HEADER LYASE 04-OCT-15 5E3V TITLE TRUNCATED X-RAY CRYSTAL STRUCTURE OF ADENYLOSUCCINATE LYASE FROM TITLE 2 SALMONELLA TYPHIMURIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLOSUCCINATE LYASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-366; COMPND 5 SYNONYM: ASL,ADENYLOSUCCINASE; COMPND 6 EC: 4.3.2.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM (STRAIN 14028S / SGSC SOURCE 3 2262); SOURCE 4 ORGANISM_TAXID: 588858; SOURCE 5 STRAIN: 14028S / SGSC 2262; SOURCE 6 GENE: PURB, STM14_1410; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSS KEYWDS ADENYLOSUCCINATE, PURINE BIOSYNTHESIS FOLDING, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.BANERJEE,M.J.AGRAWAL,M.R.N.MURTHY REVDAT 2 08-NOV-23 5E3V 1 JRNL REMARK REVDAT 1 05-OCT-16 5E3V 0 JRNL AUTH S.BANERJEE,M.J.AGRAWAL,N.M.MURTHY,H.BALARAM,H.S.SAVITHRI, JRNL AUTH 2 M.R.N.MURTHY JRNL TITL CRYSTALLOGRAPHIC AND KINETIC STUDIES ON ADENYLOSUCCINATE JRNL TITL 2 LYASE FROM SALMONELLA TYPHIMURIUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14254 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.277 REMARK 3 R VALUE (WORKING SET) : 0.274 REMARK 3 FREE R VALUE : 0.326 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 760 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1042 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2262 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 19 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.79000 REMARK 3 B22 (A**2) : -1.79000 REMARK 3 B33 (A**2) : 3.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.509 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.362 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.336 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 35.940 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.911 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2307 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3144 ; 1.933 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 304 ;10.315 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;40.054 ;25.052 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 318 ;21.253 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;16.350 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 370 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1761 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1538 ; 0.759 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2417 ; 1.397 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 769 ; 2.116 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 727 ; 3.388 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 366 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6450 10.3700 -24.1490 REMARK 3 T TENSOR REMARK 3 T11: 0.5004 T22: 0.3925 REMARK 3 T33: 0.0662 T12: -0.0154 REMARK 3 T13: -0.0833 T23: -0.0409 REMARK 3 L TENSOR REMARK 3 L11: 3.4040 L22: 4.1946 REMARK 3 L33: 2.3238 L12: 0.8524 REMARK 3 L13: -0.5827 L23: -0.1034 REMARK 3 S TENSOR REMARK 3 S11: 0.0606 S12: -0.3512 S13: 0.2402 REMARK 3 S21: 0.6304 S22: -0.0391 S23: -0.1773 REMARK 3 S31: -0.1210 S32: 0.1915 S33: -0.0214 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5E3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214304. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : BENT COLLIMATING MIRROR AND REMARK 200 TOROID REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15037 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.720 REMARK 200 RESOLUTION RANGE LOW (A) : 54.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2PTS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE TRIHYDRATE PH 4.0 REMARK 280 AND 10% JEFFAMINE M-600 PH 7.0 AND 0.1M EDTA, UNDER OIL REMARK 280 MICROBATCH METHOD, EVAPORATION, TEMPERATURE 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 82.68000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 82.68000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.56000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 82.68000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.78000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 82.68000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.34000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 82.68000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 59.34000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 82.68000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.78000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 82.68000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 82.68000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.56000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 82.68000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 82.68000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 39.56000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 82.68000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 59.34000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 82.68000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 19.78000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 82.68000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 19.78000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 82.68000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 59.34000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 82.68000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 82.68000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 39.56000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -79.12000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -79.12000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ARG A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 GLY A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 ALA A 51 REMARK 465 ALA A 52 REMARK 465 ILE A 53 REMARK 465 LYS A 54 REMARK 465 GLU A 55 REMARK 465 VAL A 56 REMARK 465 PRO A 57 REMARK 465 ALA A 58 REMARK 465 PHE A 59 REMARK 465 ALA A 60 REMARK 465 ALA A 61 REMARK 465 ASP A 62 REMARK 465 ALA A 63 REMARK 465 ASN A 64 REMARK 465 GLY A 65 REMARK 465 TYR A 66 REMARK 465 ALA A 106 REMARK 465 ILE A 107 REMARK 465 PRO A 108 REMARK 465 ALA A 109 REMARK 465 LEU A 110 REMARK 465 HIS A 111 REMARK 465 ASP A 112 REMARK 465 VAL A 113 REMARK 465 SER A 114 REMARK 465 GLU A 115 REMARK 465 GLY A 209 REMARK 465 ALA A 210 REMARK 465 VAL A 211 REMARK 465 GLY A 212 REMARK 465 ASN A 213 REMARK 465 TYR A 214 REMARK 465 LYS A 287 REMARK 465 THR A 288 REMARK 465 ILE A 289 REMARK 465 ALA A 290 REMARK 465 GLY A 291 REMARK 465 GLU A 292 REMARK 465 ILE A 293 REMARK 465 GLY A 294 REMARK 465 SER A 295 REMARK 465 SER A 296 REMARK 465 THR A 297 REMARK 465 MET A 298 REMARK 465 PRO A 299 REMARK 465 HIS A 300 REMARK 465 LYS A 301 REMARK 465 PRO A 329 REMARK 465 VAL A 330 REMARK 465 SER A 331 REMARK 465 ARG A 332 REMARK 465 TRP A 333 REMARK 465 GLN A 334 REMARK 465 ARG A 335 REMARK 465 ASP A 336 REMARK 465 LEU A 337 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 LEU A 6 CG CD1 CD2 REMARK 470 ARG A 15 CD NE CZ NH1 NH2 REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 LYS A 34 NZ REMARK 470 ARG A 36 CZ NH1 NH2 REMARK 470 ARG A 42 NE CZ NH1 NH2 REMARK 470 LYS A 46 CE NZ REMARK 470 LEU A 47 CG CD1 CD2 REMARK 470 LEU A 67 CG CD1 CD2 REMARK 470 ASP A 68 CG OD1 OD2 REMARK 470 LEU A 70 CG CD1 CD2 REMARK 470 VAL A 71 CG1 CG2 REMARK 470 ASN A 73 CG OD1 ND2 REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 ARG A 81 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 82 CG1 CG2 CD1 REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 ARG A 87 NE CZ NH1 NH2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 VAL A 96 CG1 CG2 REMARK 470 GLU A 97 CG CD OE1 OE2 REMARK 470 LEU A 100 CG CD1 CD2 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 LYS A 103 CE NZ REMARK 470 PHE A 116 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 117 CG1 CG2 CD1 REMARK 470 HIS A 118 CG ND1 CD2 CE1 NE2 REMARK 470 PHE A 119 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 ARG A 139 CZ NH1 NH2 REMARK 470 LEU A 157 CD2 REMARK 470 THR A 159 OG1 CG2 REMARK 470 ARG A 162 CG CD NE CZ NH1 NH2 REMARK 470 SER A 168 OG REMARK 470 ARG A 169 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 173 CG CD OE1 NE2 REMARK 470 THR A 176 OG1 CG2 REMARK 470 SER A 178 OG REMARK 470 THR A 179 OG1 REMARK 470 LEU A 180 CG CD1 CD2 REMARK 470 LYS A 182 CD CE NZ REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 ASN A 208 CG OD1 ND2 REMARK 470 ASN A 215 CG OD1 ND2 REMARK 470 HIS A 217 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 218 CG1 CG2 CD1 REMARK 470 TYR A 221 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TRP A 241 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 241 CZ3 CH2 REMARK 470 ILE A 248 CG1 CG2 CD1 REMARK 470 ILE A 269 CG1 CG2 CD1 REMARK 470 ARG A 273 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 276 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 276 CZ3 CH2 REMARK 470 LEU A 281 CD1 REMARK 470 ASN A 282 CG OD1 ND2 REMARK 470 HIS A 283 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 GLN A 286 CG CD OE1 NE2 REMARK 470 VAL A 302 CG1 CG2 REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 LEU A 361 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TRP A 43 N LYS A 46 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 2 -155.71 -45.77 REMARK 500 LEU A 3 87.45 -158.48 REMARK 500 LYS A 19 -34.14 62.42 REMARK 500 ILE A 26 -54.61 -129.80 REMARK 500 VAL A 39 -66.05 88.20 REMARK 500 LEU A 47 -16.90 -44.78 REMARK 500 ALA A 49 46.90 -76.15 REMARK 500 ASN A 73 46.00 -90.17 REMARK 500 GLU A 86 -156.64 -96.24 REMARK 500 ARG A 87 1.11 49.19 REMARK 500 ASP A 92 -65.10 71.40 REMARK 500 LYS A 94 21.01 93.98 REMARK 500 LYS A 103 34.38 -74.50 REMARK 500 PHE A 119 52.11 -58.24 REMARK 500 GLU A 124 -67.71 97.06 REMARK 500 VAL A 142 -72.22 -141.74 REMARK 500 GLN A 160 -32.01 178.87 REMARK 500 ASP A 163 -28.57 84.78 REMARK 500 LEU A 167 -137.27 35.61 REMARK 500 SER A 168 -85.19 77.90 REMARK 500 ARG A 169 70.45 154.74 REMARK 500 THR A 170 -99.27 39.55 REMARK 500 ALA A 175 -71.00 66.70 REMARK 500 THR A 176 119.21 -167.28 REMARK 500 SER A 178 -152.90 -129.42 REMARK 500 ASN A 199 -48.63 84.16 REMARK 500 ILE A 218 -6.67 -47.39 REMARK 500 ALA A 219 33.91 -81.18 REMARK 500 GLN A 228 -61.71 130.34 REMARK 500 ASN A 242 -144.16 66.52 REMARK 500 PRO A 243 -95.50 -78.69 REMARK 500 TYR A 244 -38.71 48.82 REMARK 500 THR A 245 -135.11 -148.06 REMARK 500 GLN A 247 -51.04 -164.51 REMARK 500 HIS A 251 8.85 81.05 REMARK 500 ASP A 252 66.33 -119.89 REMARK 500 VAL A 275 -72.24 -54.71 REMARK 500 TRP A 276 106.31 -57.43 REMARK 500 HIS A 283 53.64 -95.53 REMARK 500 LYS A 285 -86.52 -120.48 REMARK 500 PRO A 304 3.85 -68.46 REMARK 500 ASP A 306 -42.32 92.88 REMARK 500 VAL A 364 108.45 68.14 REMARK 500 SER A 365 59.19 105.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP A 241 ASN A 242 134.37 REMARK 500 ASN A 242 PRO A 243 -125.91 REMARK 500 PRO A 243 TYR A 244 -149.01 REMARK 500 TYR A 244 THR A 245 139.10 REMARK 500 ASP A 252 TYR A 253 147.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NSL RELATED DB: PDB REMARK 900 4NSL IS THE FULL-LENGTH STRUCTURE OF THE SAME PROTEIN DBREF1 5E3V A 1 366 UNP A0A0F6B070_SALT1 DBREF2 5E3V A A0A0F6B070 1 366 SEQADV 5E3V MET A -13 UNP A0A0F6B07 INITIATING METHIONINE SEQADV 5E3V ARG A -12 UNP A0A0F6B07 EXPRESSION TAG SEQADV 5E3V GLY A -11 UNP A0A0F6B07 EXPRESSION TAG SEQADV 5E3V SER A -10 UNP A0A0F6B07 EXPRESSION TAG SEQADV 5E3V HIS A -9 UNP A0A0F6B07 EXPRESSION TAG SEQADV 5E3V HIS A -8 UNP A0A0F6B07 EXPRESSION TAG SEQADV 5E3V HIS A -7 UNP A0A0F6B07 EXPRESSION TAG SEQADV 5E3V HIS A -6 UNP A0A0F6B07 EXPRESSION TAG SEQADV 5E3V HIS A -5 UNP A0A0F6B07 EXPRESSION TAG SEQADV 5E3V HIS A -4 UNP A0A0F6B07 EXPRESSION TAG SEQADV 5E3V GLY A -3 UNP A0A0F6B07 EXPRESSION TAG SEQADV 5E3V MET A -2 UNP A0A0F6B07 EXPRESSION TAG SEQADV 5E3V ALA A -1 UNP A0A0F6B07 EXPRESSION TAG SEQADV 5E3V SER A 0 UNP A0A0F6B07 EXPRESSION TAG SEQRES 1 A 380 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 380 SER MET GLU LEU SER SER LEU THR ALA VAL SER PRO VAL SEQRES 3 A 380 ASP GLY ARG TYR GLY ASP LYS VAL SER ALA LEU ARG GLY SEQRES 4 A 380 ILE PHE SER GLU TYR GLY LEU LEU LYS PHE ARG VAL GLN SEQRES 5 A 380 VAL GLU VAL ARG TRP LEU GLN LYS LEU ALA ALA HIS ALA SEQRES 6 A 380 ALA ILE LYS GLU VAL PRO ALA PHE ALA ALA ASP ALA ASN SEQRES 7 A 380 GLY TYR LEU ASP THR LEU VAL ALA ASN PHE ASN GLU GLU SEQRES 8 A 380 ASP ALA ALA ARG ILE LYS THR ILE GLU ARG THR THR ASN SEQRES 9 A 380 HIS ASP VAL LYS ALA VAL GLU TYR PHE LEU LYS GLU LYS SEQRES 10 A 380 VAL ALA ALA ILE PRO ALA LEU HIS ASP VAL SER GLU PHE SEQRES 11 A 380 ILE HIS PHE ALA CYS THR SER GLU ASP ILE ASN ASN LEU SEQRES 12 A 380 SER HIS ALA LEU MET LEU LYS THR ALA ARG ASP GLU VAL SEQRES 13 A 380 ILE LEU PRO TYR TRP ARG GLN VAL ILE ASN ALA VAL LYS SEQRES 14 A 380 ASP LEU ALA THR GLN TYR ARG ASP ILE PRO LEU LEU SER SEQRES 15 A 380 ARG THR HIS GLY GLN PRO ALA THR PRO SER THR LEU GLY SEQRES 16 A 380 LYS GLU MET ALA ASN VAL ALA TYR ARG MET GLU ARG GLN SEQRES 17 A 380 PHE ARG GLN LEU ASN GLN VAL GLU ILE LEU GLY LYS ILE SEQRES 18 A 380 ASN GLY ALA VAL GLY ASN TYR ASN ALA HIS ILE ALA ALA SEQRES 19 A 380 TYR PRO GLU VAL ASP TRP HIS GLN PHE SER GLU GLU PHE SEQRES 20 A 380 VAL THR SER LEU GLY ILE GLN TRP ASN PRO TYR THR THR SEQRES 21 A 380 GLN ILE GLU PRO HIS ASP TYR ILE ALA GLU LEU PHE ASP SEQRES 22 A 380 CYS ILE ALA ARG PHE ASN THR ILE LEU ILE ASP PHE ASP SEQRES 23 A 380 ARG ASP VAL TRP GLY TYR ILE ALA LEU ASN HIS PHE LYS SEQRES 24 A 380 GLN LYS THR ILE ALA GLY GLU ILE GLY SER SER THR MET SEQRES 25 A 380 PRO HIS LYS VAL ASN PRO ILE ASP PHE GLU ASN SER GLU SEQRES 26 A 380 GLY ASN LEU GLY LEU SER ASN ALA VAL LEU HIS HIS LEU SEQRES 27 A 380 ALA ASN LYS LEU PRO VAL SER ARG TRP GLN ARG ASP LEU SEQRES 28 A 380 THR ASP SER THR VAL LEU ARG ASN LEU GLY VAL GLY ILE SEQRES 29 A 380 GLY TYR ALA LEU ILE ALA TYR GLN SER THR LEU LYS GLY SEQRES 30 A 380 VAL SER LYS FORMUL 2 HOH *19(H2 O) HELIX 1 AA1 VAL A 20 ILE A 26 5 7 HELIX 2 AA2 SER A 28 GLN A 45 1 18 HELIX 3 AA3 LYS A 46 ALA A 49 5 4 HELIX 4 AA4 ASN A 75 ILE A 85 1 11 HELIX 5 AA5 LYS A 94 LYS A 103 1 10 HELIX 6 AA6 GLU A 124 VAL A 142 1 19 HELIX 7 AA7 VAL A 142 THR A 159 1 18 HELIX 8 AA8 GLY A 181 LEU A 198 1 18 HELIX 9 AA9 ASP A 225 LEU A 237 1 13 HELIX 10 AB1 TYR A 253 ASN A 282 1 30 HELIX 11 AB2 ASP A 306 LYS A 327 1 22 HELIX 12 AB3 ASP A 339 ARG A 344 1 6 HELIX 13 AB4 ASN A 345 GLY A 363 1 19 SHEET 1 AA1 2 LEU A 204 GLY A 205 0 SHEET 2 AA1 2 GLN A 240 TRP A 241 1 O GLN A 240 N GLY A 205 CRYST1 165.360 165.360 79.120 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006047 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006047 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012639 0.00000