG REMARK 280 3350., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.72000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.39300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.17000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.39300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.72000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.17000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 35 REMARK 465 TYR A 36 REMARK 465 GLN A 37 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 178 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 40 49.83 -150.81 REMARK 500 LYS A 75 -120.67 -134.06 REMARK 500 ILE A 90 -62.59 -92.99 REMARK 500 VAL A 154 -64.78 -96.07 REMARK 500 GLU A 157 -6.21 77.35 REMARK 500 PHE A 504 -140.92 -86.34 REMARK 500 PRO A 513 44.76 -80.68 REMARK 500 GLN A 540 -131.16 -113.66 REMARK 500 GLN A 627 -48.01 -141.50 REMARK 500 GLU A 629 -61.21 76.31 REMARK 500 ASP A 658 -107.71 21.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DVY RELATED DB: PDB REMARK 900 5DVY - LOW RESOLUTION DIMERIC FORM OF THE SAME PROTEIN. REMARK 900 RELATED ID: CSGID-06526 RELATED DB: TARGETTRACK DBREF 5E31 A 35 678 UNP Q3XZN6 Q3XZN6_ENTFC 35 678 SEQRES 1 A 644 HIS TYR GLN GLU THR GLN ALA VAL GLU ALA GLY GLU LYS SEQRES 2 A 644 THR VAL GLU GLN PHE VAL GLN ALA LEU ASN LYS GLY ASP SEQRES 3 A 644 TYR ASN LYS ALA ALA GLU MSE THR SER LYS LYS ALA ALA SEQRES 4 A 644 ASN LYS SER ALA LEU SER GLU LYS GLU ILE LEU ASP LYS SEQRES 5 A 644 TYR GLN ASN ILE TYR GLY ALA ALA ASP VAL LYS GLY LEU SEQRES 6 A 644 GLN ILE SER ASN LEU LYS VAL ASP LYS LYS ASP ASP SER SEQRES 7 A 644 THR TYR SER PHE SER TYR LYS ALA LYS MSE ASN THR SER SEQRES 8 A 644 LEU GLY GLU LEU LYS ASP LEU SER TYR LYS GLY THR LEU SEQRES 9 A 644 ASP ARG ASN ASP GLY GLN THR THR ILE ASN TRP GLN PRO SEQRES 10 A 644 ASN LEU VAL PHE PRO GLU MSE GLU GLY ASN ASP LYS VAL SEQRES 11 A 644 SER LEU THR THR GLN GLU ALA ALA ARG GLY ASN ILE ILE SEQRES 12 A 644 ASP ARG ASN GLY GLU PRO LEU ALA THR THR GLY LYS LEU SEQRES 13 A 644 LYS GLN LEU GLY VAL VAL PRO SER LYS LEU GLY ASP GLY SEQRES 14 A 644 GLY GLU LYS THR ALA ASN ILE LYS ALA ILE ALA SER SER SEQRES 15 A 644 PHE ASP LEU THR GLU ASP ALA ILE ASN GLN ALA ILE SER SEQRES 16 A 644 GLN SER TRP VAL GLN PRO ASP TYR PHE VAL PRO LEU LYS SEQRES 17 A 644 ILE ILE ASP GLY ALA THR PRO GLU LEU PRO ALA GLY ALA SEQRES 18 A 644 THR ILE GLN GLU VAL ASP GLY ARG TYR TYR PRO LEU GLY SEQRES 19 A 644 GLU ALA ALA ALA GLN LEU ILE GLY TYR VAL GLY ASP ILE SEQRES 20 A 644 THR ALA GLU ASP ILE ASP LYS ASN PRO GLU LEU SER SER SEQRES 21 A 644 ASN GLY LYS ILE GLY ARG SER GLY LEU GLU MSE ALA PHE SEQRES 22 A 644 ASP LYS ASP LEU ARG GLY THR THR GLY GLY LYS LEU SER SEQRES 23 A 644 ILE THR ASP ALA ASP GLY VAL GLU LYS LYS VAL LEU ILE SEQRES 24 A 644 GLU HIS GLU VAL GLN ASN GLY LYS ASP ILE LYS LEU THR SEQRES 25 A 644 ILE ASP ALA LYS ALA GLN LYS THR ALA PHE ASP SER LEU SEQRES 26 A 644 GLY GLY LYS ALA GLY SER THR VAL ALA THR THR PRO LYS SEQRES 27 A 644 THR GLY ASP LEU LEU ALA LEU ALA SER SER PRO SER TYR SEQRES 28 A 644 ASP PRO ASN LYS MSE THR ASN GLY ILE SER GLN GLU ASP SEQRES 29 A 644 TYR LYS ALA TYR GLU GLU ASN PRO GLU GLN PRO PHE ILE SEQRES 30 A 644 SER ARG PHE ALA THR GLY TYR ALA PRO GLY SER THR PHE SEQRES 31 A 644 LYS MSE ILE THR ALA ALA ILE GLY LEU ASP ASN GLY THR SEQRES 32 A 644 ILE ASP PRO ASN GLU VAL LEU THR ILE ASN GLY LEU LYS SEQRES 33 A 644 TRP GLN LYS ASP SER SER TRP GLY SER TYR GLN VAL THR SEQRES 34 A 644 ARG VAL SER ASP VAL SER GLN VAL ASP LEU LYS THR ALA SEQRES 35 A 644 LEU ILE TYR SER ASP ASN ILE TYR MSE ALA GLN GLU THR SEQRES 36 A 644 LEU LYS MSE GLY GLU LYS LYS PHE ARG THR GLY LEU ASP SEQRES 37 A 644 LYS PHE ILE PHE GLY GLU ASP LEU ASP LEU PRO ILE SER SEQRES 38 A 644 MSE ASN PRO ALA GLN ILE SER ASN GLU ASP SER PHE ASN SEQRES 39 A 644 SER ASP ILE LEU LEU ALA ASP THR GLY TYR GLY GLN GLY SEQRES 40 A 644 GLU LEU LEU ILE ASN PRO ILE GLN GLN ALA ALA MSE TYR SEQRES 41 A 644 SER VAL PHE ALA ASN ASN GLY THR LEU VAL TYR PRO LYS SEQRES 42 A 644 LEU ILE ALA ASP LYS GLU THR LYS ASP LYS LYS ASN VAL SEQRES 43 A 644 ILE GLY GLU THR ALA VAL GLN THR ILE VAL PRO ASP LEU SEQRES 44 A 644 ARG GLU VAL VAL GLN ASP VAL ASN GLY THR ALA HIS SER SEQRES 45 A 644 LEU SER ALA LEU GLY ILE PRO LEU ALA ALA LYS THR GLY SEQRES 46 A 644 THR ALA GLU ILE LYS GLU LYS GLN ASP GLU LYS GLY LYS SEQRES 47 A 644 GLU ASN SER PHE LEU PHE ALA PHE ASN PRO ASP ASN GLN SEQRES 48 A 644 GLY TYR MSE MSE VAL SER MSE LEU GLU ASN LYS GLU ASP SEQRES 49 A 644 ASP ASP SER ALA THR LYS ARG ALA SER GLU LEU LEU GLN SEQRES 50 A 644 TYR LEU ASN GLN ASN TYR GLN MODRES 5E31 MSE A 67 MET MODIFIED RESIDUE MODRES 5E31 MSE A 122 MET MODIFIED RESIDUE MODRES 5E31 MSE A 158 MET MODIFIED RESIDUE MODRES 5E31 MSE A 305 MET MODIFIED RESIDUE MODRES 5E31 MSE A 390 MET MODIFIED RESIDUE MODRES 5E31 MSE A 426 MET MODIFIED RESIDUE MODRES 5E31 MSE A 485 MET MODIFIED RESIDUE MODRES 5E31 MSE A 492 MET MODIFIED RESIDUE MODRES 5E31 MSE A 516 MET MODIFIED RESIDUE MODRES 5E31 MSE A 553 MET MODIFIED RESIDUE MODRES 5E31 MSE A 648 MET MODIFIED RESIDUE MODRES 5E31 MSE A 649 MET MODIFIED RESIDUE MODRES 5E31 MSE A 652 MET MODIFIED RESIDUE HET MSE A 67 8 HET MSE A 122 8 HET MSE A 158 8 HET MSE A 305 8 HET MSE A 390 8 HET MSE A 426 8 HET MSE A 485 8 HET MSE A 492 8 HET MSE A 516 8 HET MSE A 553 8 HET MSE A 648 8 HET MSE A 649 8 HET MSE A 652 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 2 HOH *243(H2 O) HELIX 1 AA1 ALA A 41 LYS A 58 1 18 HELIX 2 AA2 ASP A 60 MSE A 67 1 8 HELIX 3 AA3 SER A 79 TYR A 91 1 13 HELIX 4 AA4 GLN A 150 VAL A 154 5 5 HELIX 5 AA5 PRO A 197 GLY A 201 5 5 HELIX 6 AA6 ASP A 202 PHE A 217 1 16 HELIX 7 AA7 THR A 220 GLN A 230 1 11 HELIX 8 AA8 LEU A 267 ALA A 270 5 4 HELIX 9 AA9 ALA A 271 GLY A 276 1 6 HELIX 10 AB1 THR A 282 ASN A 289 1 8 HELIX 11 AB2 SER A 301 PHE A 307 1 7 HELIX 12 AB3 PHE A 307 GLY A 313 1 7 HELIX 13 AB4 ASP A 348 LEU A 359 1 12 HELIX 14 AB5 ASP A 386 ASN A 392 1 7 HELIX 15 AB6 SER A 395 GLU A 404 1 10 HELIX 16 AB7 SER A 412 THR A 416 5 5 HELIX 17 AB8 GLY A 421 THR A 423 5 3 HELIX 18 AB9 PHE A 424 ASN A 435 1 12 HELIX 19 AC1 ASP A 454 GLY A 458 5 5 HELIX 20 AC2 ASP A 472 SER A 480 1 9 HELIX 21 AC3 ASP A 481 GLY A 493 1 13 HELIX 22 AC4 GLY A 493 LYS A 503 1 11 HELIX 23 AC5 SER A 529 TYR A 538 1 10 HELIX 24 AC6 ASN A 546 SER A 555 1 10 HELIX 25 AC7 VAL A 556 ASN A 559 5 4 HELIX 26 AC8 GLY A 582 ASP A 599 1 18 HELIX 27 AC9 ALA A 604 GLY A 611 5 8 HELIX 28 AD1 SER A 661 ALA A 666 1 6 HELIX 29 AD2 ALA A 666 TYR A 677 1 12 SHEET 1 AA1 3 LYS A 97 LYS A 105 0 SHEET 2 AA1 3 THR A 113 THR A 124 -1 O LYS A 119 N SER A 102 SHEET 3 AA1 3 LYS A 108 ASP A 110 -1 N ASP A 110 O THR A 113 SHEET 1 AA2 4 LYS A 97 LYS A 105 0 SHEET 2 AA2 4 THR A 113 THR A 124 -1 O LYS A 119 N SER A 102 SHEET 3 AA2 4 GLY A 127 ASN A 141 -1 O TYR A 134 N TYR A 118 SHEET 4 AA2 4 GLN A 144 ILE A 147 -1 O GLN A 144 N ASN A 141 SHEET 1 AA3 3 LYS A 163 GLN A 169 0 SHEET 2 AA3 3 GLY A 316 THR A 322 -1 O GLY A 316 N GLN A 169 SHEET 3 AA3 3 GLU A 328 HIS A 335 -1 O LYS A 330 N ILE A 321 SHEET 1 AA4 3 VAL A 239 ILE A 243 0 SHEET 2 AA4 3 PRO A 183 VAL A 195 -1 N LEU A 193 O LYS A 242 SHEET 3 AA4 3 ALA A 255 TYR A 264 -1 O VAL A 260 N LEU A 190 SHEET 1 AA5 4 VAL A 239 ILE A 243 0 SHEET 2 AA5 4 PRO A 183 VAL A 195 -1 N LEU A 193 O LYS A 242 SHEET 3 AA5 4 ILE A 176 ILE A 177 -1 N ILE A 176 O LEU A 184 SHEET 4 AA5 4 ILE A 343 LYS A 344 1 O ILE A 343 N ILE A 177 SHEET 1 AA6 2 VAL A 278 ASP A 280 0 SHEET 2 AA6 2 LYS A 297 GLY A 299 -1 O ILE A 298 N GLY A 279 SHEET 1 AA7 5 LEU A 376 SER A 382 0 SHEET 2 AA7 5 GLY A 364 THR A 369 -1 N THR A 366 O ALA A 380 SHEET 3 AA7 5 MSE A 648 LEU A 653 -1 O MSE A 652 N SER A 365 SHEET 4 AA7 5 LYS A 632 PHE A 640 -1 N ALA A 639 O MSE A 649 SHEET 5 AA7 5 ALA A 615 ILE A 623 -1 N GLY A 619 O PHE A 636 SHEET 1 AA8 2 LEU A 444 THR A 445 0 SHEET 2 AA8 2 GLN A 470 VAL A 471 -1 O VAL A 471 N LEU A 444 SHEET 1 AA9 2 LYS A 450 TRP A 451 0 SHEET 2 AA9 2 VAL A 462 THR A 463 -1 O VAL A 462 N TRP A 451 SHEET 1 AB1 2 LEU A 563 VAL A 564 0 SHEET 2 AB1 2 ASP A 576 LYS A 577 -1 O LYS A 577 N LEU A 563 LINK C GLU A 66 N MSE A 67 1555 1555 1.33 LINK C MSE A 67 N THR A 68 1555 1555 1.33 LINK C LYS A 121 N MSE A 122 1555 1555 1.33 LINK C MSE A 122 N ASN A 123 1555 1555 1.32 LINK C GLU A 157 N MSE A 158 1555 1555 1.33 LINK C MSE A 158 N GLU A 159 1555 1555 1.33 LINK C GLU A 304 N MSE A 305 1555 1555 1.33 LINK C MSE A 305 N ALA A 306 1555 1555 1.33 LINK C LYS A 389 N MSE A 390 1555 1555 1.33 LINK C MSE A 390 N THR A 391 1555 1555 1.32 LINK C LYS A 425 N MSE A 426 1555 1555 1.33 LINK C MSE A 426 N ILE A 427 1555 1555 1.34 LINK C TYR A 484 N MSE A 485 1555 1555 1.34 LINK C MSE A 485 N ALA A 486 1555 1555 1.33 LINK C LYS A 491 N MSE A 492 1555 1555 1.32 LINK C MSE A 492 N GLY A 493 1555 1555 1.32 LINK C SER A 515 N MSE A 516 1555 1555 1.33 LINK C MSE A 516 N ASN A 517 1555 1555 1.34 LINK C ALA A 552 N MSE A 553 1555 1555 1.34 LINK C MSE A 553 N TYR A 554 1555 1555 1.33 LINK C TYR A 647 N MSE A 648 1555 1555 1.33 LINK C MSE A 648 N MSE A 649 1555 1555 1.31 LINK C MSE A 649 N VAL A 650 1555 1555 1.33 LINK C SER A 651 N MSE A 652 1555 1555 1.33 LINK C MSE A 652 N LEU A 653 1555 1555 1.33 CISPEP 1 SER A 382 PRO A 383 0 -2.18 CRYST1 61.440 64.340 182.786 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016276 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005471 0.00000