HEADER HYDROLASE 05-OCT-15 5E43 TITLE CRYSTAL STRUCTURE OF BETA-LACTAMASE SROS_5706 FROM STREPTOSPORANGIUM TITLE 2 ROSEUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOSPORANGIUM ROSEUM (STRAIN ATCC 12428 / SOURCE 3 DSM 43021 / JCM 3005 / NI 9100); SOURCE 4 ORGANISM_TAXID: 479432; SOURCE 5 STRAIN: ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100; SOURCE 6 GENE: SROS_5706; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD KEYWDS BETA-LACTAMASE, STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, MCSG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,C.HATZOS-SKINTGES,M.ENDRES,G.BABNIGG,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 25-DEC-19 5E43 1 REMARK REVDAT 2 06-SEP-17 5E43 1 REMARK REVDAT 1 14-OCT-15 5E43 0 JRNL AUTH Y.KIM,C.HATZOS-SKINTGES,M.ENDRES,G.BABNIGG,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF BETA-LACTAMASE SROS_5706 FROM JRNL TITL 2 STREPTOSPORANGIUM ROSEUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10PRE_2104: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 32119 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1497 - 3.9109 0.99 2676 162 0.1581 0.1700 REMARK 3 2 3.9109 - 3.1054 1.00 2612 143 0.1495 0.1710 REMARK 3 3 3.1054 - 2.7131 1.00 2616 119 0.1606 0.1906 REMARK 3 4 2.7131 - 2.4652 1.00 2606 123 0.1580 0.2048 REMARK 3 5 2.4652 - 2.2886 1.00 2553 154 0.1477 0.1764 REMARK 3 6 2.2886 - 2.1537 1.00 2573 125 0.1434 0.1852 REMARK 3 7 2.1537 - 2.0459 1.00 2559 135 0.1455 0.1835 REMARK 3 8 2.0459 - 1.9568 1.00 2578 132 0.1535 0.1993 REMARK 3 9 1.9568 - 1.8815 1.00 2537 142 0.1589 0.1901 REMARK 3 10 1.8815 - 1.8166 1.00 2561 127 0.1834 0.1867 REMARK 3 11 1.8166 - 1.7598 1.00 2539 149 0.2229 0.2804 REMARK 3 12 1.7598 - 1.7095 0.83 2084 114 0.2668 0.3020 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2160 REMARK 3 ANGLE : 0.973 2915 REMARK 3 CHIRALITY : 0.062 330 REMARK 3 PLANARITY : 0.006 388 REMARK 3 DIHEDRAL : 15.076 1275 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0733 3.3295 26.7689 REMARK 3 T TENSOR REMARK 3 T11: 0.2937 T22: 0.2198 REMARK 3 T33: 0.2209 T12: -0.0042 REMARK 3 T13: -0.0179 T23: -0.0351 REMARK 3 L TENSOR REMARK 3 L11: 2.0287 L22: 7.0286 REMARK 3 L33: 5.9821 L12: 1.6981 REMARK 3 L13: 0.6132 L23: 0.1479 REMARK 3 S TENSOR REMARK 3 S11: -0.0238 S12: 0.3275 S13: -0.5268 REMARK 3 S21: -0.5340 S22: -0.0320 S23: 0.2651 REMARK 3 S31: 0.3692 S32: -0.3192 S33: 0.0924 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6072 12.6759 43.5136 REMARK 3 T TENSOR REMARK 3 T11: 0.1579 T22: 0.1646 REMARK 3 T33: 0.1493 T12: -0.0036 REMARK 3 T13: 0.0109 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.8331 L22: 1.2820 REMARK 3 L33: 1.0812 L12: 0.0489 REMARK 3 L13: 0.5009 L23: 0.5924 REMARK 3 S TENSOR REMARK 3 S11: 0.0305 S12: 0.0533 S13: -0.0614 REMARK 3 S21: -0.0185 S22: -0.0755 S23: 0.0694 REMARK 3 S31: 0.0514 S32: -0.0709 S33: 0.0419 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.2098 32.0795 54.3458 REMARK 3 T TENSOR REMARK 3 T11: 0.1860 T22: 0.1565 REMARK 3 T33: 0.1656 T12: -0.0045 REMARK 3 T13: 0.0029 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 2.0410 L22: 1.1670 REMARK 3 L33: 1.6642 L12: 0.3324 REMARK 3 L13: 0.4403 L23: 0.4510 REMARK 3 S TENSOR REMARK 3 S11: -0.0604 S12: 0.1539 S13: 0.1476 REMARK 3 S21: -0.0918 S22: 0.0764 S23: -0.0455 REMARK 3 S31: -0.1701 S32: 0.1035 S33: -0.0212 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1797 17.7080 48.0018 REMARK 3 T TENSOR REMARK 3 T11: 0.1558 T22: 0.1763 REMARK 3 T33: 0.1624 T12: 0.0019 REMARK 3 T13: 0.0089 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.7812 L22: 1.0570 REMARK 3 L33: 1.6808 L12: 0.0967 REMARK 3 L13: 0.3414 L23: 0.5683 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: 0.0177 S13: 0.0010 REMARK 3 S21: 0.0232 S22: -0.0048 S23: 0.0217 REMARK 3 S31: -0.0119 S32: -0.0436 S33: 0.0040 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 231 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1189 15.4666 34.1830 REMARK 3 T TENSOR REMARK 3 T11: 0.1849 T22: 0.1820 REMARK 3 T33: 0.1488 T12: 0.0140 REMARK 3 T13: 0.0058 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 2.4795 L22: 2.0042 REMARK 3 L33: 2.0489 L12: 0.3264 REMARK 3 L13: 0.2671 L23: 0.3977 REMARK 3 S TENSOR REMARK 3 S11: -0.0412 S12: 0.1032 S13: -0.0317 REMARK 3 S21: -0.1319 S22: 0.0134 S23: -0.1113 REMARK 3 S31: -0.0661 S32: 0.0895 S33: 0.0387 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E43 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214319. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32159 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14900 REMARK 200 FOR THE DATA SET : 17.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.77900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.890 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6.0 M AMMONIUM NITRATE, 0.1 M, SODIUM REMARK 280 ACETATE TRIHYDRATE PH 4.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.81450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.81450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.42250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.46600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.42250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.46600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.81450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.42250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.46600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.81450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.42250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.46600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 N NO3 A 301 LIES ON A SPECIAL POSITION. REMARK 375 O1 NO3 A 301 LIES ON A SPECIAL POSITION. REMARK 375 N NO3 A 309 LIES ON A SPECIAL POSITION. REMARK 375 O1 NO3 A 309 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 486 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 497 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 PRO A 6 REMARK 465 LEU A 7 REMARK 465 THR A 8 REMARK 465 ALA A 9 REMARK 465 THR A 10 REMARK 465 PRO A 11 REMARK 465 THR A 12 REMARK 465 PRO A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 PRO A 17 REMARK 465 ALA A 18 REMARK 465 THR A 19 REMARK 465 ALA A 20 REMARK 465 MSE A 21 REMARK 465 GLN A 22 REMARK 465 ALA A 23 REMARK 465 ALA A 24 REMARK 465 PRO A 25 REMARK 465 ASP A 26 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 521 O HOH A 523 3656 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 69 -145.94 48.50 REMARK 500 SER A 87 -13.03 -146.67 REMARK 500 HIS A 106 71.02 52.77 REMARK 500 ARG A 221 -117.96 -111.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 319 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC115001 RELATED DB: TARGETTRACK DBREF 5E43 A -2 294 UNP D2ARB3 D2ARB3_STRRD 31 327 SEQADV 5E43 SER A -2 UNP D2ARB3 ALA 31 CONFLICT SEQADV 5E43 ASN A -1 UNP D2ARB3 SER 32 CONFLICT SEQRES 1 A 297 SER ASN ALA ALA PRO ALA ALA THR PRO LEU THR ALA THR SEQRES 2 A 297 PRO THR PRO ALA ALA ALA PRO ALA THR ALA MSE GLN ALA SEQRES 3 A 297 ALA PRO ASP GLY ALA ARG ALA ARG LYS GLU LEU ARG THR SEQRES 4 A 297 LEU GLU ALA SER PHE LYS GLY ARG ILE GLY ALA TYR ALA SEQRES 5 A 297 VAL ASP THR ALA THR GLY LYS THR ILE THR TYR ARG SER SEQRES 6 A 297 GLY GLU ARG PHE PRO LEU LEU SER THR PHE LYS ALA ILE SEQRES 7 A 297 ALA ALA ALA ALA VAL LEU HIS LYS ALA ARG THR SER ASP SEQRES 8 A 297 PRO GLY LEU LEU ASN LYS VAL VAL HIS TRP THR THR ALA SEQRES 9 A 297 GLU LEU GLN GLU HIS SER PRO VAL THR GLY LYS HIS VAL SEQRES 10 A 297 LYS ASP GLY MSE THR VAL ALA ARG LEU CYS GLU ALA ALA SEQRES 11 A 297 ILE THR ARG SER ASP ASN THR ALA ALA ASN MSE LEU LEU SEQRES 12 A 297 LYS GLN ILE GLY GLY PRO ALA GLY LEU THR ALA TYR PHE SEQRES 13 A 297 HIS THR LEU LYS ASP PRO VAL SER ARG LEU ASP ARG TRP SEQRES 14 A 297 GLU THR GLU LEU ASN ASN TRP SER PRO LYS GLU LYS ARG SEQRES 15 A 297 ASP THR THR THR PRO ALA SER MSE GLY ARG ASP LEU ARG SEQRES 16 A 297 ALA VAL THR THR GLY ASP ALA LEU ASP ALA ARG ASP ARG SEQRES 17 A 297 GLU ARG LEU ASN ALA TRP LEU THR ALA ASN LYS THR GLY SEQRES 18 A 297 ASP ALA ARG ILE ARG ALA GLY LEU PRO LYS THR TRP THR SEQRES 19 A 297 VAL GLY ASP LYS THR GLY THR ASN SER LYS TYR GLY ALA SEQRES 20 A 297 GLY ASN ASP ILE ALA VAL VAL TRP PRO GLY LYS SER ALA SEQRES 21 A 297 ALA PRO ILE ILE MSE SER ILE TYR THR ASN ARG GLY ALA SEQRES 22 A 297 ALA ASP ALA ALA VAL ASP ASP LYS VAL ILE ALA ASP THR SEQRES 23 A 297 ALA ALA ILE LEU ALA ARG ALA LEU GLY LYS LEU MODRES 5E43 MSE A 118 MET MODIFIED RESIDUE MODRES 5E43 MSE A 138 MET MODIFIED RESIDUE MODRES 5E43 MSE A 187 MET MODIFIED RESIDUE MODRES 5E43 MSE A 262 MET MODIFIED RESIDUE HET MSE A 118 8 HET MSE A 138 8 HET MSE A 187 8 HET MSE A 262 8 HET NO3 A 301 4 HET ACT A 302 4 HET ACT A 303 4 HET ACT A 304 4 HET ACT A 305 4 HET ACT A 306 4 HET ACT A 307 4 HET ACT A 308 4 HET NO3 A 309 4 HET ACT A 310 4 HET ACT A 311 4 HET ACT A 312 4 HET ACT A 313 4 HET ACT A 314 4 HET ACT A 315 4 HET ACT A 316 4 HET ACT A 317 4 HET ACT A 318 4 HET ACT A 319 4 HETNAM MSE SELENOMETHIONINE HETNAM NO3 NITRATE ION HETNAM ACT ACETATE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 NO3 2(N O3 1-) FORMUL 3 ACT 17(C2 H3 O2 1-) FORMUL 21 HOH *155(H2 O) HELIX 1 AA1 GLY A 27 LYS A 42 1 16 HELIX 2 AA2 THR A 71 SER A 87 1 17 HELIX 3 AA3 GLY A 90 ASN A 93 5 4 HELIX 4 AA4 THR A 99 LEU A 103 5 5 HELIX 5 AA5 VAL A 109 HIS A 113 5 5 HELIX 6 AA6 VAL A 120 ARG A 130 1 11 HELIX 7 AA7 ASP A 132 LYS A 141 1 10 HELIX 8 AA8 GLY A 144 LEU A 156 1 13 HELIX 9 AA9 THR A 168 ASN A 172 5 5 HELIX 10 AB1 THR A 183 THR A 196 1 14 HELIX 11 AB2 ASP A 201 ALA A 214 1 14 HELIX 12 AB3 ARG A 221 LEU A 226 1 6 HELIX 13 AB4 SER A 240 GLY A 243 5 4 HELIX 14 AB5 ASP A 276 LEU A 291 1 16 SHEET 1 AA1 5 THR A 57 TYR A 60 0 SHEET 2 AA1 5 GLY A 43 ASP A 51 -1 N ALA A 47 O TYR A 60 SHEET 3 AA1 5 ILE A 260 ARG A 268 -1 O TYR A 265 N GLY A 46 SHEET 4 AA1 5 ALA A 244 TRP A 252 -1 N ALA A 249 O MSE A 262 SHEET 5 AA1 5 THR A 231 ASN A 239 -1 N GLY A 237 O ASN A 246 SHEET 1 AA2 2 PHE A 66 PRO A 67 0 SHEET 2 AA2 2 THR A 181 THR A 182 -1 O THR A 182 N PHE A 66 SHEET 1 AA3 2 VAL A 95 VAL A 96 0 SHEET 2 AA3 2 MSE A 118 THR A 119 -1 O MSE A 118 N VAL A 96 LINK C GLY A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N THR A 119 1555 1555 1.34 LINK C ASN A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N LEU A 139 1555 1555 1.34 LINK C SER A 186 N MSE A 187 1555 1555 1.33 LINK C MSE A 187 N GLY A 188 1555 1555 1.34 LINK C AILE A 261 N MSE A 262 1555 1555 1.34 LINK C BILE A 261 N MSE A 262 1555 1555 1.33 LINK C MSE A 262 N SER A 263 1555 1555 1.33 CISPEP 1 GLU A 167 THR A 168 0 5.11 SITE 1 AC1 4 ARG A 44 GLU A 64 ARG A 65 HOH A 446 SITE 1 AC2 5 ARG A 122 GLU A 125 ALA A 126 THR A 129 SITE 2 AC2 5 ARG A 130 SITE 1 AC3 5 HIS A 106 PRO A 108 ARG A 130 THR A 217 SITE 2 AC3 5 HOH A 442 SITE 1 AC4 6 ASN A 93 ALA A 121 ARG A 207 ACT A 315 SITE 2 AC4 6 ACT A 317 HOH A 454 SITE 1 AC5 6 LYS A 83 LYS A 94 GLU A 102 MSE A 138 SITE 2 AC5 6 LYS A 141 GLN A 142 SITE 1 AC6 6 ARG A 44 ARG A 65 TRP A 173 PRO A 175 SITE 2 AC6 6 ASN A 267 HOH A 409 SITE 1 AC7 10 SER A 62 GLY A 63 VAL A 160 THR A 183 SITE 2 AC7 10 ALA A 185 SER A 186 ARG A 189 ACT A 318 SITE 3 AC7 10 HOH A 500 HOH A 508 SITE 1 AC8 4 VAL A 275 ASP A 276 ASP A 277 LYS A 278 SITE 1 AC9 5 GLY A 144 GLY A 145 TRP A 166 HOH A 420 SITE 2 AC9 5 HOH A 497 SITE 1 AD1 5 THR A 213 ARG A 223 TRP A 230 THR A 231 SITE 2 AD1 5 VAL A 232 SITE 1 AD2 8 SER A 70 SER A 131 LYS A 235 THR A 236 SITE 2 AD2 8 GLY A 237 THR A 238 HOH A 464 HOH A 529 SITE 1 AD3 2 ASP A 164 ARG A 179 SITE 1 AD4 4 GLY A 254 LYS A 255 SER A 256 ALA A 257 SITE 1 AD5 8 ALA A 202 ARG A 203 SER A 240 ALA A 273 SITE 2 AD5 8 ALA A 274 VAL A 275 HOH A 413 HOH A 419 SITE 1 AD6 6 GLY A 90 LEU A 91 LEU A 92 ASN A 93 SITE 2 AD6 6 ACT A 304 HOH A 512 SITE 1 AD7 6 LYS A 94 VAL A 95 HIS A 97 LYS A 115 SITE 2 AD7 6 HOH A 407 HOH A 451 SITE 1 AD8 7 ALA A 121 ARG A 122 GLU A 125 ARG A 207 SITE 2 AD8 7 ACT A 304 HOH A 401 HOH A 411 SITE 1 AD9 8 ARG A 31 THR A 59 TYR A 60 ARG A 61 SITE 2 AD9 8 SER A 62 VAL A 160 ACT A 307 HOH A 508 SITE 1 AE1 6 THR A 217 GLY A 218 ASP A 219 ALA A 220 SITE 2 AE1 6 ARG A 221 ASP A 277 CRYST1 74.845 92.932 85.629 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013361 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010761 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011678 0.00000