HEADER LYASE 09-OCT-15 5E68 TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF LUXS - QUORUM SENSOR MOLECULAR TITLE 2 COMPLEX FROM SALMONELLA TYPHI AT 1.58 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-RIBOSYLHOMOCYSTEINE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AI-2 SYNTHESIS PROTEIN,AUTOINDUCER-2 PRODUCTION PROTEIN COMPND 5 LUXS; COMPND 6 EC: 4.4.1.21; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHI; SOURCE 3 ORGANISM_TAXID: 90370; SOURCE 4 GENE: LUXS, STY2943, T2714; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30B(+) KEYWDS QUROUM SENSING PROTEIN, LUXS, SALMONELLA TYPHI, S-RIBOSYLHOMOCYSTEINE KEYWDS 2 LYASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR P.PERUMAL,R.RAINA,A.AROCKIASAMY,N.SUNDARABAALAJI REVDAT 3 08-NOV-23 5E68 1 REMARK REVDAT 2 29-JUL-20 5E68 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 12-OCT-16 5E68 0 JRNL AUTH P.PERUMAL,R.RAINA,A.AROCKIASAMY,N.SUNDARABAALAJI JRNL TITL HIGH RESOLUTION CRYSTAL STRUCTURE OF LUXS - QUORUM SENSOR JRNL TITL 2 MOLECULAR COMPLEX FROM SALMONELLA TYPHI AT 1.58 ANGSTROMS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 42158 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2234 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2865 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2622 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 227 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.91000 REMARK 3 B22 (A**2) : 1.71000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.570 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2699 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2543 ; 0.010 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3654 ; 2.181 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5840 ; 1.393 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 339 ; 6.484 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;37.561 ;24.959 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 455 ;11.815 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.144 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 419 ; 0.160 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3057 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 594 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1358 ; 2.364 ; 2.032 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1357 ; 2.350 ; 2.031 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1692 ; 3.189 ; 3.034 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1693 ; 3.189 ; 3.036 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1341 ; 3.490 ; 2.358 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1340 ; 3.487 ; 2.358 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1960 ; 4.966 ; 3.423 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3125 ; 6.631 ;17.271 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3030 ; 6.578 ;16.864 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 168 B 3 168 9535 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5E68 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214101. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59402 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.31 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 1JOE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, BIS-TRISPROPANE, REMARK 280 PEG3350, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.21350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 HIS A 170 REMARK 465 ILE A 171 REMARK 465 LEU A 172 REMARK 465 GLU A 173 REMARK 465 HIS A 174 REMARK 465 HIS A 175 REMARK 465 HIS A 176 REMARK 465 HIS A 177 REMARK 465 HIS A 178 REMARK 465 HIS A 179 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 HIS B 175 REMARK 465 HIS B 176 REMARK 465 HIS B 177 REMARK 465 HIS B 178 REMARK 465 HIS B 179 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 45 CD CE NZ REMARK 470 GLN A 132 CG CD OE1 NE2 REMARK 470 ARG A 144 NH2 REMARK 470 ARG A 149 NE CZ NH1 NH2 REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 ASP B 5 CG OD1 OD2 REMARK 470 ARG B 13 NH2 REMARK 470 GLN B 15 CD REMARK 470 LYS B 45 CD CE NZ REMARK 470 LYS B 51 NZ REMARK 470 ARG B 65 NH1 REMARK 470 ASP B 116 OD1 OD2 REMARK 470 ARG B 149 NE CZ NH2 REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 LYS B 163 O CG CD CE NZ REMARK 470 GLN B 167 CG CD OE1 NE2 REMARK 470 HIS B 170 CG ND1 CD2 CE1 NE2 REMARK 470 ILE B 171 CG1 CG2 CD1 REMARK 470 HIS B 174 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 41 CB CYS A 41 SG -0.110 REMARK 500 CYS B 41 CB CYS B 41 SG -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 10 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 13 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 39 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 MET A 64 CG - SD - CE ANGL. DEV. = 9.7 DEGREES REMARK 500 LEU B 3 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 ARG B 39 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 MET B 64 CG - SD - CE ANGL. DEV. = 12.0 DEGREES REMARK 500 ASP B 96 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 MET B 133 CG - SD - CE ANGL. DEV. = -11.4 DEGREES REMARK 500 ARG B 144 NE - CZ - NH1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG B 144 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 94 57.66 -140.59 REMARK 500 ASP A 150 173.81 69.99 REMARK 500 ASP B 150 173.39 67.06 REMARK 500 ILE B 171 41.43 -91.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 54 NE2 REMARK 620 2 HIS A 58 NE2 100.6 REMARK 620 3 CYS A 128 SG 103.5 113.5 REMARK 620 4 HOH A 404 O 121.0 105.3 112.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 407 O REMARK 620 2 HIS B 54 NE2 119.5 REMARK 620 3 HIS B 58 NE2 110.9 100.1 REMARK 620 4 CYS B 128 SG 109.7 104.3 112.1 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JOE RELATED DB: PDB REMARK 900 HOMOLOGUE FROM HEAMOPHILUS INFLUENZAE DBREF 5E68 A 1 171 UNP Q8Z4D7 LUXS_SALTI 1 171 DBREF 5E68 B 1 171 UNP Q8Z4D7 LUXS_SALTI 1 171 SEQADV 5E68 THR A 21 UNP Q8Z4D7 GLY 21 ENGINEERED MUTATION SEQADV 5E68 LEU A 172 UNP Q8Z4D7 EXPRESSION TAG SEQADV 5E68 GLU A 173 UNP Q8Z4D7 EXPRESSION TAG SEQADV 5E68 HIS A 174 UNP Q8Z4D7 EXPRESSION TAG SEQADV 5E68 HIS A 175 UNP Q8Z4D7 EXPRESSION TAG SEQADV 5E68 HIS A 176 UNP Q8Z4D7 EXPRESSION TAG SEQADV 5E68 HIS A 177 UNP Q8Z4D7 EXPRESSION TAG SEQADV 5E68 HIS A 178 UNP Q8Z4D7 EXPRESSION TAG SEQADV 5E68 HIS A 179 UNP Q8Z4D7 EXPRESSION TAG SEQADV 5E68 THR B 21 UNP Q8Z4D7 GLY 21 ENGINEERED MUTATION SEQADV 5E68 LEU B 172 UNP Q8Z4D7 EXPRESSION TAG SEQADV 5E68 GLU B 173 UNP Q8Z4D7 EXPRESSION TAG SEQADV 5E68 HIS B 174 UNP Q8Z4D7 EXPRESSION TAG SEQADV 5E68 HIS B 175 UNP Q8Z4D7 EXPRESSION TAG SEQADV 5E68 HIS B 176 UNP Q8Z4D7 EXPRESSION TAG SEQADV 5E68 HIS B 177 UNP Q8Z4D7 EXPRESSION TAG SEQADV 5E68 HIS B 178 UNP Q8Z4D7 EXPRESSION TAG SEQADV 5E68 HIS B 179 UNP Q8Z4D7 EXPRESSION TAG SEQRES 1 A 179 MET PRO LEU LEU ASP SER PHE ALA VAL ASP HIS THR ARG SEQRES 2 A 179 MET GLN ALA PRO ALA VAL ARG THR ALA LYS THR MET ASN SEQRES 3 A 179 THR PRO HIS GLY ASP ALA ILE THR VAL PHE ASP LEU ARG SEQRES 4 A 179 PHE CYS ILE PRO ASN LYS GLU VAL MET PRO GLU LYS GLY SEQRES 5 A 179 ILE HIS THR LEU GLU HIS LEU PHE ALA GLY PHE MET ARG SEQRES 6 A 179 ASP HIS LEU ASN GLY ASN GLY VAL GLU ILE ILE ASP ILE SEQRES 7 A 179 SER PRO MET GLY CSD ARG THR GLY PHE TYR MET SER LEU SEQRES 8 A 179 ILE GLY THR PRO ASP GLU GLN ARG VAL ALA ASP ALA TRP SEQRES 9 A 179 LYS ALA ALA MET ALA ASP VAL LEU LYS VAL GLN ASP GLN SEQRES 10 A 179 ASN GLN ILE PRO GLU LEU ASN VAL TYR GLN CYS GLY THR SEQRES 11 A 179 TYR GLN MET HIS SER LEU SER GLU ALA GLN ASP ILE ALA SEQRES 12 A 179 ARG HIS ILE LEU GLU ARG ASP VAL ARG VAL ASN SER ASN SEQRES 13 A 179 LYS GLU LEU ALA LEU PRO LYS GLU LYS LEU GLN GLU LEU SEQRES 14 A 179 HIS ILE LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 179 MET PRO LEU LEU ASP SER PHE ALA VAL ASP HIS THR ARG SEQRES 2 B 179 MET GLN ALA PRO ALA VAL ARG THR ALA LYS THR MET ASN SEQRES 3 B 179 THR PRO HIS GLY ASP ALA ILE THR VAL PHE ASP LEU ARG SEQRES 4 B 179 PHE CYS ILE PRO ASN LYS GLU VAL MET PRO GLU LYS GLY SEQRES 5 B 179 ILE HIS THR LEU GLU HIS LEU PHE ALA GLY PHE MET ARG SEQRES 6 B 179 ASP HIS LEU ASN GLY ASN GLY VAL GLU ILE ILE ASP ILE SEQRES 7 B 179 SER PRO MET GLY CSD ARG THR GLY PHE TYR MET SER LEU SEQRES 8 B 179 ILE GLY THR PRO ASP GLU GLN ARG VAL ALA ASP ALA TRP SEQRES 9 B 179 LYS ALA ALA MET ALA ASP VAL LEU LYS VAL GLN ASP GLN SEQRES 10 B 179 ASN GLN ILE PRO GLU LEU ASN VAL TYR GLN CYS GLY THR SEQRES 11 B 179 TYR GLN MET HIS SER LEU SER GLU ALA GLN ASP ILE ALA SEQRES 12 B 179 ARG HIS ILE LEU GLU ARG ASP VAL ARG VAL ASN SER ASN SEQRES 13 B 179 LYS GLU LEU ALA LEU PRO LYS GLU LYS LEU GLN GLU LEU SEQRES 14 B 179 HIS ILE LEU GLU HIS HIS HIS HIS HIS HIS MODRES 5E68 CSD A 83 CYS MODIFIED RESIDUE MODRES 5E68 CSD B 83 CYS MODIFIED RESIDUE HET CSD A 83 8 HET CSD B 83 8 HET ZN A 201 1 HET PAV A 202 10 HET ZN B 201 1 HET MET B 202 9 HETNAM CSD 3-SULFINOALANINE HETNAM ZN ZINC ION HETNAM PAV (2R,4S)-2-METHYL-2,3,3,4-TETRAHYDROXYTETRAHYDROFURAN HETNAM MET METHIONINE HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE FORMUL 1 CSD 2(C3 H7 N O4 S) FORMUL 3 ZN 2(ZN 2+) FORMUL 4 PAV C5 H10 O5 FORMUL 6 MET C5 H11 N O2 S FORMUL 7 HOH *227(H2 O) HELIX 1 AA1 PRO A 49 ASN A 69 1 21 HELIX 2 AA2 ASP A 96 LYS A 113 1 18 HELIX 3 AA3 ASP A 116 ILE A 120 5 5 HELIX 4 AA4 SER A 135 ASP A 150 1 16 HELIX 5 AA5 SER A 155 ALA A 160 1 6 HELIX 6 AA6 PRO A 162 LEU A 169 1 8 HELIX 7 AA7 PRO B 49 ASN B 69 1 21 HELIX 8 AA8 ASP B 96 LYS B 113 1 18 HELIX 9 AA9 ASP B 116 ILE B 120 5 5 HELIX 10 AB1 SER B 135 ASP B 150 1 16 HELIX 11 AB2 SER B 155 ALA B 160 1 6 HELIX 12 AB3 GLU B 164 ILE B 171 1 8 SHEET 1 AA1 5 GLU A 74 PRO A 80 0 SHEET 2 AA1 5 GLY A 86 ILE A 92 -1 O ILE A 92 N GLU A 74 SHEET 3 AA1 5 ALA A 32 ARG A 39 -1 N PHE A 36 O MET A 89 SHEET 4 AA1 5 ALA A 18 ASN A 26 -1 N MET A 25 O ILE A 33 SHEET 5 AA1 5 ARG A 152 VAL A 153 1 O ARG A 152 N VAL A 19 SHEET 1 AA2 5 ASP B 5 SER B 6 0 SHEET 2 AA2 5 ALA B 18 ASN B 26 -1 O THR B 24 N ASP B 5 SHEET 3 AA2 5 ALA B 32 ARG B 39 -1 O ARG B 39 N ALA B 18 SHEET 4 AA2 5 GLY B 86 ILE B 92 -1 O MET B 89 N PHE B 36 SHEET 5 AA2 5 GLU B 74 PRO B 80 -1 N GLU B 74 O ILE B 92 SHEET 1 AA3 3 ASP B 5 SER B 6 0 SHEET 2 AA3 3 ALA B 18 ASN B 26 -1 O THR B 24 N ASP B 5 SHEET 3 AA3 3 ARG B 152 VAL B 153 1 O ARG B 152 N VAL B 19 LINK C GLY A 82 N CSD A 83 1555 1555 1.32 LINK C CSD A 83 N ARG A 84 1555 1555 1.35 LINK C GLY B 82 N CSD B 83 1555 1555 1.33 LINK C CSD B 83 N ARG B 84 1555 1555 1.33 LINK NE2 HIS A 54 ZN ZN A 201 1555 1555 2.06 LINK NE2 HIS A 58 ZN ZN A 201 1555 1555 2.10 LINK SG CYS A 128 ZN ZN A 201 1555 1555 2.29 LINK ZN ZN A 201 O HOH A 404 1555 1555 2.00 LINK O HOH A 407 ZN ZN B 201 1555 1555 2.07 LINK NE2 HIS B 54 ZN ZN B 201 1555 1555 2.08 LINK NE2 HIS B 58 ZN ZN B 201 1555 1555 2.09 LINK SG CYS B 128 ZN ZN B 201 1555 1555 2.28 CISPEP 1 ALA A 16 PRO A 17 0 -9.09 CISPEP 2 ALA B 16 PRO B 17 0 -11.94 CRYST1 48.345 66.427 54.310 90.00 106.17 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020685 0.000000 0.005999 0.00000 SCALE2 0.000000 0.015054 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019172 0.00000