HEADER CELL ADHESION 10-OCT-15 5E6W TITLE RE-REFINEMENT OF THE CRYSTAL STRUCTURE OF THE PLEXIN-SEMAPHORIN- TITLE 2 INTEGRIN DOMAIN/HYBRID DOMAIN/I-EGF1 SEGMENT FROM THE HUMAN INTEGRIN TITLE 3 B2 SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN BETA-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 23-122, 362-574; COMPND 5 SYNONYM: CELL SURFACE ADHESION GLYCOPROTEINS LFA-1/CR3/P150,95 COMPND 6 SUBUNIT BETA,COMPLEMENT RECEPTOR C3 SUBUNIT BETA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ITGB2, CD18, MFI7; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS CD18 FRAGMENT, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR T.A.SPRINGER,M.SEN REVDAT 8 27-SEP-23 5E6W 1 HETSYN REVDAT 7 29-JUL-20 5E6W 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE REVDAT 6 04-DEC-19 5E6W 1 REMARK REVDAT 5 27-SEP-17 5E6W 1 REMARK REVDAT 4 15-MAR-17 5E6W 1 JRNL REMARK REVDAT 3 11-MAY-16 5E6W 1 JRNL REVDAT 2 16-MAR-16 5E6W 1 JRNL REVDAT 1 02-MAR-16 5E6W 0 JRNL AUTH M.SEN,T.A.SPRINGER JRNL TITL LEUKOCYTE INTEGRIN ALPHA L BETA 2 HEADPIECE STRUCTURES: THE JRNL TITL 2 ALPHA I DOMAIN, THE POCKET FOR THE INTERNAL LIGAND, AND JRNL TITL 3 CONCERTED MOVEMENTS OF ITS LOOPS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 2940 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 26936951 JRNL DOI 10.1073/PNAS.1601379113 REMARK 0 REMARK 0 THIS ENTRY 5E6W REFLECTS AN ALTERNATIVE MODELING OF THE REMARK 0 STRUCTURAL DATA IN R2P28SF ORIGINAL DATA DETERMINED BY AUTHORS: REMARK 0 SHI, M., FOO, S.Y., TAN, S.M., MITCHELL, E.P., LAW, S.K.A., REMARK 0 LESCAR, J. REMARK 0 ORIGINAL DATA REFERENCE 1 REMARK 0 PDB ID: 2p28 REMARK 0 AUTH M.SHI,S.Y.FOO,S.M.TAN,E.P.MITCHELL,S.K.LAW,J.LESCAR REMARK 0 TITL A STRUCTURAL HYPOTHESIS FOR THE TRANSITION BETWEEN BENT AND REMARK 0 TITL 2 EXTENDED CONFORMATIONS OF THE LEUKOCYTE BETA2 INTEGRINS. REMARK 0 REF J. BIOL. CHEM. V. 282 30198 2007 REMARK 0 REFN ISSN 0021-9258 REMARK 0 PMID 17673459 REMARK 0 DOI 10.1074/JBC.M701670200 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 18723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.9727 - 4.2029 0.97 2773 137 0.2179 0.2312 REMARK 3 2 4.2029 - 3.3385 0.99 2593 126 0.2026 0.2449 REMARK 3 3 3.3385 - 2.9172 1.00 2520 135 0.2352 0.2914 REMARK 3 4 2.9172 - 2.6508 1.00 2506 139 0.2498 0.3217 REMARK 3 5 2.6508 - 2.4610 1.00 2491 149 0.2614 0.3392 REMARK 3 6 2.4610 - 2.3160 1.00 2450 146 0.2697 0.3332 REMARK 3 7 2.3160 - 2.2001 0.99 2426 132 0.2784 0.3382 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2458 REMARK 3 ANGLE : 0.856 3330 REMARK 3 CHIRALITY : 0.048 363 REMARK 3 PLANARITY : 0.004 442 REMARK 3 DIHEDRAL : 14.738 1529 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 460 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3673 20.0361 13.4712 REMARK 3 T TENSOR REMARK 3 T11: 0.3498 T22: 0.1682 REMARK 3 T33: 0.2584 T12: 0.0234 REMARK 3 T13: -0.0627 T23: -0.0738 REMARK 3 L TENSOR REMARK 3 L11: 2.4309 L22: 1.6992 REMARK 3 L33: 1.6265 L12: -0.0981 REMARK 3 L13: -1.3013 L23: 1.6733 REMARK 3 S TENSOR REMARK 3 S11: 0.0665 S12: 0.0435 S13: 0.0152 REMARK 3 S21: 0.3741 S22: 0.0385 S23: -0.0647 REMARK 3 S31: 0.5878 S32: -0.0346 S33: 0.0511 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 461 THROUGH 556 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0317 44.3416 67.4889 REMARK 3 T TENSOR REMARK 3 T11: 0.3220 T22: 0.4059 REMARK 3 T33: 0.4899 T12: -0.1121 REMARK 3 T13: 0.0073 T23: -0.0888 REMARK 3 L TENSOR REMARK 3 L11: 1.5617 L22: 1.3591 REMARK 3 L33: 0.6630 L12: 0.8064 REMARK 3 L13: -1.1230 L23: -0.9839 REMARK 3 S TENSOR REMARK 3 S11: 0.2594 S12: -0.1597 S13: 0.0870 REMARK 3 S21: 0.1559 S22: -0.0994 S23: -0.0241 REMARK 3 S31: -0.2233 S32: 0.0898 S33: -0.0991 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214453. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1YUK REMARK 200 REMARK 200 REMARK: AUTHOR USED THE SF DATA FROM ENTRY 2P28 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 282.61600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 141.30800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 211.96200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.65400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 353.27000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 282.61600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 141.30800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 70.65400 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 211.96200 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 353.27000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 69 REMARK 465 ASN A 70 REMARK 465 GLY A 71 REMARK 465 GLY A 72 REMARK 465 ASP A 433 REMARK 465 ARG A 434 REMARK 465 SER A 467 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 466 CG CD NE CZ NH1 NH2 REMARK 470 SER A 468 OG REMARK 470 GLN A 469 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1110 O HOH A 1162 2.17 REMARK 500 O HOH A 1144 O HOH A 1159 2.17 REMARK 500 O7 NAG A 901 O HOH A 1001 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1133 O HOH A 1162 8665 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 6 133.22 160.31 REMARK 500 LYS A 7 -23.14 113.21 REMARK 500 ASN A 28 30.99 -84.33 REMARK 500 ASP A 58 74.08 -158.68 REMARK 500 GLN A 469 -8.01 80.04 REMARK 500 HIS A 554 67.39 -67.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 435 LEU A 436 -144.69 REMARK 500 GLN A 469 GLU A 470 146.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1185 DISTANCE = 6.11 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2P28 RELATED DB: PDB REMARK 900 THIS ENTRY 5E6W REFLECTS AN ALTERNATIVE MODELING OF X-RAY DATA REMARK 900 R2P28SF DBREF 5E6W A 1 100 UNP P05107 ITB2_HUMAN 23 122 DBREF 5E6W A 101 552 UNP P05107 ITB2_HUMAN 362 574 SEQADV 5E6W PHE A 97 UNP P05107 PHE 119 LINKER SEQADV 5E6W ARG A 98 UNP P05107 ARG 120 LINKER SEQADV 5E6W ARG A 99 UNP P05107 ARG 121 LINKER SEQADV 5E6W ALA A 100 UNP P05107 ALA 122 LINKER SEQADV 5E6W HIS A 553 UNP P05107 EXPRESSION TAG SEQADV 5E6W HIS A 554 UNP P05107 EXPRESSION TAG SEQADV 5E6W HIS A 555 UNP P05107 EXPRESSION TAG SEQADV 5E6W HIS A 556 UNP P05107 EXPRESSION TAG SEQRES 1 A 317 GLN GLU CYS THR LYS PHE LYS VAL SER SER CYS ARG GLU SEQRES 2 A 317 CYS ILE GLU SER GLY PRO GLY CYS THR TRP CYS GLN LYS SEQRES 3 A 317 LEU ASN PHE THR GLY PRO GLY ASP PRO ASP SER ILE ARG SEQRES 4 A 317 CYS ASP THR ARG PRO GLN LEU LEU MET ARG GLY CYS ALA SEQRES 5 A 317 ALA ASP ASP ILE MET ASP PRO THR SER LEU ALA GLU THR SEQRES 6 A 317 GLN GLU ASP HIS ASN GLY GLY GLN LYS GLN LEU SER PRO SEQRES 7 A 317 GLN LYS VAL THR LEU TYR LEU ARG PRO GLY GLN ALA ALA SEQRES 8 A 317 ALA PHE ASN VAL THR PHE ARG ARG ALA LYS LEU SER SER SEQRES 9 A 317 ARG VAL PHE LEU ASP HIS ASN ALA LEU PRO ASP THR LEU SEQRES 10 A 317 LYS VAL THR TYR ASP SER PHE CYS SER ASN GLY VAL THR SEQRES 11 A 317 HIS ARG ASN GLN PRO ARG GLY ASP CYS ASP GLY VAL GLN SEQRES 12 A 317 ILE ASN VAL PRO ILE THR PHE GLN VAL LYS VAL THR ALA SEQRES 13 A 317 THR GLU CYS ILE GLN GLU GLN SER PHE VAL ILE ARG ALA SEQRES 14 A 317 LEU GLY PHE THR ASP ILE VAL THR VAL GLN VAL LEU PRO SEQRES 15 A 317 GLN CYS GLU CYS ARG CYS ARG ASP GLN SER ARG ASP ARG SEQRES 16 A 317 SER LEU CYS HIS GLY LYS GLY PHE LEU GLU CYS GLY ILE SEQRES 17 A 317 CYS ARG CYS ASP THR GLY TYR ILE GLY LYS ASN CYS GLU SEQRES 18 A 317 CYS GLN THR GLN GLY ARG SER SER GLN GLU LEU GLU GLY SEQRES 19 A 317 SER CYS ARG LYS ASP ASN ASN SER ILE ILE CYS SER GLY SEQRES 20 A 317 LEU GLY ASP CYS VAL CYS GLY GLN CYS LEU CYS HIS THR SEQRES 21 A 317 SER ASP VAL PRO GLY LYS LEU ILE TYR GLY GLN TYR CYS SEQRES 22 A 317 GLU CYS ASP THR ILE ASN CYS GLU ARG TYR ASN GLY GLN SEQRES 23 A 317 VAL CYS GLY GLY PRO GLY ARG GLY LEU CYS PHE CYS GLY SEQRES 24 A 317 LYS CYS ARG CYS HIS PRO GLY PHE GLU GLY SER ALA CYS SEQRES 25 A 317 GLN HIS HIS HIS HIS HET NAG A 901 14 HET NAG A 902 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 4 HOH *185(H2 O) HELIX 1 AA1 SER A 10 GLY A 18 1 9 HELIX 2 AA2 LYS A 26 THR A 30 5 5 HELIX 3 AA3 PRO A 35 ILE A 38 5 4 HELIX 4 AA4 THR A 42 ARG A 49 1 8 HELIX 5 AA5 ALA A 52 ASP A 54 5 3 HELIX 6 AA6 GLU A 472 ARG A 476 5 5 HELIX 7 AA7 ILE A 482 GLY A 486 5 5 SHEET 1 AA1 3 CYS A 40 ASP A 41 0 SHEET 2 AA1 3 THR A 22 CYS A 24 -1 N THR A 22 O ASP A 41 SHEET 3 AA1 3 ILE A 56 MET A 57 -1 O MET A 57 N TRP A 23 SHEET 1 AA2 6 LEU A 62 GLN A 66 0 SHEET 2 AA2 6 LYS A 80 LEU A 85 -1 O THR A 82 N GLU A 64 SHEET 3 AA2 6 ILE A 414 PRO A 421 1 O LEU A 420 N LEU A 83 SHEET 4 AA2 6 GLN A 402 ALA A 408 -1 N PHE A 404 O VAL A 417 SHEET 5 AA2 6 SER A 103 HIS A 349 -1 N ASP A 348 O ARG A 407 SHEET 6 AA2 6 GLY A 376 VAL A 381 -1 O GLY A 376 N LEU A 347 SHEET 1 AA3 5 LEU A 76 SER A 77 0 SHEET 2 AA3 5 ALA A 91 PHE A 97 -1 O THR A 96 N SER A 77 SHEET 3 AA3 5 ILE A 387 ALA A 395 -1 O VAL A 391 N PHE A 93 SHEET 4 AA3 5 LEU A 356 PHE A 363 -1 N PHE A 363 O THR A 388 SHEET 5 AA3 5 THR A 369 GLN A 373 -1 O HIS A 370 N SER A 362 SHEET 1 AA4 2 GLY A 441 GLU A 444 0 SHEET 2 AA4 2 ILE A 447 CYS A 450 -1 O ILE A 447 N GLU A 444 SHEET 1 AA5 2 TYR A 454 ILE A 455 0 SHEET 2 AA5 2 CYS A 461 GLN A 462 -1 O CYS A 461 N ILE A 455 SHEET 1 AA6 2 GLY A 488 VAL A 491 0 SHEET 2 AA6 2 GLN A 494 CYS A 497 -1 O GLN A 494 N VAL A 491 SHEET 1 AA7 2 ARG A 521 TYR A 522 0 SHEET 2 AA7 2 GLN A 525 VAL A 526 -1 O GLN A 525 N TYR A 522 SHEET 1 AA8 2 GLY A 533 PHE A 536 0 SHEET 2 AA8 2 LYS A 539 CYS A 542 -1 O ARG A 541 N LEU A 534 SSBOND 1 CYS A 3 CYS A 21 1555 1555 2.03 SSBOND 2 CYS A 11 CYS A 425 1555 1555 2.03 SSBOND 3 CYS A 14 CYS A 40 1555 1555 2.03 SSBOND 4 CYS A 24 CYS A 51 1555 1555 2.03 SSBOND 5 CYS A 364 CYS A 378 1555 1555 2.03 SSBOND 6 CYS A 398 CYS A 423 1555 1555 2.03 SSBOND 7 CYS A 427 CYS A 445 1555 1555 2.03 SSBOND 8 CYS A 437 CYS A 448 1555 1555 2.04 SSBOND 9 CYS A 450 CYS A 459 1555 1555 2.03 SSBOND 10 CYS A 461 CYS A 492 1555 1555 2.03 SSBOND 11 CYS A 475 CYS A 490 1555 1555 2.03 SSBOND 12 CYS A 484 CYS A 495 1555 1555 2.04 SSBOND 13 CYS A 497 CYS A 512 1555 1555 2.04 SSBOND 14 CYS A 514 CYS A 537 1555 1555 2.04 SSBOND 15 CYS A 519 CYS A 535 1555 1555 2.03 SSBOND 16 CYS A 527 CYS A 540 1555 1555 2.03 SSBOND 17 CYS A 542 CYS A 551 1555 1555 2.03 LINK ND2 ASN A 28 C1 NAG A 902 1555 1555 1.44 LINK ND2 ASN A 94 C1 NAG A 901 1555 1555 1.43 CISPEP 1 SER A 77 PRO A 78 0 -0.14 CRYST1 52.260 52.260 423.924 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019135 0.011048 0.000000 0.00000 SCALE2 0.000000 0.022095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002359 0.00000