HEADER LYASE 05-OCT-15 5E4B TITLE HYDROXYNITRILE LYASE FROM THE FERN DAVALLIA TYERMANII IN COMPLEX WITH TITLE 2 (R)-MANDELONITRILE / BENZALDEHYDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYNITRILE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: GENBANK ASSECCION NUMBER KT804569 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DAVALLIA TYERMANNII; SOURCE 3 ORGANISM_TAXID: 328207; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROXYNITRILE LYASE, FERN, (R)-MANDELONITRILE, BENZALDEHYDE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR T.PAVKOV-KELLER,M.DIEPOLD,K.GRUBER REVDAT 3 10-JAN-24 5E4B 1 REMARK REVDAT 2 23-DEC-20 5E4B 1 JRNL REVDAT 1 05-OCT-16 5E4B 0 JRNL AUTH E.LANFRANCHI,T.PAVKOV-KELLER,E.M.KOEHLER,M.DIEPOLD, JRNL AUTH 2 K.STEINER,B.DARNHOFER,J.HARTLER,T.VAN DEN BERGH,H.J.JOOSTEN, JRNL AUTH 3 M.GRUBER-KHADJAWI,G.G.THALLINGER,R.BIRNER-GRUENBERGER, JRNL AUTH 4 K.GRUBER,M.WINKLER,A.GLIEDER JRNL TITL ENZYME DISCOVERY BEYOND HOMOLOGY: A UNIQUE HYDROXYNITRILE JRNL TITL 2 LYASE IN THE BET V1 SUPERFAMILY. JRNL REF SCI REP V. 7 46738 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28466867 JRNL DOI 10.1038/SREP46738 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 63062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8148 - 4.2600 0.99 2838 150 0.1357 0.1584 REMARK 3 2 4.2600 - 3.3821 1.00 2734 144 0.1281 0.1458 REMARK 3 3 3.3821 - 2.9548 1.00 2690 141 0.1448 0.1796 REMARK 3 4 2.9548 - 2.6848 1.00 2682 142 0.1584 0.1611 REMARK 3 5 2.6848 - 2.4924 1.00 2686 141 0.1519 0.1768 REMARK 3 6 2.4924 - 2.3455 1.00 2694 142 0.1542 0.1637 REMARK 3 7 2.3455 - 2.2280 1.00 2656 139 0.1474 0.1757 REMARK 3 8 2.2280 - 2.1310 1.00 2670 141 0.1425 0.1624 REMARK 3 9 2.1310 - 2.0490 1.00 2663 140 0.1481 0.1874 REMARK 3 10 2.0490 - 1.9783 1.00 2641 139 0.1512 0.1602 REMARK 3 11 1.9783 - 1.9165 1.00 2686 141 0.1522 0.1838 REMARK 3 12 1.9165 - 1.8617 1.00 2654 140 0.1590 0.2129 REMARK 3 13 1.8617 - 1.8127 1.00 2631 139 0.1704 0.2005 REMARK 3 14 1.8127 - 1.7685 1.00 2654 139 0.1792 0.2063 REMARK 3 15 1.7685 - 1.7283 1.00 2637 139 0.1866 0.2217 REMARK 3 16 1.7283 - 1.6915 1.00 2663 140 0.1891 0.2399 REMARK 3 17 1.6915 - 1.6576 1.00 2635 139 0.1920 0.2286 REMARK 3 18 1.6576 - 1.6264 1.00 2638 139 0.1925 0.2064 REMARK 3 19 1.6264 - 1.5973 1.00 2619 138 0.2010 0.2079 REMARK 3 20 1.5973 - 1.5702 0.95 2499 131 0.2228 0.2390 REMARK 3 21 1.5702 - 1.5449 0.91 2411 127 0.2391 0.2408 REMARK 3 22 1.5449 - 1.5211 0.85 2262 120 0.2618 0.2810 REMARK 3 23 1.5211 - 1.4988 0.75 1965 103 0.2906 0.3000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3050 REMARK 3 ANGLE : 1.033 4177 REMARK 3 CHIRALITY : 0.047 461 REMARK 3 PLANARITY : 0.005 538 REMARK 3 DIHEDRAL : 12.514 1075 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E4B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214328. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63070 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 35.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.61100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.860 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5E46 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NATIVE CRYSTALS OF DTHNL1 WERE REMARK 280 OBTAINED BY MIXING 0.5UL 4 MG/ML PROTEIN SAMPLE (IN 10 MM TRIS- REMARK 280 HCL PH 8.0) WITH 1 UL RESERVOIR SOLUTION (0.9 M NANO3; NA2HPO4; REMARK 280 (NH4)2SO4 MIX, 0.1 M TRIS-BICINE BUFFER PH 8.5 AND 30% (W/V) REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 550 & POLYETHYLENE GLYCOL REMARK 280 20K; MORPHEUS CONDITION C9). ADDITIONALLY, NATIVE CRYSTALS WERE REMARK 280 ALSO GROWN BY MIXING 1 UL 4 MG/ML PROTEIN SAMPLE (IN 10 MM TRIS- REMARK 280 HCL PH 8.0) WITH 0.5UL RESERVOIR SOLUTION (0.1 M 2-(4-(2- REMARK 280 HYDROXYETHYL)-1-PIPERAZINYL) ETHANESULFONIC ACID PH 7.5 AND 10% REMARK 280 (W/V) POLYETHYLENE GLYCOL; JSCG CONDITION B4)., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.68100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.06750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.07150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.68100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.06750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.07150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.68100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.06750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.07150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.68100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.06750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.07150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -24 REMARK 465 SER A -23 REMARK 465 TYR A -22 REMARK 465 TYR A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 ASP A -14 REMARK 465 TYR A -13 REMARK 465 ASP A -12 REMARK 465 ILE A -11 REMARK 465 PRO A -10 REMARK 465 THR A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 THR A 4 REMARK 465 GLY A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 ALA A 8 REMARK 465 MET B -24 REMARK 465 SER B -23 REMARK 465 TYR B -22 REMARK 465 TYR B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 ASP B -14 REMARK 465 TYR B -13 REMARK 465 ASP B -12 REMARK 465 ILE B -11 REMARK 465 PRO B -10 REMARK 465 THR B -9 REMARK 465 THR B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 THR B 4 REMARK 465 GLY B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 ALA B 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 368 O HOH A 488 1.96 REMARK 500 O HOH A 301 O HOH B 421 2.03 REMARK 500 O HOH B 487 O HOH B 525 2.04 REMARK 500 O HOH B 514 O HOH B 528 2.07 REMARK 500 O HOH B 446 O HOH B 514 2.11 REMARK 500 O HOH B 392 O HOH B 410 2.11 REMARK 500 OD1 ASP A 184 O HOH A 301 2.11 REMARK 500 O HOH B 316 O HOH B 402 2.12 REMARK 500 O HOH B 413 O HOH B 494 2.13 REMARK 500 OG SER A 146 O HOH A 302 2.15 REMARK 500 O HOH A 301 O HOH A 434 2.15 REMARK 500 O HOH B 416 O HOH B 483 2.15 REMARK 500 O HOH B 316 O HOH B 372 2.16 REMARK 500 O HOH A 365 O HOH A 465 2.16 REMARK 500 O HOH A 301 O HOH A 381 2.17 REMARK 500 O HOH A 402 O HOH B 355 2.17 REMARK 500 O HOH B 387 O HOH B 512 2.17 REMARK 500 O HOH A 313 O HOH A 368 2.17 REMARK 500 O HOH A 301 O HOH A 464 2.17 REMARK 500 O HOH A 465 O HOH B 502 2.18 REMARK 500 O HOH A 405 O HOH A 541 2.18 REMARK 500 O HOH B 316 O HOH B 327 2.19 REMARK 500 O HOH B 447 O HOH B 522 2.19 REMARK 500 O HOH B 465 O HOH B 553 2.19 REMARK 500 O HOH A 321 O HOH B 540 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 435 O HOH B 470 8559 2.14 REMARK 500 O HOH A 302 O HOH B 515 7749 2.18 REMARK 500 O HOH B 308 O HOH B 336 8559 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 43 51.93 -113.54 REMARK 500 TRP A 47 -74.35 -115.36 REMARK 500 ARG B 43 50.45 -116.74 REMARK 500 TRP B 47 -72.70 -111.55 REMARK 500 VAL B 51 -40.24 -130.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 568 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A 569 DISTANCE = 7.83 ANGSTROMS REMARK 525 HOH B 571 DISTANCE = 6.31 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HBX A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MXN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HBX B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MXN B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5E46 RELATED DB: PDB REMARK 900 5E46 CONTAINS THE SAME PROTEIN COMPLEXED DBREF 5E4B A -24 184 PDB 5E4B 5E4B -24 184 DBREF 5E4B B -24 184 PDB 5E4B 5E4B -24 184 SEQRES 1 A 209 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 A 209 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 A 209 ALA GLY THR GLY GLY GLY ALA GLU GLN PHE GLN LEU ARG SEQRES 4 A 209 GLY VAL LEU TRP GLY LYS ALA TYR SER TRP LYS ILE THR SEQRES 5 A 209 GLY THR THR ILE ASP LYS VAL TRP SER ILE VAL GLY ASP SEQRES 6 A 209 TYR VAL ARG VAL ASP ASN TRP VAL SER SER VAL VAL LYS SEQRES 7 A 209 SER SER HIS VAL VAL SER GLY GLU ALA ASN GLN THR GLY SEQRES 8 A 209 CYS VAL ARG ARG PHE VAL CYS TYR PRO ALA SER GLU GLY SEQRES 9 A 209 GLU SER GLU THR VAL ASP TYR SER GLU LEU ILE HIS MET SEQRES 10 A 209 ASN ALA ALA ALA HIS GLN TYR MET TYR MET ILE VAL GLY SEQRES 11 A 209 GLY ASN ILE THR GLY PHE SER LEU MET LYS ASN TYR VAL SEQRES 12 A 209 SER ASN ILE SER LEU SER SER LEU PRO GLU GLU ASP GLY SEQRES 13 A 209 GLY GLY VAL ILE PHE TYR TRP SER PHE THR ALA GLU PRO SEQRES 14 A 209 ALA SER ASN LEU THR GLU GLN LYS CYS ILE GLU ILE VAL SEQRES 15 A 209 PHE PRO LEU TYR THR THR ALA LEU LYS ASP LEU CYS THR SEQRES 16 A 209 HIS LEU SER ILE PRO GLU SER SER VAL THR LEU LEU ASP SEQRES 17 A 209 ASP SEQRES 1 B 209 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 B 209 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 B 209 ALA GLY THR GLY GLY GLY ALA GLU GLN PHE GLN LEU ARG SEQRES 4 B 209 GLY VAL LEU TRP GLY LYS ALA TYR SER TRP LYS ILE THR SEQRES 5 B 209 GLY THR THR ILE ASP LYS VAL TRP SER ILE VAL GLY ASP SEQRES 6 B 209 TYR VAL ARG VAL ASP ASN TRP VAL SER SER VAL VAL LYS SEQRES 7 B 209 SER SER HIS VAL VAL SER GLY GLU ALA ASN GLN THR GLY SEQRES 8 B 209 CYS VAL ARG ARG PHE VAL CYS TYR PRO ALA SER GLU GLY SEQRES 9 B 209 GLU SER GLU THR VAL ASP TYR SER GLU LEU ILE HIS MET SEQRES 10 B 209 ASN ALA ALA ALA HIS GLN TYR MET TYR MET ILE VAL GLY SEQRES 11 B 209 GLY ASN ILE THR GLY PHE SER LEU MET LYS ASN TYR VAL SEQRES 12 B 209 SER ASN ILE SER LEU SER SER LEU PRO GLU GLU ASP GLY SEQRES 13 B 209 GLY GLY VAL ILE PHE TYR TRP SER PHE THR ALA GLU PRO SEQRES 14 B 209 ALA SER ASN LEU THR GLU GLN LYS CYS ILE GLU ILE VAL SEQRES 15 B 209 PHE PRO LEU TYR THR THR ALA LEU LYS ASP LEU CYS THR SEQRES 16 B 209 HIS LEU SER ILE PRO GLU SER SER VAL THR LEU LEU ASP SEQRES 17 B 209 ASP HET HBX A 201 8 HET MXN A 202 10 HET HBX B 201 8 HET MXN B 202 10 HETNAM HBX BENZALDEHYDE HETNAM MXN (2R)-HYDROXY(PHENYL)ETHANENITRILE HETSYN MXN (R)-MANDELONITRILE FORMUL 3 HBX 2(C7 H6 O) FORMUL 4 MXN 2(C8 H7 N O) FORMUL 7 HOH *540(H2 O) HELIX 1 AA1 THR A 30 GLY A 39 1 10 HELIX 2 AA2 ASP A 40 TRP A 47 5 8 HELIX 3 AA3 ALA A 94 ALA A 96 5 3 HELIX 4 AA4 GLY A 110 MET A 114 5 5 HELIX 5 AA5 PRO A 127 GLY A 131 5 5 HELIX 6 AA6 THR A 149 SER A 173 1 25 HELIX 7 AA7 PRO A 175 SER A 177 5 3 HELIX 8 AA8 THR B 30 GLY B 39 1 10 HELIX 9 AA9 ASP B 40 TRP B 47 5 8 HELIX 10 AB1 ALA B 94 ALA B 96 5 3 HELIX 11 AB2 GLY B 110 MET B 114 5 5 HELIX 12 AB3 PRO B 127 GLY B 131 5 5 HELIX 13 AB4 THR B 149 SER B 173 1 25 HELIX 14 AB5 PRO B 175 SER B 177 5 3 SHEET 1 AA1 8 VAL A 52 SER A 59 0 SHEET 2 AA1 8 VAL A 68 CYS A 73 -1 O VAL A 68 N VAL A 58 SHEET 3 AA1 8 THR A 83 ASN A 93 -1 O THR A 83 N CYS A 73 SHEET 4 AA1 8 GLN A 98 GLY A 106 -1 O VAL A 104 N TYR A 86 SHEET 5 AA1 8 LYS A 115 SER A 125 -1 O SER A 119 N TYR A 101 SHEET 6 AA1 8 VAL A 134 GLU A 143 -1 O TYR A 137 N SER A 122 SHEET 7 AA1 8 TRP A 18 ILE A 26 -1 N ILE A 26 O VAL A 134 SHEET 8 AA1 8 VAL A 179 LEU A 181 -1 O THR A 180 N LYS A 25 SHEET 1 AA2 8 VAL B 52 SER B 59 0 SHEET 2 AA2 8 VAL B 68 CYS B 73 -1 O VAL B 68 N VAL B 58 SHEET 3 AA2 8 THR B 83 ASN B 93 -1 O THR B 83 N CYS B 73 SHEET 4 AA2 8 GLN B 98 GLY B 106 -1 O GLN B 98 N ASN B 93 SHEET 5 AA2 8 LYS B 115 SER B 125 -1 O SER B 119 N TYR B 101 SHEET 6 AA2 8 VAL B 134 GLU B 143 -1 O GLU B 143 N LYS B 115 SHEET 7 AA2 8 TRP B 18 ILE B 26 -1 N TRP B 18 O ALA B 142 SHEET 8 AA2 8 VAL B 179 LEU B 181 -1 O THR B 180 N LYS B 25 SITE 1 AC1 4 TYR A 101 TYR A 117 LEU A 160 MXN A 202 SITE 1 AC2 8 ARG A 69 ASP A 85 SER A 87 TYR A 101 SITE 2 AC2 8 ILE A 103 TYR A 117 HBX A 201 HOH A 471 SITE 1 AC3 5 PHE B 71 TYR B 101 TYR B 117 LEU B 160 SITE 2 AC3 5 MXN B 202 SITE 1 AC4 6 ASP B 85 TYR B 101 ILE B 103 TYR B 117 SITE 2 AC4 6 HBX B 201 HOH B 457 CRYST1 73.362 94.135 116.143 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013631 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010623 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008610 0.00000