HEADER DNA 02-OCT-15 5E36 TITLE CRYSTAL STRUCTURE OF 2'-PROPARGYL-MODIFIED DNA 8MER-DUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*(OMU)P*GP*TP*(5JO)P*CP*AP*C)-3'); COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS MODIFIED DNA, 2'-PROPARGYL, DNA EXPDTA X-RAY DIFFRACTION AUTHOR J.SHENG,J.GAN REVDAT 2 27-SEP-23 5E36 1 REMARK LINK REVDAT 1 02-DEC-15 5E36 0 JRNL AUTH J.SHENG,J.GAN JRNL TITL CRYSTAL STRUCTURE OF 2'-PROPARGYL-MODIFIED DNA 8MER-DUPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 8752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 457 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 582 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.1580 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.1560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 498 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 204 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.27000 REMARK 3 B22 (A**2) : 5.71000 REMARK 3 B33 (A**2) : -2.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.016 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.016 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.398 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 555 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 267 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 846 ; 1.650 ; 1.393 REMARK 3 BOND ANGLES OTHERS (DEGREES): 630 ; 2.605 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 81 ; 0.457 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 279 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 114 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 3 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.323 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : 1/2H+1/2K, 3/2H-1/2K, -L REMARK 3 TWIN FRACTION : 0.383 REMARK 3 TWIN DOMAIN : 3 REMARK 3 TWIN OPERATOR : -1/2H+1/2K, 3/2H+1/2K, -L REMARK 3 TWIN FRACTION : 0.293 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5E36 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214278. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 99 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9231 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.22200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1Z7I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% 2-METHYL-2,4-PENTANEDIOL (MPD), 40 REMARK 280 MMSODIUMCACODYLATE(PH 7.0), 12 MMSPERMINE TETRA-HCL, 40 MMLICL, REMARK 280 80 MMSTRONTIUM CHLORIDE AND 20 MM MAGNESIUM CHLORIDE., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.84750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.84750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 16.01600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 27.76300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 16.01600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 27.76300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.84750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 16.01600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.76300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.84750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 16.01600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 27.76300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -37.84750 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG B 101 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 241 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 144 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 167 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MG MG A 101 O HOH A 207 1.58 REMARK 500 O HOH B 221 O HOH B 257 1.93 REMARK 500 O HOH B 202 O HOH B 257 1.99 REMARK 500 O HOH C 112 O HOH C 161 2.02 REMARK 500 O HOH B 223 O HOH B 257 2.04 REMARK 500 O HOH C 102 O HOH C 161 2.18 REMARK 500 O HOH C 138 O HOH C 161 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 161 O HOH C 161 3554 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 1 C5' - C4' - O4' ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 225 O REMARK 620 2 HOH A 233 O 87.8 REMARK 620 3 HOH A 264 O 92.4 130.3 REMARK 620 4 HOH B 221 O 144.1 63.2 91.3 REMARK 620 5 HOH B 257 O 155.8 113.6 65.5 51.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 241 O REMARK 620 2 HOH B 241 O 0.0 REMARK 620 3 HOH C 124 O 89.3 89.3 REMARK 620 4 HOH C 124 O 89.3 89.3 178.6 REMARK 620 5 HOH C 132 O 111.4 111.4 91.6 88.9 REMARK 620 6 HOH C 132 O 111.4 111.4 88.9 91.6 137.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 101 DBREF 5E36 A 1 8 PDB 5E36 5E36 1 8 DBREF 5E36 B 1 8 PDB 5E36 5E36 1 8 DBREF 5E36 C 1 8 PDB 5E36 5E36 1 8 SEQRES 1 A 8 DG OMU DG DT 5JO DC DA DC SEQRES 1 B 8 DG OMU DG DT 5JO DC DA DC SEQRES 1 C 8 DG OMU DG DT 5JO DC DA DC HET OMU A 2 21 HET 5JO A 5 25 HET OMU B 2 21 HET 5JO B 5 25 HET OMU C 2 21 HET 5JO C 5 25 HET MG A 101 1 HET MG B 101 1 HETNAM OMU O2'-METHYLURIDINE 5'-MONOPHOSPHATE HETNAM 5JO 2'-O-PROP-2-YN-1-YLADENOSINE 5'-(DIHYDROGEN PHOSPHATE) HETNAM MG MAGNESIUM ION HETSYN 5JO 2'-PROPARGYL-ADENOSINE FORMUL 1 OMU 3(C10 H15 N2 O9 P) FORMUL 1 5JO 3(C13 H16 N5 O7 P) FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *204(H2 O) LINK O3' DG A 1 P OMU A 2 1555 1555 1.60 LINK O3' OMU A 2 P DG A 3 1555 1555 1.60 LINK O3' DT A 4 P 5JO A 5 1555 1555 1.60 LINK O3' 5JO A 5 P DC A 6 1555 1555 1.61 LINK O3' DG B 1 P OMU B 2 1555 1555 1.62 LINK O3' OMU B 2 P DG B 3 1555 1555 1.61 LINK O3' DT B 4 P 5JO B 5 1555 1555 1.59 LINK O3' 5JO B 5 P DC B 6 1555 1555 1.60 LINK O3' DG C 1 P OMU C 2 1555 1555 1.61 LINK O3' OMU C 2 P DG C 3 1555 1555 1.60 LINK O3' DT C 4 P 5JO C 5 1555 1555 1.59 LINK O3' 5JO C 5 P DC C 6 1555 1555 1.60 LINK MG MG A 101 O HOH A 225 1555 1555 2.21 LINK MG MG A 101 O HOH A 233 1555 1555 2.33 LINK MG MG A 101 O HOH A 264 1555 1555 2.06 LINK MG MG A 101 O HOH B 221 1555 1555 2.35 LINK MG MG A 101 O HOH B 257 1555 1555 2.05 LINK MG MG B 101 O HOH B 241 1555 1555 2.51 LINK MG MG B 101 O HOH B 241 1555 3554 2.51 LINK MG MG B 101 O HOH C 124 1555 1555 2.43 LINK MG MG B 101 O HOH C 124 1555 3554 2.43 LINK MG MG B 101 O HOH C 132 1555 1555 2.17 LINK MG MG B 101 O HOH C 132 1555 3554 2.17 SITE 1 AC1 7 HOH A 207 HOH A 225 HOH A 233 HOH A 264 SITE 2 AC1 7 HOH B 221 HOH B 257 HOH B 268 SITE 1 AC2 3 HOH B 241 HOH C 124 HOH C 132 CRYST1 32.032 55.526 75.695 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031219 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018010 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013211 0.00000 CONECT 6 38 CONECT 20 21 25 28 CONECT 21 20 22 26 CONECT 22 21 23 CONECT 23 22 24 27 CONECT 24 23 25 CONECT 25 20 24 CONECT 26 21 CONECT 27 23 CONECT 28 20 29 35 CONECT 29 28 30 32 CONECT 30 29 31 CONECT 31 30 CONECT 32 29 33 34 CONECT 33 32 35 36 CONECT 34 32 41 CONECT 35 28 33 CONECT 36 33 37 CONECT 37 36 38 CONECT 38 6 37 39 40 CONECT 39 38 CONECT 40 38 CONECT 41 34 CONECT 71 102 CONECT 83 84 102 CONECT 84 83 85 CONECT 85 84 86 87 CONECT 86 85 91 CONECT 87 85 88 89 CONECT 88 87 108 CONECT 89 87 90 91 CONECT 90 89 105 CONECT 91 86 89 92 CONECT 92 91 93 101 CONECT 93 92 94 CONECT 94 93 95 CONECT 95 94 96 101 CONECT 96 95 97 98 CONECT 97 96 CONECT 98 96 99 CONECT 99 98 100 CONECT 100 99 101 CONECT 101 92 95 100 CONECT 102 71 83 103 104 CONECT 103 102 CONECT 104 102 CONECT 105 90 106 CONECT 106 105 107 CONECT 107 106 CONECT 108 88 CONECT 173 205 CONECT 187 188 192 195 CONECT 188 187 189 193 CONECT 189 188 190 CONECT 190 189 191 194 CONECT 191 190 192 CONECT 192 187 191 CONECT 193 188 CONECT 194 190 CONECT 195 187 196 202 CONECT 196 195 197 199 CONECT 197 196 198 CONECT 198 197 CONECT 199 196 200 201 CONECT 200 199 202 203 CONECT 201 199 208 CONECT 202 195 200 CONECT 203 200 204 CONECT 204 203 205 CONECT 205 173 204 206 207 CONECT 206 205 CONECT 207 205 CONECT 208 201 CONECT 238 269 CONECT 250 251 269 CONECT 251 250 252 CONECT 252 251 253 254 CONECT 253 252 258 CONECT 254 252 255 256 CONECT 255 254 275 CONECT 256 254 257 258 CONECT 257 256 272 CONECT 258 253 256 259 CONECT 259 258 260 268 CONECT 260 259 261 CONECT 261 260 262 CONECT 262 261 263 268 CONECT 263 262 264 265 CONECT 264 263 CONECT 265 263 266 CONECT 266 265 267 CONECT 267 266 268 CONECT 268 259 262 267 CONECT 269 238 250 270 271 CONECT 270 269 CONECT 271 269 CONECT 272 257 273 CONECT 273 272 274 CONECT 274 273 CONECT 275 255 CONECT 340 372 CONECT 354 355 359 362 CONECT 355 354 356 360 CONECT 356 355 357 CONECT 357 356 358 361 CONECT 358 357 359 CONECT 359 354 358 CONECT 360 355 CONECT 361 357 CONECT 362 354 363 369 CONECT 363 362 364 366 CONECT 364 363 365 CONECT 365 364 CONECT 366 363 367 368 CONECT 367 366 369 370 CONECT 368 366 375 CONECT 369 362 367 CONECT 370 367 371 CONECT 371 370 372 CONECT 372 340 371 373 374 CONECT 373 372 CONECT 374 372 CONECT 375 368 CONECT 405 436 CONECT 417 418 436 CONECT 418 417 419 CONECT 419 418 420 421 CONECT 420 419 425 CONECT 421 419 422 423 CONECT 422 421 442 CONECT 423 421 424 425 CONECT 424 423 439 CONECT 425 420 423 426 CONECT 426 425 427 435 CONECT 427 426 428 CONECT 428 427 429 CONECT 429 428 430 435 CONECT 430 429 431 432 CONECT 431 430 CONECT 432 430 433 CONECT 433 432 434 CONECT 434 433 435 CONECT 435 426 429 434 CONECT 436 405 417 437 438 CONECT 437 436 CONECT 438 436 CONECT 439 424 440 CONECT 440 439 441 CONECT 441 440 CONECT 442 422 CONECT 502 528 536 567 589 CONECT 502 625 CONECT 503 609 660 668 CONECT 528 502 CONECT 536 502 CONECT 567 502 CONECT 589 502 CONECT 609 503 CONECT 625 502 CONECT 660 503 CONECT 668 503 MASTER 381 0 8 0 0 0 3 6 704 3 161 3 END