HEADER CELL ADHESION 10-OCT-15 5E6X TITLE RE-REFINEMENT OF THE CRYSTAL STRUCTURE OF THE PLEXIN-SEMAPHORIN- TITLE 2 INTEGRIN DOMAIN/HYBRID DOMAIN/I-EGF1 SEGMENT FROM THE HUMAN INTEGRIN TITLE 3 B2 SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN BETA-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 23-122 AND 362 535; COMPND 5 SYNONYM: CELL SURFACE ADHESION GLYCOPROTEINS LFA-1/CR3/P150,95 COMPND 6 SUBUNIT BETA,COMPLEMENT RECEPTOR C3 SUBUNIT BETA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ITGB2, CD18, MFI7; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS CD18 FRAGMENT, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR T.A.SPRINGER,M.SEN REVDAT 9 27-SEP-23 5E6X 1 HETSYN REVDAT 8 29-JUL-20 5E6X 1 COMPND REMARK HETNAM LINK REVDAT 8 2 1 SITE REVDAT 7 04-DEC-19 5E6X 1 REMARK REVDAT 6 27-SEP-17 5E6X 1 REMARK REVDAT 5 15-MAR-17 5E6X 1 JRNL REMARK REVDAT 4 20-JUL-16 5E6X 1 REMARK REVDAT 3 11-MAY-16 5E6X 1 JRNL REVDAT 2 16-MAR-16 5E6X 1 JRNL REVDAT 1 02-MAR-16 5E6X 0 JRNL AUTH M.SEN,T.A.SPRINGER JRNL TITL LEUKOCYTE INTEGRIN ALPHA L BETA 2 HEADPIECE STRUCTURES: THE JRNL TITL 2 ALPHA I DOMAIN, THE POCKET FOR THE INTERNAL LIGAND, AND JRNL TITL 3 CONCERTED MOVEMENTS OF ITS LOOPS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 2940 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 26936951 JRNL DOI 10.1073/PNAS.1601379113 REMARK 0 REMARK 0 THIS ENTRY 5E6X REFLECTS AN ALTERNATIVE MODELING OF THE REMARK 0 STRUCTURAL DATA IN R2P26SF ORIGINAL DATA DETERMINED BY AUTHOR: REMARK 0 SHI, M., FOO, S.Y., TAN, S.M., MITCHELL, E.P., LAW, S.K.A., REMARK 0 LESCAR, J. REMARK 0 ORIGINAL DATA REFERENCE 1 REMARK 0 PDB ID: 2p26 REMARK 0 AUTH M.SHI,S.Y.FOO,S.M.TAN,E.P.MITCHELL,S.K.LAW,J.LESCAR REMARK 0 TITL A STRUCTURAL HYPOTHESIS FOR THE TRANSITION BETWEEN BENT AND REMARK 0 TITL 2 EXTENDED CONFORMATIONS OF THE LEUKOCYTE BETA2 INTEGRINS. REMARK 0 REF J. BIOL. CHEM. V. 282 30198 2007 REMARK 0 REFN ISSN 0021-9258 REMARK 0 PMID 17673459 REMARK 0 DOI 10.1074/JBC.M701670200 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 21812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.8737 - 3.4981 1.00 2923 180 0.1627 0.2129 REMARK 3 2 3.4981 - 2.7774 1.00 2844 164 0.1881 0.2591 REMARK 3 3 2.7774 - 2.4265 1.00 2816 161 0.2176 0.2635 REMARK 3 4 2.4265 - 2.2048 1.00 2813 154 0.2114 0.2246 REMARK 3 5 2.2048 - 2.0468 1.00 2820 144 0.2194 0.2652 REMARK 3 6 2.0468 - 1.9261 0.99 2792 141 0.2253 0.2682 REMARK 3 7 1.9261 - 1.8297 0.78 2168 110 0.2705 0.3367 REMARK 3 8 1.8297 - 1.7501 0.53 1520 62 0.3288 0.4404 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2320 REMARK 3 ANGLE : 0.725 3129 REMARK 3 CHIRALITY : 0.052 343 REMARK 3 PLANARITY : 0.002 422 REMARK 3 DIHEDRAL : 11.524 876 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9977 -7.3953 -32.8185 REMARK 3 T TENSOR REMARK 3 T11: 0.1292 T22: 0.1057 REMARK 3 T33: 0.1421 T12: 0.0123 REMARK 3 T13: 0.0046 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.9106 L22: 1.0506 REMARK 3 L33: 0.5025 L12: 0.2806 REMARK 3 L13: -0.3768 L23: -0.2256 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: -0.0132 S13: -0.0861 REMARK 3 S21: 0.0394 S22: 0.0386 S23: 0.0097 REMARK 3 S31: -0.0761 S32: -0.1135 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1629 -16.1358 -15.7239 REMARK 3 T TENSOR REMARK 3 T11: 0.2074 T22: 0.1913 REMARK 3 T33: 0.2683 T12: -0.0032 REMARK 3 T13: -0.0643 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 0.3002 L22: 0.3171 REMARK 3 L33: 0.5501 L12: 0.2544 REMARK 3 L13: -0.0788 L23: 0.1926 REMARK 3 S TENSOR REMARK 3 S11: 0.2592 S12: -0.0904 S13: -0.3310 REMARK 3 S21: 0.0450 S22: -0.0644 S23: -0.1537 REMARK 3 S31: 0.3304 S32: 0.1809 S33: 0.0029 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 344 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0200 -8.7908 -11.1255 REMARK 3 T TENSOR REMARK 3 T11: 0.1758 T22: 0.1646 REMARK 3 T33: 0.1216 T12: -0.0290 REMARK 3 T13: -0.0301 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.5763 L22: 0.5885 REMARK 3 L33: 0.3034 L12: -0.3507 REMARK 3 L13: -0.2270 L23: -0.1570 REMARK 3 S TENSOR REMARK 3 S11: 0.0389 S12: -0.2546 S13: -0.1043 REMARK 3 S21: 0.3105 S22: 0.0445 S23: 0.1451 REMARK 3 S31: -0.0610 S32: 0.2203 S33: -0.0199 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 345 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7744 -3.7199 -11.7936 REMARK 3 T TENSOR REMARK 3 T11: 0.1704 T22: 0.1997 REMARK 3 T33: 0.1669 T12: -0.0095 REMARK 3 T13: 0.0147 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 1.2849 L22: 0.3360 REMARK 3 L33: 0.3646 L12: -0.1270 REMARK 3 L13: 0.0856 L23: -0.3343 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: -0.1980 S13: 0.1565 REMARK 3 S21: 0.0833 S22: 0.0623 S23: 0.0185 REMARK 3 S31: -0.1595 S32: 0.0667 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 422 THROUGH 435 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7849 -19.7209 -39.5005 REMARK 3 T TENSOR REMARK 3 T11: 0.2493 T22: 0.1962 REMARK 3 T33: 0.2679 T12: -0.0103 REMARK 3 T13: -0.0013 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 0.0858 L22: 0.0442 REMARK 3 L33: 0.2484 L12: -0.0033 REMARK 3 L13: -0.0028 L23: 0.0024 REMARK 3 S TENSOR REMARK 3 S11: 0.0873 S12: -0.1696 S13: -0.0679 REMARK 3 S21: 0.0854 S22: -0.0180 S23: -0.1856 REMARK 3 S31: 0.2810 S32: 0.0765 S33: -0.0020 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 436 THROUGH 473 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3802 -11.5783 -53.9363 REMARK 3 T TENSOR REMARK 3 T11: 0.1933 T22: 0.1626 REMARK 3 T33: 0.1235 T12: 0.0765 REMARK 3 T13: 0.0305 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.9452 L22: 0.3268 REMARK 3 L33: 0.3283 L12: -0.0373 REMARK 3 L13: 0.2587 L23: 0.2791 REMARK 3 S TENSOR REMARK 3 S11: 0.2810 S12: 0.0308 S13: -0.0150 REMARK 3 S21: -0.0835 S22: -0.0997 S23: -0.0334 REMARK 3 S31: -0.2023 S32: -0.0942 S33: 0.1581 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 474 THROUGH 505 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.3296 -2.7556 -47.5593 REMARK 3 T TENSOR REMARK 3 T11: 0.2152 T22: 0.2674 REMARK 3 T33: 0.1701 T12: 0.0445 REMARK 3 T13: 0.0151 T23: 0.0584 REMARK 3 L TENSOR REMARK 3 L11: 0.5541 L22: 0.5087 REMARK 3 L33: 0.4100 L12: -0.1765 REMARK 3 L13: 0.0601 L23: 0.2211 REMARK 3 S TENSOR REMARK 3 S11: 0.1193 S12: 0.2821 S13: 0.1201 REMARK 3 S21: 0.0730 S22: 0.0168 S23: 0.0064 REMARK 3 S31: -0.1102 S32: 0.0228 S33: 0.0035 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 506 THROUGH 519 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.4822 -2.1595 -44.5483 REMARK 3 T TENSOR REMARK 3 T11: 0.2618 T22: 0.2559 REMARK 3 T33: 0.1841 T12: 0.0679 REMARK 3 T13: -0.0425 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.3167 L22: 1.9255 REMARK 3 L33: 0.5137 L12: -0.1573 REMARK 3 L13: 0.6198 L23: 0.5794 REMARK 3 S TENSOR REMARK 3 S11: 0.3757 S12: 0.5553 S13: -0.4142 REMARK 3 S21: -0.0309 S22: -0.3324 S23: 0.2589 REMARK 3 S31: 0.4450 S32: 0.1429 S33: 0.0395 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E6X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214455. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1YUK REMARK 200 REMARK 200 REMARK: AUTHOR USED THE SF DATA FROM ENTRY 2P26 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 15.42650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 54 O HOH A 701 2.12 REMARK 500 O HOH A 702 O HOH A 811 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 712 O HOH A 764 2454 2.12 REMARK 500 O HOH A 703 O HOH A 712 2444 2.13 REMARK 500 O HOH A 708 O HOH A 772 1565 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 58 75.26 -160.20 REMARK 500 ASP A 68 -179.69 -67.42 REMARK 500 ALA A 100 -68.06 -106.31 REMARK 500 LYS A 340 -81.91 -122.45 REMARK 500 LEU A 341 -138.68 67.91 REMARK 500 ASP A 429 -161.64 -103.08 REMARK 500 HIS A 438 16.58 57.18 REMARK 500 GLN A 464 -131.04 55.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2P26 RELATED DB: PDB REMARK 900 THIS ENTRY 5E6X REFLECTS AN ALTERNATIVE MODELING OF X-RAY DATA REMARK 900 R2P26SF DBREF 5E6X A 1 100 UNP P05107 ITB2_HUMAN 23 122 DBREF 5E6X A 340 513 UNP P05107 ITB2_HUMAN 362 535 SEQADV 5E6X HIS A 514 UNP P05107 EXPRESSION TAG SEQADV 5E6X HIS A 515 UNP P05107 EXPRESSION TAG SEQADV 5E6X HIS A 516 UNP P05107 EXPRESSION TAG SEQADV 5E6X HIS A 517 UNP P05107 EXPRESSION TAG SEQADV 5E6X HIS A 518 UNP P05107 EXPRESSION TAG SEQADV 5E6X HIS A 519 UNP P05107 EXPRESSION TAG SEQRES 1 A 280 GLN GLU CYS THR LYS PHE LYS VAL SER SER CYS ARG GLU SEQRES 2 A 280 CYS ILE GLU SER GLY PRO GLY CYS THR TRP CYS GLN LYS SEQRES 3 A 280 LEU ASN PHE THR GLY PRO GLY ASP PRO ASP SER ILE ARG SEQRES 4 A 280 CYS ASP THR ARG PRO GLN LEU LEU MET ARG GLY CYS ALA SEQRES 5 A 280 ALA ASP ASP ILE MET ASP PRO THR SER LEU ALA GLU THR SEQRES 6 A 280 GLN GLU ASP HIS ASN GLY GLY GLN LYS GLN LEU SER PRO SEQRES 7 A 280 GLN LYS VAL THR LEU TYR LEU ARG PRO GLY GLN ALA ALA SEQRES 8 A 280 ALA PHE ASN VAL THR PHE ARG ARG ALA LYS LEU SER SER SEQRES 9 A 280 ARG VAL PHE LEU ASP HIS ASN ALA LEU PRO ASP THR LEU SEQRES 10 A 280 LYS VAL THR TYR ASP SER PHE CYS SER ASN GLY VAL THR SEQRES 11 A 280 HIS ARG ASN GLN PRO ARG GLY ASP CYS ASP GLY VAL GLN SEQRES 12 A 280 ILE ASN VAL PRO ILE THR PHE GLN VAL LYS VAL THR ALA SEQRES 13 A 280 THR GLU CYS ILE GLN GLU GLN SER PHE VAL ILE ARG ALA SEQRES 14 A 280 LEU GLY PHE THR ASP ILE VAL THR VAL GLN VAL LEU PRO SEQRES 15 A 280 GLN CYS GLU CYS ARG CYS ARG ASP GLN SER ARG ASP ARG SEQRES 16 A 280 SER LEU CYS HIS GLY LYS GLY PHE LEU GLU CYS GLY ILE SEQRES 17 A 280 CYS ARG CYS ASP THR GLY TYR ILE GLY LYS ASN CYS GLU SEQRES 18 A 280 CYS GLN THR GLN GLY ARG SER SER GLN GLU LEU GLU GLY SEQRES 19 A 280 SER CYS ARG LYS ASP ASN ASN SER ILE ILE CYS SER GLY SEQRES 20 A 280 LEU GLY ASP CYS VAL CYS GLY GLN CYS LEU CYS HIS THR SEQRES 21 A 280 SER ASP VAL PRO GLY LYS LEU ILE TYR GLY GLN TYR CYS SEQRES 22 A 280 GLU HIS HIS HIS HIS HIS HIS HET NAG A 601 14 HET NAG A 602 14 HET NAG A 603 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 5 HOH *260(H2 O) HELIX 1 AA1 SER A 10 GLU A 16 1 7 HELIX 2 AA2 PRO A 35 ILE A 38 5 4 HELIX 3 AA3 THR A 42 ARG A 49 1 8 HELIX 4 AA4 ALA A 52 ASP A 54 5 3 HELIX 5 AA5 SER A 435 GLY A 439 5 5 HELIX 6 AA6 SER A 467 SER A 474 1 8 HELIX 7 AA7 ILE A 482 GLY A 486 5 5 SHEET 1 AA1 3 CYS A 40 ASP A 41 0 SHEET 2 AA1 3 THR A 22 CYS A 24 -1 N THR A 22 O ASP A 41 SHEET 3 AA1 3 ILE A 56 MET A 57 -1 O MET A 57 N TRP A 23 SHEET 1 AA2 6 LEU A 62 GLN A 66 0 SHEET 2 AA2 6 LYS A 80 LEU A 85 -1 O THR A 82 N GLU A 64 SHEET 3 AA2 6 VAL A 415 PRO A 421 1 O GLN A 418 N LEU A 83 SHEET 4 AA2 6 GLN A 402 ALA A 408 -1 N GLN A 402 O VAL A 419 SHEET 5 AA2 6 VAL A 345 HIS A 349 -1 N ASP A 348 O ARG A 407 SHEET 6 AA2 6 GLY A 376 CYS A 378 -1 O GLY A 376 N LEU A 347 SHEET 1 AA3 5 LEU A 76 SER A 77 0 SHEET 2 AA3 5 ALA A 91 PHE A 97 -1 O THR A 96 N SER A 77 SHEET 3 AA3 5 ILE A 387 ALA A 395 -1 O VAL A 391 N PHE A 93 SHEET 4 AA3 5 LEU A 356 PHE A 363 -1 N LYS A 357 O THR A 394 SHEET 5 AA3 5 THR A 369 GLN A 373 -1 O GLN A 373 N TYR A 360 SHEET 1 AA4 2 GLY A 441 GLU A 444 0 SHEET 2 AA4 2 ILE A 447 CYS A 450 -1 O ARG A 449 N PHE A 442 SHEET 1 AA5 2 TYR A 454 ILE A 455 0 SHEET 2 AA5 2 CYS A 461 GLN A 462 -1 O CYS A 461 N ILE A 455 SHEET 1 AA6 2 GLY A 488 VAL A 491 0 SHEET 2 AA6 2 GLN A 494 CYS A 497 -1 O LEU A 496 N ASP A 489 SHEET 1 AA7 2 GLY A 504 TYR A 508 0 SHEET 2 AA7 2 HIS A 514 HIS A 519 -1 O HIS A 519 N GLY A 504 SSBOND 1 CYS A 3 CYS A 21 1555 1555 2.03 SSBOND 2 CYS A 11 CYS A 425 1555 1555 2.03 SSBOND 3 CYS A 14 CYS A 40 1555 1555 2.03 SSBOND 4 CYS A 24 CYS A 51 1555 1555 2.03 SSBOND 5 CYS A 364 CYS A 378 1555 1555 2.03 SSBOND 6 CYS A 398 CYS A 423 1555 1555 2.03 SSBOND 7 CYS A 427 CYS A 445 1555 1555 2.03 SSBOND 8 CYS A 437 CYS A 448 1555 1555 2.03 SSBOND 9 CYS A 450 CYS A 459 1555 1555 2.03 SSBOND 10 CYS A 461 CYS A 492 1555 1555 2.04 SSBOND 11 CYS A 475 CYS A 490 1555 1555 2.04 SSBOND 12 CYS A 484 CYS A 495 1555 1555 2.03 SSBOND 13 CYS A 497 CYS A 512 1555 1555 2.03 LINK ND2 ASN A 28 C1 NAG A 603 1555 1555 1.44 LINK ND2 ASN A 94 C1 NAG A 601 1555 1555 1.44 LINK ND2 ASN A 479 C1 NAG A 602 1555 1555 1.44 CISPEP 1 SER A 77 PRO A 78 0 0.98 CRYST1 58.489 30.853 65.157 90.00 94.29 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017097 0.000000 0.001283 0.00000 SCALE2 0.000000 0.032412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015391 0.00000