data_5E36 # _entry.id 5E36 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5E36 pdb_00005e36 10.2210/pdb5e36/pdb WWPDB D_1000214278 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5E36 _pdbx_database_status.recvd_initial_deposition_date 2015-10-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sheng, J.' 1 'Gan, J.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Crystal structure of 2'-propargyl-modified DNA 8mer-duplex ; _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sheng, J.' 1 ? primary 'Gan, J.' 2 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5E36 _cell.details ? _cell.formula_units_Z ? _cell.length_a 32.032 _cell.length_a_esd ? _cell.length_b 55.526 _cell.length_b_esd ? _cell.length_c 75.695 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 24 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5E36 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*(OMU)P*GP*TP*(5JO)P*CP*AP*C)-3') ; 2496.664 3 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 water nat water 18.015 204 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(OMU)(DG)(DT)(5JO)(DC)(DA)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GUGTXCAC _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 OMU n 1 3 DG n 1 4 DT n 1 5 5JO n 1 6 DC n 1 7 DA n 1 8 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.db_code 5E36 _struct_ref.db_name PDB _struct_ref.details ? _struct_ref.entity_id 1 _struct_ref.id 1 _struct_ref.seq_align ? _struct_ref.seq_dif ? _struct_ref.pdbx_db_accession 5E36 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_align_end ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5E36 A 1 ? 8 ? 5E36 1 ? 8 ? 1 8 2 1 5E36 B 1 ? 8 ? 5E36 1 ? 8 ? 1 8 3 1 5E36 C 1 ? 8 ? 5E36 1 ? 8 ? 1 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5JO 'RNA linking' . ;2'-O-prop-2-yn-1-yladenosine 5'-(dihydrogen phosphate) ; "2'-Propargyl-Adenosine" 'C13 H16 N5 O7 P' 385.269 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 OMU 'RNA linking' n ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; ? 'C10 H15 N2 O9 P' 338.208 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5E36 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.34 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.36 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;10% 2-methyl-2,4-pentanediol (MPD), 40 mMsodiumcacodylate(pH 7.0), 12 mMspermine tetra-HCl, 40 mMLiCl, 80 mMstrontium chloride and 20 mM magnesium chloride. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-09-15 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Double crystal, Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.2.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5E36 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.6 _reflns.d_resolution_low 30 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9231 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.7 _reflns.pdbx_Rmerge_I_obs 0.072 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 30.94 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.66 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 6.96 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 96.9 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.222 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -3.27 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 5.71 _refine.aniso_B[2][3] -0.00 _refine.aniso_B[3][3] -2.44 _refine.B_iso_max ? _refine.B_iso_mean 10.874 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.973 _refine.correlation_coeff_Fo_to_Fc_free 0.967 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5E36 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.60 _refine.ls_d_res_low 27.76 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8752 _refine.ls_number_reflns_R_free 457 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.61 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.13835 _refine.ls_R_factor_R_free 0.16118 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.13720 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1Z7I _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.016 _refine.pdbx_overall_ESU_R_Free 0.016 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.398 _refine.overall_SU_ML 0.048 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 498 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 204 _refine_hist.number_atoms_total 704 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 27.76 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 0.012 555 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 267 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.650 1.393 846 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 2.605 3.000 630 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.457 0.200 81 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 0.020 279 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 114 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.594 _refine_ls_shell.d_res_low 1.635 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 30 _refine_ls_shell.number_reflns_R_work 582 _refine_ls_shell.percent_reflns_obs 91.34 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.156 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.158 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5E36 _struct.title ;Crystal structure of 2'-propargyl-modified DNA 8mer-duplex ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5E36 _struct_keywords.text ;Modified DNA, 2'-propargyl, DNA ; _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A OMU 2 P ? ? A DG 1 A OMU 2 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale2 covale both ? A OMU 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A OMU 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale3 covale both ? A DT 4 "O3'" ? ? ? 1_555 A 5JO 5 P ? ? A DT 4 A 5JO 5 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale4 covale one ? A 5JO 5 "O3'" ? ? ? 1_555 A DC 6 P ? ? A 5JO 5 A DC 6 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale5 covale both ? B DG 1 "O3'" ? ? ? 1_555 B OMU 2 P ? ? B DG 1 B OMU 2 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale6 covale both ? B OMU 2 "O3'" ? ? ? 1_555 B DG 3 P ? ? B OMU 2 B DG 3 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale7 covale both ? B DT 4 "O3'" ? ? ? 1_555 B 5JO 5 P ? ? B DT 4 B 5JO 5 1_555 ? ? ? ? ? ? ? 1.594 ? ? covale8 covale one ? B 5JO 5 "O3'" ? ? ? 1_555 B DC 6 P ? ? B 5JO 5 B DC 6 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale9 covale both ? C DG 1 "O3'" ? ? ? 1_555 C OMU 2 P ? ? C DG 1 C OMU 2 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale10 covale both ? C OMU 2 "O3'" ? ? ? 1_555 C DG 3 P ? ? C OMU 2 C DG 3 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale11 covale both ? C DT 4 "O3'" ? ? ? 1_555 C 5JO 5 P ? ? C DT 4 C 5JO 5 1_555 ? ? ? ? ? ? ? 1.593 ? ? covale12 covale one ? C 5JO 5 "O3'" ? ? ? 1_555 C DC 6 P ? ? C 5JO 5 C DC 6 1_555 ? ? ? ? ? ? ? 1.597 ? ? metalc1 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 101 A HOH 225 1_555 ? ? ? ? ? ? ? 2.212 ? ? metalc2 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 101 A HOH 233 1_555 ? ? ? ? ? ? ? 2.326 ? ? metalc3 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 101 A HOH 264 1_555 ? ? ? ? ? ? ? 2.058 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 101 B HOH 221 1_555 ? ? ? ? ? ? ? 2.350 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 101 B HOH 257 1_555 ? ? ? ? ? ? ? 2.047 ? ? metalc6 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 101 B HOH 241 1_555 ? ? ? ? ? ? ? 2.505 ? ? metalc7 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 101 B HOH 241 3_554 ? ? ? ? ? ? ? 2.505 ? ? metalc8 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 C HOH 124 1_555 ? ? ? ? ? ? ? 2.430 ? ? metalc9 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 C HOH 124 3_554 ? ? ? ? ? ? ? 2.430 ? ? metalc10 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 C HOH 132 1_555 ? ? ? ? ? ? ? 2.166 ? ? metalc11 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 C HOH 132 3_554 ? ? ? ? ? ? ? 2.166 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 1 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 1 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 1 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A OMU 2 N3 ? ? ? 1_555 B DA 7 N1 ? ? A OMU 2 B DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A OMU 2 O4 ? ? ? 1_555 B DA 7 N6 ? ? A OMU 2 B DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 3 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 3 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 3 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 6 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 6 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 6 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B OMU 2 N3 ? ? A DA 7 B OMU 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B OMU 2 O4 ? ? A DA 7 B OMU 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 8 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 8 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 8 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DG 1 N1 ? ? ? 1_555 C DC 8 N3 ? ? C DG 1 C DC 8 3_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DG 1 N2 ? ? ? 1_555 C DC 8 O2 ? ? C DG 1 C DC 8 3_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DG 1 O6 ? ? ? 1_555 C DC 8 N4 ? ? C DG 1 C DC 8 3_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C OMU 2 N3 ? ? ? 1_555 C DA 7 N1 ? ? C OMU 2 C DA 7 3_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C OMU 2 O4 ? ? ? 1_555 C DA 7 N6 ? ? C OMU 2 C DA 7 3_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DG 3 N1 ? ? ? 1_555 C DC 6 N3 ? ? C DG 3 C DC 6 3_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DG 3 N2 ? ? ? 1_555 C DC 6 O2 ? ? C DG 3 C DC 6 3_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DG 3 O6 ? ? ? 1_555 C DC 6 N4 ? ? C DG 3 C DC 6 3_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DC 6 N3 ? ? ? 1_555 C DG 3 N1 ? ? C DC 6 C DG 3 3_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DC 6 N4 ? ? ? 1_555 C DG 3 O6 ? ? C DC 6 C DG 3 3_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DC 6 O2 ? ? ? 1_555 C DG 3 N2 ? ? C DC 6 C DG 3 3_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DA 7 N1 ? ? ? 1_555 C OMU 2 N3 ? ? C DA 7 C OMU 2 3_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DA 7 N6 ? ? ? 1_555 C OMU 2 O4 ? ? C DA 7 C OMU 2 3_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DC 8 N3 ? ? ? 1_555 C DG 1 N1 ? ? C DC 8 C DG 1 3_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DC 8 N4 ? ? ? 1_555 C DG 1 O6 ? ? C DC 8 C DG 1 3_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DC 8 O2 ? ? ? 1_555 C DG 1 N2 ? ? C DC 8 C DG 1 3_554 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 101 ? 7 'binding site for residue MG A 101' AC2 Software B MG 101 ? 6 'binding site for residue MG B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH F . ? HOH A 207 . ? 1_555 ? 2 AC1 7 HOH F . ? HOH A 225 . ? 1_555 ? 3 AC1 7 HOH F . ? HOH A 233 . ? 1_555 ? 4 AC1 7 HOH F . ? HOH A 264 . ? 1_555 ? 5 AC1 7 HOH G . ? HOH B 221 . ? 1_555 ? 6 AC1 7 HOH G . ? HOH B 257 . ? 1_555 ? 7 AC1 7 HOH G . ? HOH B 268 . ? 1_555 ? 8 AC2 6 HOH G . ? HOH B 241 . ? 1_555 ? 9 AC2 6 HOH G . ? HOH B 241 . ? 3_554 ? 10 AC2 6 HOH H . ? HOH C 124 . ? 3_554 ? 11 AC2 6 HOH H . ? HOH C 124 . ? 1_555 ? 12 AC2 6 HOH H . ? HOH C 132 . ? 3_554 ? 13 AC2 6 HOH H . ? HOH C 132 . ? 1_555 ? # _atom_sites.entry_id 5E36 _atom_sites.fract_transf_matrix[1][1] 0.031219 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018010 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013211 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 OMU 2 2 2 OMU U2M A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 5JO 5 5 5 5JO A2P A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 DC 8 8 8 DC DC A . n B 1 1 DG 1 1 1 DG DG B . n B 1 2 OMU 2 2 2 OMU U2M B . n B 1 3 DG 3 3 3 DG DG B . n B 1 4 DT 4 4 4 DT DT B . n B 1 5 5JO 5 5 5 5JO A2P B . n B 1 6 DC 6 6 6 DC DC B . n B 1 7 DA 7 7 7 DA DA B . n B 1 8 DC 8 8 8 DC DC B . n C 1 1 DG 1 1 1 DG DG C . n C 1 2 OMU 2 2 2 OMU U2M C . n C 1 3 DG 3 3 3 DG DG C . n C 1 4 DT 4 4 4 DT DT C . n C 1 5 5JO 5 5 5 5JO A2P C . n C 1 6 DC 6 6 6 DC DC C . n C 1 7 DA 7 7 7 DA DA C . n C 1 8 DC 8 8 8 DC DC C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MG 1 101 1 MG MG A . E 2 MG 1 101 1 MG MG B . F 3 HOH 1 201 147 HOH HOH A . F 3 HOH 2 202 100 HOH HOH A . F 3 HOH 3 203 55 HOH HOH A . F 3 HOH 4 204 54 HOH HOH A . F 3 HOH 5 205 161 HOH HOH A . F 3 HOH 6 206 142 HOH HOH A . F 3 HOH 7 207 30 HOH HOH A . F 3 HOH 8 208 4 HOH HOH A . F 3 HOH 9 209 64 HOH HOH A . F 3 HOH 10 210 29 HOH HOH A . F 3 HOH 11 211 57 HOH HOH A . F 3 HOH 12 212 114 HOH HOH A . F 3 HOH 13 213 25 HOH HOH A . F 3 HOH 14 214 13 HOH HOH A . F 3 HOH 15 215 91 HOH HOH A . F 3 HOH 16 216 43 HOH HOH A . F 3 HOH 17 217 11 HOH HOH A . F 3 HOH 18 218 31 HOH HOH A . F 3 HOH 19 219 15 HOH HOH A . F 3 HOH 20 220 108 HOH HOH A . F 3 HOH 21 221 134 HOH HOH A . F 3 HOH 22 222 96 HOH HOH A . F 3 HOH 23 223 9 HOH HOH A . F 3 HOH 24 224 83 HOH HOH A . F 3 HOH 25 225 2 HOH HOH A . F 3 HOH 26 226 21 HOH HOH A . F 3 HOH 27 227 81 HOH HOH A . F 3 HOH 28 228 137 HOH HOH A . F 3 HOH 29 229 10 HOH HOH A . F 3 HOH 30 230 36 HOH HOH A . F 3 HOH 31 231 123 HOH HOH A . F 3 HOH 32 232 32 HOH HOH A . F 3 HOH 33 233 76 HOH HOH A . F 3 HOH 34 234 68 HOH HOH A . F 3 HOH 35 235 127 HOH HOH A . F 3 HOH 36 236 62 HOH HOH A . F 3 HOH 37 237 71 HOH HOH A . F 3 HOH 38 238 98 HOH HOH A . F 3 HOH 39 239 138 HOH HOH A . F 3 HOH 40 240 60 HOH HOH A . F 3 HOH 41 241 128 HOH HOH A . F 3 HOH 42 242 154 HOH HOH A . F 3 HOH 43 243 193 HOH HOH A . F 3 HOH 44 244 156 HOH HOH A . F 3 HOH 45 245 143 HOH HOH A . F 3 HOH 46 246 86 HOH HOH A . F 3 HOH 47 247 105 HOH HOH A . F 3 HOH 48 248 59 HOH HOH A . F 3 HOH 49 249 153 HOH HOH A . F 3 HOH 50 250 141 HOH HOH A . F 3 HOH 51 251 167 HOH HOH A . F 3 HOH 52 252 144 HOH HOH A . F 3 HOH 53 253 162 HOH HOH A . F 3 HOH 54 254 44 HOH HOH A . F 3 HOH 55 255 182 HOH HOH A . F 3 HOH 56 256 192 HOH HOH A . F 3 HOH 57 257 102 HOH HOH A . F 3 HOH 58 258 158 HOH HOH A . F 3 HOH 59 259 155 HOH HOH A . F 3 HOH 60 260 85 HOH HOH A . F 3 HOH 61 261 201 HOH HOH A . F 3 HOH 62 262 87 HOH HOH A . F 3 HOH 63 263 191 HOH HOH A . F 3 HOH 64 264 104 HOH HOH A . F 3 HOH 65 265 79 HOH HOH A . G 3 HOH 1 201 152 HOH HOH B . G 3 HOH 2 202 73 HOH HOH B . G 3 HOH 3 203 164 HOH HOH B . G 3 HOH 4 204 41 HOH HOH B . G 3 HOH 5 205 51 HOH HOH B . G 3 HOH 6 206 118 HOH HOH B . G 3 HOH 7 207 77 HOH HOH B . G 3 HOH 8 208 50 HOH HOH B . G 3 HOH 9 209 66 HOH HOH B . G 3 HOH 10 210 78 HOH HOH B . G 3 HOH 11 211 70 HOH HOH B . G 3 HOH 12 212 53 HOH HOH B . G 3 HOH 13 213 92 HOH HOH B . G 3 HOH 14 214 82 HOH HOH B . G 3 HOH 15 215 24 HOH HOH B . G 3 HOH 16 216 14 HOH HOH B . G 3 HOH 17 217 198 HOH HOH B . G 3 HOH 18 218 49 HOH HOH B . G 3 HOH 19 219 33 HOH HOH B . G 3 HOH 20 220 6 HOH HOH B . G 3 HOH 21 221 27 HOH HOH B . G 3 HOH 22 222 179 HOH HOH B . G 3 HOH 23 223 1 HOH HOH B . G 3 HOH 24 224 52 HOH HOH B . G 3 HOH 25 225 26 HOH HOH B . G 3 HOH 26 226 18 HOH HOH B . G 3 HOH 27 227 12 HOH HOH B . G 3 HOH 28 228 94 HOH HOH B . G 3 HOH 29 229 65 HOH HOH B . G 3 HOH 30 230 163 HOH HOH B . G 3 HOH 31 231 90 HOH HOH B . G 3 HOH 32 232 199 HOH HOH B . G 3 HOH 33 233 180 HOH HOH B . G 3 HOH 34 234 38 HOH HOH B . G 3 HOH 35 235 140 HOH HOH B . G 3 HOH 36 236 72 HOH HOH B . G 3 HOH 37 237 139 HOH HOH B . G 3 HOH 38 238 16 HOH HOH B . G 3 HOH 39 239 116 HOH HOH B . G 3 HOH 40 240 61 HOH HOH B . G 3 HOH 41 241 34 HOH HOH B . G 3 HOH 42 242 130 HOH HOH B . G 3 HOH 43 243 111 HOH HOH B . G 3 HOH 44 244 185 HOH HOH B . G 3 HOH 45 245 159 HOH HOH B . G 3 HOH 46 246 197 HOH HOH B . G 3 HOH 47 247 67 HOH HOH B . G 3 HOH 48 248 37 HOH HOH B . G 3 HOH 49 249 203 HOH HOH B . G 3 HOH 50 250 107 HOH HOH B . G 3 HOH 51 251 149 HOH HOH B . G 3 HOH 52 252 101 HOH HOH B . G 3 HOH 53 253 146 HOH HOH B . G 3 HOH 54 254 88 HOH HOH B . G 3 HOH 55 255 157 HOH HOH B . G 3 HOH 56 256 160 HOH HOH B . G 3 HOH 57 257 151 HOH HOH B . G 3 HOH 58 258 204 HOH HOH B . G 3 HOH 59 259 183 HOH HOH B . G 3 HOH 60 260 148 HOH HOH B . G 3 HOH 61 261 166 HOH HOH B . G 3 HOH 62 262 89 HOH HOH B . G 3 HOH 63 263 46 HOH HOH B . G 3 HOH 64 264 93 HOH HOH B . G 3 HOH 65 265 195 HOH HOH B . G 3 HOH 66 266 190 HOH HOH B . G 3 HOH 67 267 109 HOH HOH B . G 3 HOH 68 268 145 HOH HOH B . H 3 HOH 1 101 171 HOH HOH C . H 3 HOH 2 102 74 HOH HOH C . H 3 HOH 3 103 196 HOH HOH C . H 3 HOH 4 104 200 HOH HOH C . H 3 HOH 5 105 135 HOH HOH C . H 3 HOH 6 106 28 HOH HOH C . H 3 HOH 7 107 121 HOH HOH C . H 3 HOH 8 108 58 HOH HOH C . H 3 HOH 9 109 181 HOH HOH C . H 3 HOH 10 110 136 HOH HOH C . H 3 HOH 11 111 124 HOH HOH C . H 3 HOH 12 112 35 HOH HOH C . H 3 HOH 13 113 42 HOH HOH C . H 3 HOH 14 114 47 HOH HOH C . H 3 HOH 15 115 80 HOH HOH C . H 3 HOH 16 116 120 HOH HOH C . H 3 HOH 17 117 19 HOH HOH C . H 3 HOH 18 118 95 HOH HOH C . H 3 HOH 19 119 113 HOH HOH C . H 3 HOH 20 120 8 HOH HOH C . H 3 HOH 21 121 131 HOH HOH C . H 3 HOH 22 122 7 HOH HOH C . H 3 HOH 23 123 75 HOH HOH C . H 3 HOH 24 124 23 HOH HOH C . H 3 HOH 25 125 69 HOH HOH C . H 3 HOH 26 126 39 HOH HOH C . H 3 HOH 27 127 56 HOH HOH C . H 3 HOH 28 128 20 HOH HOH C . H 3 HOH 29 129 117 HOH HOH C . H 3 HOH 30 130 115 HOH HOH C . H 3 HOH 31 131 5 HOH HOH C . H 3 HOH 32 132 22 HOH HOH C . H 3 HOH 33 133 17 HOH HOH C . H 3 HOH 34 134 129 HOH HOH C . H 3 HOH 35 135 174 HOH HOH C . H 3 HOH 36 136 103 HOH HOH C . H 3 HOH 37 137 48 HOH HOH C . H 3 HOH 38 138 3 HOH HOH C . H 3 HOH 39 139 97 HOH HOH C . H 3 HOH 40 140 126 HOH HOH C . H 3 HOH 41 141 122 HOH HOH C . H 3 HOH 42 142 99 HOH HOH C . H 3 HOH 43 143 40 HOH HOH C . H 3 HOH 44 144 112 HOH HOH C . H 3 HOH 45 145 63 HOH HOH C . H 3 HOH 46 146 187 HOH HOH C . H 3 HOH 47 147 125 HOH HOH C . H 3 HOH 48 148 133 HOH HOH C . H 3 HOH 49 149 84 HOH HOH C . H 3 HOH 50 150 150 HOH HOH C . H 3 HOH 51 151 176 HOH HOH C . H 3 HOH 52 152 119 HOH HOH C . H 3 HOH 53 153 186 HOH HOH C . H 3 HOH 54 154 168 HOH HOH C . H 3 HOH 55 155 132 HOH HOH C . H 3 HOH 56 156 170 HOH HOH C . H 3 HOH 57 157 188 HOH HOH C . H 3 HOH 58 158 194 HOH HOH C . H 3 HOH 59 159 165 HOH HOH C . H 3 HOH 60 160 189 HOH HOH C . H 3 HOH 61 161 169 HOH HOH C . H 3 HOH 62 162 110 HOH HOH C . H 3 HOH 63 163 45 HOH HOH C . H 3 HOH 64 164 175 HOH HOH C . H 3 HOH 65 165 177 HOH HOH C . H 3 HOH 66 166 106 HOH HOH C . H 3 HOH 67 167 178 HOH HOH C . H 3 HOH 68 168 184 HOH HOH C . H 3 HOH 69 169 172 HOH HOH C . H 3 HOH 70 170 173 HOH HOH C . H 3 HOH 71 171 202 HOH HOH C . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,D,E,F,G 2 1,2 C,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 740 ? 1 MORE -4 ? 1 'SSA (A^2)' 3220 ? 2 'ABSA (A^2)' 740 ? 2 MORE -4 ? 2 'SSA (A^2)' 3200 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -37.8475000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B MG 101 ? E MG . 2 1 B HOH 241 ? G HOH . 3 1 C HOH 144 ? H HOH . 4 1 C HOH 167 ? H HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? F HOH . ? A HOH 225 ? 1_555 MG ? D MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 233 ? 1_555 87.8 ? 2 O ? F HOH . ? A HOH 225 ? 1_555 MG ? D MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 264 ? 1_555 92.4 ? 3 O ? F HOH . ? A HOH 233 ? 1_555 MG ? D MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 264 ? 1_555 130.3 ? 4 O ? F HOH . ? A HOH 225 ? 1_555 MG ? D MG . ? A MG 101 ? 1_555 O ? G HOH . ? B HOH 221 ? 1_555 144.1 ? 5 O ? F HOH . ? A HOH 233 ? 1_555 MG ? D MG . ? A MG 101 ? 1_555 O ? G HOH . ? B HOH 221 ? 1_555 63.2 ? 6 O ? F HOH . ? A HOH 264 ? 1_555 MG ? D MG . ? A MG 101 ? 1_555 O ? G HOH . ? B HOH 221 ? 1_555 91.3 ? 7 O ? F HOH . ? A HOH 225 ? 1_555 MG ? D MG . ? A MG 101 ? 1_555 O ? G HOH . ? B HOH 257 ? 1_555 155.8 ? 8 O ? F HOH . ? A HOH 233 ? 1_555 MG ? D MG . ? A MG 101 ? 1_555 O ? G HOH . ? B HOH 257 ? 1_555 113.6 ? 9 O ? F HOH . ? A HOH 264 ? 1_555 MG ? D MG . ? A MG 101 ? 1_555 O ? G HOH . ? B HOH 257 ? 1_555 65.5 ? 10 O ? G HOH . ? B HOH 221 ? 1_555 MG ? D MG . ? A MG 101 ? 1_555 O ? G HOH . ? B HOH 257 ? 1_555 51.4 ? 11 O ? G HOH . ? B HOH 241 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? G HOH . ? B HOH 241 ? 3_554 0.0 ? 12 O ? G HOH . ? B HOH 241 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? C HOH 124 ? 1_555 89.3 ? 13 O ? G HOH . ? B HOH 241 ? 3_554 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? C HOH 124 ? 1_555 89.3 ? 14 O ? G HOH . ? B HOH 241 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? C HOH 124 ? 3_554 89.3 ? 15 O ? G HOH . ? B HOH 241 ? 3_554 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? C HOH 124 ? 3_554 89.3 ? 16 O ? H HOH . ? C HOH 124 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? C HOH 124 ? 3_554 178.6 ? 17 O ? G HOH . ? B HOH 241 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? C HOH 132 ? 1_555 111.4 ? 18 O ? G HOH . ? B HOH 241 ? 3_554 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? C HOH 132 ? 1_555 111.4 ? 19 O ? H HOH . ? C HOH 124 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? C HOH 132 ? 1_555 91.6 ? 20 O ? H HOH . ? C HOH 124 ? 3_554 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? C HOH 132 ? 1_555 88.9 ? 21 O ? G HOH . ? B HOH 241 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? C HOH 132 ? 3_554 111.4 ? 22 O ? G HOH . ? B HOH 241 ? 3_554 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? C HOH 132 ? 3_554 111.4 ? 23 O ? H HOH . ? C HOH 124 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? C HOH 132 ? 3_554 88.9 ? 24 O ? H HOH . ? C HOH 124 ? 3_554 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? C HOH 132 ? 3_554 91.6 ? 25 O ? H HOH . ? C HOH 132 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? C HOH 132 ? 3_554 137.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-12-02 2 'Structure model' 1 1 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Database references' 4 2 'Structure model' 'Derived calculations' 5 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' pdbx_prerelease_seq 6 2 'Structure model' pdbx_struct_conn_angle 7 2 'Structure model' pdbx_struct_oper_list 8 2 'Structure model' pdbx_validate_polymer_linkage 9 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 11 2 'Structure model' '_pdbx_struct_conn_angle.value' 12 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 13 2 'Structure model' '_struct_conn.pdbx_dist_value' 14 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 15 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 16 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 17 2 'Structure model' '_struct_conn.ptnr2_symmetry' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.7.0029 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 MG A MG 101 ? ? O A HOH 207 ? ? 1.58 2 1 O B HOH 221 ? ? O B HOH 257 ? ? 1.93 3 1 O B HOH 202 ? ? O B HOH 257 ? ? 1.99 4 1 O C HOH 112 ? ? O C HOH 161 ? ? 2.02 5 1 O B HOH 223 ? ? O B HOH 257 ? ? 2.04 6 1 O C HOH 102 ? ? O C HOH 161 ? ? 2.18 7 1 O C HOH 138 ? ? O C HOH 161 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 C _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 161 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 C _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 161 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_554 _pdbx_validate_symm_contact.dist 2.13 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C4'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 1 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 1 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 117.19 _pdbx_validate_rmsd_angle.angle_target_value 109.80 _pdbx_validate_rmsd_angle.angle_deviation 7.39 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 "C3'" A 5JO 5 ? ? P A DC 6 ? ? 2.64 2 1 "C3'" B 5JO 5 ? ? P B DC 6 ? ? 2.63 3 1 "C3'" C 5JO 5 ? ? P C DC 6 ? ? 2.62 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5JO "O5'" O N N 1 5JO "C5'" C N N 2 5JO "C4'" C N R 3 5JO "O4'" O N N 4 5JO "C3'" C N R 5 5JO "O3'" O N N 6 5JO "C2'" C N R 7 5JO "O2'" O N N 8 5JO "C1'" C N R 9 5JO N9 N Y N 10 5JO C8 C Y N 11 5JO N7 N Y N 12 5JO C5 C Y N 13 5JO C6 C Y N 14 5JO N6 N N N 15 5JO N1 N Y N 16 5JO C2 C Y N 17 5JO N3 N Y N 18 5JO C4 C Y N 19 5JO P P N N 20 5JO OP1 O N N 21 5JO OP2 O N N 22 5JO "C6'" C N N 23 5JO "C7'" C N N 24 5JO "C8'" C N N 25 5JO H1 H N N 26 5JO H2 H N N 27 5JO H3 H N N 28 5JO H4 H N N 29 5JO H5 H N N 30 5JO H6 H N N 31 5JO H7 H N N 32 5JO H8 H N N 33 5JO H9 H N N 34 5JO H10 H N N 35 5JO H11 H N N 36 5JO H13 H N N 37 5JO H14 H N N 38 5JO H15 H N N 39 5JO H16 H N N 40 5JO OP3 O N N 41 5JO H12 H N N 42 DA OP3 O N N 43 DA P P N N 44 DA OP1 O N N 45 DA OP2 O N N 46 DA "O5'" O N N 47 DA "C5'" C N N 48 DA "C4'" C N R 49 DA "O4'" O N N 50 DA "C3'" C N S 51 DA "O3'" O N N 52 DA "C2'" C N N 53 DA "C1'" C N R 54 DA N9 N Y N 55 DA C8 C Y N 56 DA N7 N Y N 57 DA C5 C Y N 58 DA C6 C Y N 59 DA N6 N N N 60 DA N1 N Y N 61 DA C2 C Y N 62 DA N3 N Y N 63 DA C4 C Y N 64 DA HOP3 H N N 65 DA HOP2 H N N 66 DA "H5'" H N N 67 DA "H5''" H N N 68 DA "H4'" H N N 69 DA "H3'" H N N 70 DA "HO3'" H N N 71 DA "H2'" H N N 72 DA "H2''" H N N 73 DA "H1'" H N N 74 DA H8 H N N 75 DA H61 H N N 76 DA H62 H N N 77 DA H2 H N N 78 DC OP3 O N N 79 DC P P N N 80 DC OP1 O N N 81 DC OP2 O N N 82 DC "O5'" O N N 83 DC "C5'" C N N 84 DC "C4'" C N R 85 DC "O4'" O N N 86 DC "C3'" C N S 87 DC "O3'" O N N 88 DC "C2'" C N N 89 DC "C1'" C N R 90 DC N1 N N N 91 DC C2 C N N 92 DC O2 O N N 93 DC N3 N N N 94 DC C4 C N N 95 DC N4 N N N 96 DC C5 C N N 97 DC C6 C N N 98 DC HOP3 H N N 99 DC HOP2 H N N 100 DC "H5'" H N N 101 DC "H5''" H N N 102 DC "H4'" H N N 103 DC "H3'" H N N 104 DC "HO3'" H N N 105 DC "H2'" H N N 106 DC "H2''" H N N 107 DC "H1'" H N N 108 DC H41 H N N 109 DC H42 H N N 110 DC H5 H N N 111 DC H6 H N N 112 DG OP3 O N N 113 DG P P N N 114 DG OP1 O N N 115 DG OP2 O N N 116 DG "O5'" O N N 117 DG "C5'" C N N 118 DG "C4'" C N R 119 DG "O4'" O N N 120 DG "C3'" C N S 121 DG "O3'" O N N 122 DG "C2'" C N N 123 DG "C1'" C N R 124 DG N9 N Y N 125 DG C8 C Y N 126 DG N7 N Y N 127 DG C5 C Y N 128 DG C6 C N N 129 DG O6 O N N 130 DG N1 N N N 131 DG C2 C N N 132 DG N2 N N N 133 DG N3 N N N 134 DG C4 C Y N 135 DG HOP3 H N N 136 DG HOP2 H N N 137 DG "H5'" H N N 138 DG "H5''" H N N 139 DG "H4'" H N N 140 DG "H3'" H N N 141 DG "HO3'" H N N 142 DG "H2'" H N N 143 DG "H2''" H N N 144 DG "H1'" H N N 145 DG H8 H N N 146 DG H1 H N N 147 DG H21 H N N 148 DG H22 H N N 149 DT OP3 O N N 150 DT P P N N 151 DT OP1 O N N 152 DT OP2 O N N 153 DT "O5'" O N N 154 DT "C5'" C N N 155 DT "C4'" C N R 156 DT "O4'" O N N 157 DT "C3'" C N S 158 DT "O3'" O N N 159 DT "C2'" C N N 160 DT "C1'" C N R 161 DT N1 N N N 162 DT C2 C N N 163 DT O2 O N N 164 DT N3 N N N 165 DT C4 C N N 166 DT O4 O N N 167 DT C5 C N N 168 DT C7 C N N 169 DT C6 C N N 170 DT HOP3 H N N 171 DT HOP2 H N N 172 DT "H5'" H N N 173 DT "H5''" H N N 174 DT "H4'" H N N 175 DT "H3'" H N N 176 DT "HO3'" H N N 177 DT "H2'" H N N 178 DT "H2''" H N N 179 DT "H1'" H N N 180 DT H3 H N N 181 DT H71 H N N 182 DT H72 H N N 183 DT H73 H N N 184 DT H6 H N N 185 HOH O O N N 186 HOH H1 H N N 187 HOH H2 H N N 188 MG MG MG N N 189 OMU N1 N N N 190 OMU C2 C N N 191 OMU N3 N N N 192 OMU C4 C N N 193 OMU C5 C N N 194 OMU C6 C N N 195 OMU O2 O N N 196 OMU O4 O N N 197 OMU "C1'" C N R 198 OMU "C2'" C N R 199 OMU "O2'" O N N 200 OMU CM2 C N N 201 OMU "C3'" C N R 202 OMU "C4'" C N R 203 OMU "O3'" O N N 204 OMU "O4'" O N N 205 OMU "C5'" C N N 206 OMU "O5'" O N N 207 OMU P P N N 208 OMU OP1 O N N 209 OMU OP2 O N N 210 OMU OP3 O N N 211 OMU HN3 H N N 212 OMU H5 H N N 213 OMU H6 H N N 214 OMU "H1'" H N N 215 OMU "H2'" H N N 216 OMU HM21 H N N 217 OMU HM22 H N N 218 OMU HM23 H N N 219 OMU "H3'" H N N 220 OMU "H4'" H N N 221 OMU "HO3'" H N N 222 OMU "H5'" H N N 223 OMU "H5''" H N N 224 OMU HOP2 H N N 225 OMU HOP3 H N N 226 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5JO OP1 P doub N N 1 5JO P OP2 sing N N 2 5JO P "O5'" sing N N 3 5JO "C5'" "O5'" sing N N 4 5JO "C5'" "C4'" sing N N 5 5JO "O4'" "C4'" sing N N 6 5JO "O4'" "C1'" sing N N 7 5JO "C4'" "C3'" sing N N 8 5JO C8 N7 doub Y N 9 5JO C8 N9 sing Y N 10 5JO "C1'" N9 sing N N 11 5JO "C1'" "C2'" sing N N 12 5JO N7 C5 sing Y N 13 5JO N9 C4 sing Y N 14 5JO "C3'" "O3'" sing N N 15 5JO "C3'" "C2'" sing N N 16 5JO C5 C4 doub Y N 17 5JO C5 C6 sing Y N 18 5JO C4 N3 sing Y N 19 5JO "C2'" "O2'" sing N N 20 5JO "O2'" "C6'" sing N N 21 5JO C6 N6 sing N N 22 5JO C6 N1 doub Y N 23 5JO N3 C2 doub Y N 24 5JO "C6'" "C7'" sing N N 25 5JO C2 N1 sing Y N 26 5JO "C7'" "C8'" trip N N 27 5JO "C5'" H1 sing N N 28 5JO "C5'" H2 sing N N 29 5JO "C4'" H3 sing N N 30 5JO "C3'" H4 sing N N 31 5JO "O3'" H5 sing N N 32 5JO "C2'" H6 sing N N 33 5JO "C1'" H7 sing N N 34 5JO C8 H8 sing N N 35 5JO N6 H9 sing N N 36 5JO N6 H10 sing N N 37 5JO C2 H11 sing N N 38 5JO OP2 H13 sing N N 39 5JO "C6'" H14 sing N N 40 5JO "C6'" H15 sing N N 41 5JO "C8'" H16 sing N N 42 5JO P OP3 sing N N 43 5JO OP3 H12 sing N N 44 DA OP3 P sing N N 45 DA OP3 HOP3 sing N N 46 DA P OP1 doub N N 47 DA P OP2 sing N N 48 DA P "O5'" sing N N 49 DA OP2 HOP2 sing N N 50 DA "O5'" "C5'" sing N N 51 DA "C5'" "C4'" sing N N 52 DA "C5'" "H5'" sing N N 53 DA "C5'" "H5''" sing N N 54 DA "C4'" "O4'" sing N N 55 DA "C4'" "C3'" sing N N 56 DA "C4'" "H4'" sing N N 57 DA "O4'" "C1'" sing N N 58 DA "C3'" "O3'" sing N N 59 DA "C3'" "C2'" sing N N 60 DA "C3'" "H3'" sing N N 61 DA "O3'" "HO3'" sing N N 62 DA "C2'" "C1'" sing N N 63 DA "C2'" "H2'" sing N N 64 DA "C2'" "H2''" sing N N 65 DA "C1'" N9 sing N N 66 DA "C1'" "H1'" sing N N 67 DA N9 C8 sing Y N 68 DA N9 C4 sing Y N 69 DA C8 N7 doub Y N 70 DA C8 H8 sing N N 71 DA N7 C5 sing Y N 72 DA C5 C6 sing Y N 73 DA C5 C4 doub Y N 74 DA C6 N6 sing N N 75 DA C6 N1 doub Y N 76 DA N6 H61 sing N N 77 DA N6 H62 sing N N 78 DA N1 C2 sing Y N 79 DA C2 N3 doub Y N 80 DA C2 H2 sing N N 81 DA N3 C4 sing Y N 82 DC OP3 P sing N N 83 DC OP3 HOP3 sing N N 84 DC P OP1 doub N N 85 DC P OP2 sing N N 86 DC P "O5'" sing N N 87 DC OP2 HOP2 sing N N 88 DC "O5'" "C5'" sing N N 89 DC "C5'" "C4'" sing N N 90 DC "C5'" "H5'" sing N N 91 DC "C5'" "H5''" sing N N 92 DC "C4'" "O4'" sing N N 93 DC "C4'" "C3'" sing N N 94 DC "C4'" "H4'" sing N N 95 DC "O4'" "C1'" sing N N 96 DC "C3'" "O3'" sing N N 97 DC "C3'" "C2'" sing N N 98 DC "C3'" "H3'" sing N N 99 DC "O3'" "HO3'" sing N N 100 DC "C2'" "C1'" sing N N 101 DC "C2'" "H2'" sing N N 102 DC "C2'" "H2''" sing N N 103 DC "C1'" N1 sing N N 104 DC "C1'" "H1'" sing N N 105 DC N1 C2 sing N N 106 DC N1 C6 sing N N 107 DC C2 O2 doub N N 108 DC C2 N3 sing N N 109 DC N3 C4 doub N N 110 DC C4 N4 sing N N 111 DC C4 C5 sing N N 112 DC N4 H41 sing N N 113 DC N4 H42 sing N N 114 DC C5 C6 doub N N 115 DC C5 H5 sing N N 116 DC C6 H6 sing N N 117 DG OP3 P sing N N 118 DG OP3 HOP3 sing N N 119 DG P OP1 doub N N 120 DG P OP2 sing N N 121 DG P "O5'" sing N N 122 DG OP2 HOP2 sing N N 123 DG "O5'" "C5'" sing N N 124 DG "C5'" "C4'" sing N N 125 DG "C5'" "H5'" sing N N 126 DG "C5'" "H5''" sing N N 127 DG "C4'" "O4'" sing N N 128 DG "C4'" "C3'" sing N N 129 DG "C4'" "H4'" sing N N 130 DG "O4'" "C1'" sing N N 131 DG "C3'" "O3'" sing N N 132 DG "C3'" "C2'" sing N N 133 DG "C3'" "H3'" sing N N 134 DG "O3'" "HO3'" sing N N 135 DG "C2'" "C1'" sing N N 136 DG "C2'" "H2'" sing N N 137 DG "C2'" "H2''" sing N N 138 DG "C1'" N9 sing N N 139 DG "C1'" "H1'" sing N N 140 DG N9 C8 sing Y N 141 DG N9 C4 sing Y N 142 DG C8 N7 doub Y N 143 DG C8 H8 sing N N 144 DG N7 C5 sing Y N 145 DG C5 C6 sing N N 146 DG C5 C4 doub Y N 147 DG C6 O6 doub N N 148 DG C6 N1 sing N N 149 DG N1 C2 sing N N 150 DG N1 H1 sing N N 151 DG C2 N2 sing N N 152 DG C2 N3 doub N N 153 DG N2 H21 sing N N 154 DG N2 H22 sing N N 155 DG N3 C4 sing N N 156 DT OP3 P sing N N 157 DT OP3 HOP3 sing N N 158 DT P OP1 doub N N 159 DT P OP2 sing N N 160 DT P "O5'" sing N N 161 DT OP2 HOP2 sing N N 162 DT "O5'" "C5'" sing N N 163 DT "C5'" "C4'" sing N N 164 DT "C5'" "H5'" sing N N 165 DT "C5'" "H5''" sing N N 166 DT "C4'" "O4'" sing N N 167 DT "C4'" "C3'" sing N N 168 DT "C4'" "H4'" sing N N 169 DT "O4'" "C1'" sing N N 170 DT "C3'" "O3'" sing N N 171 DT "C3'" "C2'" sing N N 172 DT "C3'" "H3'" sing N N 173 DT "O3'" "HO3'" sing N N 174 DT "C2'" "C1'" sing N N 175 DT "C2'" "H2'" sing N N 176 DT "C2'" "H2''" sing N N 177 DT "C1'" N1 sing N N 178 DT "C1'" "H1'" sing N N 179 DT N1 C2 sing N N 180 DT N1 C6 sing N N 181 DT C2 O2 doub N N 182 DT C2 N3 sing N N 183 DT N3 C4 sing N N 184 DT N3 H3 sing N N 185 DT C4 O4 doub N N 186 DT C4 C5 sing N N 187 DT C5 C7 sing N N 188 DT C5 C6 doub N N 189 DT C7 H71 sing N N 190 DT C7 H72 sing N N 191 DT C7 H73 sing N N 192 DT C6 H6 sing N N 193 HOH O H1 sing N N 194 HOH O H2 sing N N 195 OMU N1 C2 sing N N 196 OMU N1 C6 sing N N 197 OMU N1 "C1'" sing N N 198 OMU C2 N3 sing N N 199 OMU C2 O2 doub N N 200 OMU N3 C4 sing N N 201 OMU N3 HN3 sing N N 202 OMU C4 C5 sing N N 203 OMU C4 O4 doub N N 204 OMU C5 C6 doub N N 205 OMU C5 H5 sing N N 206 OMU C6 H6 sing N N 207 OMU "C1'" "C2'" sing N N 208 OMU "C1'" "O4'" sing N N 209 OMU "C1'" "H1'" sing N N 210 OMU "C2'" "O2'" sing N N 211 OMU "C2'" "C3'" sing N N 212 OMU "C2'" "H2'" sing N N 213 OMU "O2'" CM2 sing N N 214 OMU CM2 HM21 sing N N 215 OMU CM2 HM22 sing N N 216 OMU CM2 HM23 sing N N 217 OMU "C3'" "C4'" sing N N 218 OMU "C3'" "O3'" sing N N 219 OMU "C3'" "H3'" sing N N 220 OMU "C4'" "O4'" sing N N 221 OMU "C4'" "C5'" sing N N 222 OMU "C4'" "H4'" sing N N 223 OMU "O3'" "HO3'" sing N N 224 OMU "C5'" "O5'" sing N N 225 OMU "C5'" "H5'" sing N N 226 OMU "C5'" "H5''" sing N N 227 OMU "O5'" P sing N N 228 OMU P OP1 doub N N 229 OMU P OP2 sing N N 230 OMU P OP3 sing N N 231 OMU OP2 HOP2 sing N N 232 OMU OP3 HOP3 sing N N 233 # _ndb_struct_conf_na.entry_id 5E36 _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 8 1_555 -0.426 -0.080 -0.346 -18.946 -20.623 0.692 1 A_DG1:DC8_B A 1 ? B 8 ? 19 1 1 A OMU 2 1_555 B DA 7 1_555 -0.139 -0.041 0.122 -20.741 -10.737 -3.540 2 A_OMU2:DA7_B A 2 ? B 7 ? 20 1 1 A DG 3 1_555 B DC 6 1_555 -0.223 -0.130 0.040 -9.561 -10.254 1.554 3 A_DG3:DC6_B A 3 ? B 6 ? 19 1 1 A DC 6 1_555 B DG 3 1_555 0.280 -0.183 0.060 10.673 -9.153 -0.061 4 A_DC6:DG3_B A 6 ? B 3 ? 19 1 1 A DA 7 1_555 B OMU 2 1_555 0.073 -0.051 0.155 16.638 -11.913 -2.692 5 A_DA7:OMU2_B A 7 ? B 2 ? 20 1 1 A DC 8 1_555 B DG 1 1_555 0.356 -0.104 -0.085 14.800 -17.339 -0.765 6 A_DC8:DG1_B A 8 ? B 1 ? 19 1 1 C DG 1 1_555 C DC 8 3_554 -0.383 -0.130 -0.200 -17.755 -16.811 -0.389 7 C_DG1:DC8_C C 1 ? C 8 ? 19 1 1 C OMU 2 1_555 C DA 7 3_554 -0.217 -0.105 0.018 -19.179 -7.600 -3.815 8 C_OMU2:DA7_C C 2 ? C 7 ? 20 1 1 C DG 3 1_555 C DC 6 3_554 -0.146 -0.071 -0.088 -10.770 -9.471 1.103 9 C_DG3:DC6_C C 3 ? C 6 ? 19 1 1 C DG 1 1_555 C DC 8 1_555 -0.383 -0.130 -0.200 -17.755 -16.811 -0.389 10 C_DG1:DC8_C C 1 ? C 8 ? 19 1 1 C OMU 2 1_555 C DA 7 1_555 -0.217 -0.105 0.018 -19.179 -7.600 -3.815 11 C_OMU2:DA7_C C 2 ? C 7 ? 20 1 1 C DG 3 1_555 C DC 6 1_555 -0.146 -0.071 -0.088 -10.770 -9.471 1.103 12 C_DG3:DC6_C C 3 ? C 6 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 8 1_555 A OMU 2 1_555 B DA 7 1_555 -0.602 -1.002 3.328 -3.370 3.228 37.052 -1.996 0.489 3.273 5.054 5.277 37.335 1 AA_DG1OMU2:DA7DC8_BB A 1 ? B 8 ? A 2 ? B 7 ? 1 A OMU 2 1_555 B DA 7 1_555 A DG 3 1_555 B DC 6 1_555 0.534 -1.114 2.944 -1.303 12.283 30.475 -3.731 -1.132 2.311 22.253 2.361 32.828 2 AA_OMU2DG3:DC6DA7_BB A 2 ? B 7 ? A 3 ? B 6 ? 1 A DC 6 1_555 B DG 3 1_555 A DA 7 1_555 B OMU 2 1_555 -0.383 -1.192 3.095 1.323 12.744 30.406 -4.003 0.872 2.397 23.054 -2.393 32.937 3 AA_DC6DA7:OMU2DG3_BB A 6 ? B 3 ? A 7 ? B 2 ? 1 A DA 7 1_555 B OMU 2 1_555 A DC 8 1_555 B DG 1 1_555 0.589 -1.062 3.305 1.300 2.007 37.268 -1.925 -0.747 3.263 3.137 -2.032 37.342 4 AA_DA7DC8:DG1OMU2_BB A 7 ? B 2 ? A 8 ? B 1 ? 1 C DG 1 1_555 C DC 8 3_554 C OMU 2 1_555 C DA 7 3_554 -0.727 -1.051 3.262 -2.091 1.426 36.465 -1.872 0.872 3.255 2.275 3.337 36.550 5 CC_DG1OMU2:DA7DC8_CC C 1 ? C 8 ? C 2 ? C 7 ? 1 C OMU 2 1_555 C DA 7 3_554 C DG 3 1_555 C DC 6 3_554 0.467 -1.098 3.104 -1.116 12.513 31.072 -3.738 -0.974 2.472 22.252 1.984 33.457 6 CC_OMU2DG3:DC6DA7_CC C 2 ? C 7 ? C 3 ? C 6 ? 1 C DG 1 1_555 C DC 8 1_555 C OMU 2 1_555 C DA 7 1_555 -0.727 -1.051 3.262 -2.091 1.426 36.465 -1.872 0.872 3.255 2.275 3.337 36.550 7 CC_DG1OMU2:DA7DC8_CC C 1 ? C 8 ? C 2 ? C 7 ? 1 C OMU 2 1_555 C DA 7 1_555 C DG 3 1_555 C DC 6 1_555 0.467 -1.098 3.104 -1.115 12.513 31.072 -3.738 -0.974 2.472 22.252 1.984 33.457 8 CC_OMU2DG3:DC6DA7_CC C 2 ? C 7 ? C 3 ? C 6 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1Z7I _pdbx_initial_refinement_model.details ? # loop_ _pdbx_reflns_twin.domain_id _pdbx_reflns_twin.crystal_id _pdbx_reflns_twin.diffrn_id _pdbx_reflns_twin.type _pdbx_reflns_twin.operator _pdbx_reflns_twin.fraction 1 1 1 ? 'H, K, L' 0.323 2 1 1 ? '1/2H+1/2K, 3/2H-1/2K, -L' 0.383 3 1 1 ? '-1/2H+1/2K, 3/2H+1/2K, -L' 0.293 #