HEADER SUGAR BINDING PROTEIN 11-OCT-15 5E76 TITLE CRYSTAL STRUCTURE OF BACOVA_02651 WITH XYLOGLUCO-OLIGOSACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUSD-LIKE PROTEIN BACOVA_02651; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 36-546; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS (STRAIN ATCC 8483 / DSM 1896 SOURCE 3 / JCM 5824 / NCTC 11153); SOURCE 4 ORGANISM_TAXID: 411476; SOURCE 5 STRAIN: ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153; SOURCE 6 GENE: BACOVA_02651; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3) PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS SUSD HOMOLOG, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.M.KOROPATKIN REVDAT 5 27-SEP-23 5E76 1 HETSYN LINK REVDAT 4 29-JUL-20 5E76 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 17-AUG-16 5E76 1 JRNL REVDAT 2 18-MAY-16 5E76 1 JRNL REVDAT 1 11-MAY-16 5E76 0 JRNL AUTH A.S.TAUZIN,K.J.KWIATKOWSKI,N.I.ORLOVSKY,C.J.SMITH, JRNL AUTH 2 A.L.CREAGH,C.A.HAYNES,Z.WAWRZAK,H.BRUMER,N.M.KOROPATKIN JRNL TITL MOLECULAR DISSECTION OF XYLOGLUCAN RECOGNITION IN A JRNL TITL 2 PROMINENT HUMAN GUT SYMBIONT. JRNL REF MBIO V. 7 02134 2016 JRNL REFN ESSN 2150-7511 JRNL PMID 27118585 JRNL DOI 10.1128/MBIO.02134-15 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 36766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.440 REMARK 3 FREE R VALUE TEST SET COUNT : 1939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.1444 - 6.8959 0.99 2451 136 0.1874 0.1842 REMARK 3 2 6.8959 - 5.4750 1.00 2454 141 0.1870 0.2312 REMARK 3 3 5.4750 - 4.7833 1.00 2469 137 0.1684 0.2114 REMARK 3 4 4.7833 - 4.3462 1.00 2463 140 0.1596 0.1988 REMARK 3 5 4.3462 - 4.0347 1.00 2450 141 0.1722 0.2299 REMARK 3 6 4.0347 - 3.7969 1.00 2443 132 0.1803 0.2062 REMARK 3 7 3.7969 - 3.6068 1.00 2481 137 0.1982 0.2095 REMARK 3 8 3.6068 - 3.4498 1.00 2430 138 0.2078 0.2873 REMARK 3 9 3.4498 - 3.3170 1.00 2430 138 0.2231 0.2558 REMARK 3 10 3.3170 - 3.2026 0.99 2448 147 0.2305 0.3059 REMARK 3 11 3.2026 - 3.1024 1.00 2454 147 0.2422 0.2453 REMARK 3 12 3.1024 - 3.0138 1.00 2435 141 0.2449 0.3146 REMARK 3 13 3.0138 - 2.9344 1.00 2434 144 0.2554 0.3009 REMARK 3 14 2.9344 - 2.8628 0.99 2433 138 0.2537 0.2825 REMARK 3 15 2.8628 - 2.7978 1.00 2473 138 0.2348 0.2440 REMARK 3 16 2.7978 - 2.7382 1.00 2419 149 0.2535 0.3038 REMARK 3 17 2.7382 - 2.6835 1.00 2436 138 0.2645 0.3069 REMARK 3 18 2.6835 - 2.6328 1.00 2459 129 0.2740 0.3536 REMARK 3 19 2.6328 - 2.5858 0.99 2445 142 0.2877 0.3122 REMARK 3 20 2.5858 - 2.5420 0.99 2400 146 0.2652 0.2894 REMARK 3 21 2.5420 - 2.5010 0.99 2481 142 0.2715 0.2953 REMARK 3 22 2.5010 - 2.4625 0.99 2437 149 0.2710 0.3141 REMARK 3 23 2.4625 - 2.4263 0.99 2410 134 0.2814 0.2946 REMARK 3 24 2.4263 - 2.3921 1.00 2424 142 0.2647 0.3496 REMARK 3 25 2.3921 - 2.3598 1.00 2455 147 0.2567 0.3258 REMARK 3 26 2.3598 - 2.3291 1.00 2441 140 0.2769 0.2709 REMARK 3 27 2.3291 - 2.3000 0.99 2448 144 0.2742 0.2846 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 4196 REMARK 3 ANGLE : 1.379 5672 REMARK 3 CHIRALITY : 0.058 616 REMARK 3 PLANARITY : 0.007 724 REMARK 3 DIHEDRAL : 14.676 1498 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A):-100.0743 17.3535 589.0297 REMARK 3 T TENSOR REMARK 3 T11: 0.3432 T22: 0.9787 REMARK 3 T33: 0.3623 T12: -0.5517 REMARK 3 T13: -0.1389 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.5258 L22: 0.3317 REMARK 3 L33: 0.6858 L12: 0.2581 REMARK 3 L13: 0.1413 L23: -0.1707 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: -0.0088 S13: 0.0740 REMARK 3 S21: 0.1711 S22: -0.0358 S23: -0.2156 REMARK 3 S31: -0.6295 S32: 1.0569 S33: -0.0120 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E76 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214467. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.15-6.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36775 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 56.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 29.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 28.40 REMARK 200 R MERGE FOR SHELL (I) : 0.71800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.710 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5E75 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2-1.8 SODIUM CITRATE, PH 6.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 65.75000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 65.75000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 94.02000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 65.75000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 65.75000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 94.02000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 65.75000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 65.75000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 94.02000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 65.75000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 65.75000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 94.02000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 65.75000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 65.75000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 94.02000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 65.75000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 65.75000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 94.02000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 65.75000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 65.75000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 94.02000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 65.75000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 65.75000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 94.02000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 36 REMARK 465 ASP A 37 REMARK 465 ALA A 38 REMARK 465 THR A 39 REMARK 465 PHE A 40 REMARK 465 TYR A 41 REMARK 465 THR A 42 REMARK 465 SER A 43 REMARK 465 ASP A 44 REMARK 465 THR A 124 REMARK 465 GLN A 125 REMARK 465 GLY A 126 REMARK 465 SER A 127 REMARK 465 VAL A 128 REMARK 465 ASP A 484 REMARK 465 GLY A 485 REMARK 465 ASP A 495 REMARK 465 GLY A 496 REMARK 465 THR A 497 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 BGC B 3 H1 XYS B 9 1.30 REMARK 500 HH TYR A 62 HH TYR A 450 1.33 REMARK 500 OD1 ASP A 432 HZ1 LYS A 462 1.49 REMARK 500 O GLN A 165 H LEU A 167 1.51 REMARK 500 O4 BGC B 4 O5 BGC B 5 2.06 REMARK 500 O HOH A 882 O HOH A 912 2.10 REMARK 500 OD1 ASN A 226 O HOH A 701 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 518 CD GLU A 518 OE1 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 56 -68.60 -132.05 REMARK 500 ARG A 65 -54.93 -166.11 REMARK 500 THR A 122 44.60 -70.59 REMARK 500 GLN A 165 -56.99 67.96 REMARK 500 LYS A 166 -38.88 57.29 REMARK 500 LYS A 202 106.79 -30.54 REMARK 500 TRP A 224 108.18 -54.67 REMARK 500 TYR A 284 -3.92 76.26 REMARK 500 TRP A 306 4.50 -159.56 REMARK 500 ASP A 323 48.02 -94.30 REMARK 500 ALA A 354 -154.64 -117.01 REMARK 500 SER A 355 45.24 -148.33 REMARK 500 LYS A 372 46.13 -88.20 REMARK 500 ASN A 377 85.26 -153.43 REMARK 500 SER A 447 -4.68 -146.49 REMARK 500 ASP A 482 -134.31 -104.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 616 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 231 OD1 REMARK 620 2 ASP A 231 OD2 52.7 REMARK 620 3 ASN A 468 O 31.9 31.1 REMARK 620 4 ASN A 469 OD1 28.1 29.4 6.0 REMARK 620 5 EDO A 613 O1 29.2 32.7 2.8 4.9 REMARK 620 6 HOH A 898 O 29.7 35.6 4.6 8.4 3.5 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5E75 RELATED DB: PDB REMARK 900 RELATED ID: 5E7G RELATED DB: PDB REMARK 900 RELATED ID: 5E7H RELATED DB: PDB DBREF 5E76 A 36 546 UNP A7LXT5 SUSD_BACO1 36 546 SEQRES 1 A 511 VAL ASP ALA THR PHE TYR THR SER ASP GLU ALA LEU GLU SEQRES 2 A 511 ALA ALA THR ALA PRO LEU TYR ASN ARG ALA TRP PHE ASP SEQRES 3 A 511 TYR ASN GLN ARG SER ILE VAL PRO ILE GLY SER GLY ARG SEQRES 4 A 511 ALA ASN ASP MET TYR SER PRO TRP ASN TYR PRO GLN PHE SEQRES 5 A 511 VAL THR PHE GLN VAL THR ALA LEU ASP GLU ASN LEU SER SEQRES 6 A 511 GLY ALA TRP SER GLY PHE TYR SER VAL VAL THR MET ALA SEQRES 7 A 511 ASN SER VAL ILE ASN ALA VAL GLU THR GLN THR GLN GLY SEQRES 8 A 511 SER VAL SER GLU ALA ALA LYS THR LYS ALA ILE ALA GLU SEQRES 9 A 511 ALA ARG LEU MET ARG ALA CYS ALA TYR PHE TYR MET LEU SEQRES 10 A 511 ARG ILE TRP GLY PRO VAL ILE LEU ILE GLU ASP ASN GLN SEQRES 11 A 511 LYS LEU VAL ASP ASN PRO VAL ARG PRO LEU ASN ARG GLU SEQRES 12 A 511 GLU ASP VAL PHE GLN PHE ILE ILE ASN ASP LEU ASN TYR SEQRES 13 A 511 ALA VAL ASP ASN LEU SER GLU GLN SER ASP LYS GLY ARG SEQRES 14 A 511 ALA THR SER TRP ALA ALA LYS GLY ILE LEU ALA LYS VAL SEQRES 15 A 511 TYR LEU ALA ARG SER GLY TRP ASN ASN GLY GLY THR ARG SEQRES 16 A 511 ASP GLU GLY ASP LEU GLU LEU ALA ARG GLN TYR ALA SER SEQRES 17 A 511 ASP VAL CYS GLU ASN SER GLY LEU ASP LEU MET THR ASN SEQRES 18 A 511 TYR GLU ASP LEU PHE LYS TYR LYS ASN ASN ASN ASN GLN SEQRES 19 A 511 GLU SER LEU LEU ALA MET GLN TRP VAL PRO LEU GLY GLU SEQRES 20 A 511 TRP TYR GLU CYS ASN THR LEU LEU SER ASP LEU ALA PHE SEQRES 21 A 511 SER THR GLU VAL THR GLY GLY VAL ASN CYS TRP SER SER SEQRES 22 A 511 TYR ASN GLY SER ILE ASP MET LEU GLN GLN TYR GLU LEU SEQRES 23 A 511 ALA ASP THR LEU ARG ARG ASN ALA THR PHE PHE THR LYS SEQRES 24 A 511 GLY SER TYR TYR SER TYR ILE CYS ILE LYS ASP GLY GLY SEQRES 25 A 511 TYR THR TYR LYS GLY THR ALA SER PRO ILE LYS LYS GLY SEQRES 26 A 511 VAL PRO GLY GLY PRO ASP ASP ASP ASN ASP GLY LYS VAL SEQRES 27 A 511 LYS GLN MET ASN SER PRO LEU ASN THR TYR ILE LEU ARG SEQRES 28 A 511 LEU ALA ASP VAL TYR LEU THR TYR ALA GLU ALA CYS LEU SEQRES 29 A 511 GLY ASN ASN SER THR LEU SER ASP GLY ARG GLY LEU TYR SEQRES 30 A 511 PHE PHE ASN ARG VAL ARG GLU ARG ALA LYS ILE ASN LYS SEQRES 31 A 511 LYS SER SER ILE THR LEU ASP ASP ILE ILE ARG GLU ARG SEQRES 32 A 511 ARG VAL GLU PHE GLY MET GLU TYR SER ASN TRP TYR ASP SEQRES 33 A 511 MET VAL THR TRP PHE ARG TYR LEU PRO ASP LYS MET LEU SEQRES 34 A 511 ASN TYR PHE ASN ASN GLN TRP ARG GLY TYR ARG THR ASP SEQRES 35 A 511 ALA ILE ILE LYS ASP GLU ASP GLY LYS LEU HIS PHE GLY SEQRES 36 A 511 LYS TYR ASP THR ASP GLY THR THR PHE LEU GLU GLY PRO SEQRES 37 A 511 GLU TYR TYR THR ALA PRO GLU PHE THR ILE ASN ILE GLU SEQRES 38 A 511 ALA GLU ASP ILE PHE LEU PRO TYR PRO GLU SER ASP VAL SEQRES 39 A 511 ILE GLN ASN PRO LEU LEU ASN GLU PRO PRO VAL PRO TYR SEQRES 40 A 511 THR PHE ASN GLU HET BGC B 1 23 HET BGC B 2 21 HET BGC B 3 20 HET BGC B 4 20 HET BGC B 5 21 HET BGC B 6 21 HET BGC B 7 22 HET XYS B 8 18 HET XYS B 9 18 HET EDO A 610 10 HET EDO A 611 10 HET EDO A 612 10 HET EDO A 613 10 HET EDO A 614 10 HET CL A 615 1 HET NA A 616 1 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM XYS ALPHA-D-XYLOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 BGC 7(C6 H12 O6) FORMUL 2 XYS 2(C5 H10 O5) FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 CL CL 1- FORMUL 9 NA NA 1+ FORMUL 10 HOH *229(H2 O) HELIX 1 AA1 ALA A 46 ALA A 52 1 7 HELIX 2 AA2 PRO A 53 ALA A 58 5 6 HELIX 3 AA3 TRP A 59 GLN A 64 1 6 HELIX 4 AA4 SER A 66 SER A 72 1 7 HELIX 5 AA5 PRO A 85 PHE A 90 1 6 HELIX 6 AA6 ASP A 96 VAL A 120 1 25 HELIX 7 AA7 GLU A 130 ARG A 153 1 24 HELIX 8 AA8 ARG A 177 LEU A 196 1 20 HELIX 9 AA9 THR A 206 TRP A 224 1 19 HELIX 10 AB1 ASP A 231 SER A 249 1 19 HELIX 11 AB2 ASN A 256 ASN A 266 5 11 HELIX 12 AB3 LEU A 289 ALA A 294 1 6 HELIX 13 AB4 SER A 296 THR A 300 5 5 HELIX 14 AB5 SER A 312 GLN A 318 1 7 HELIX 15 AB6 ASP A 323 PHE A 331 1 9 HELIX 16 AB7 CYS A 342 GLY A 346 5 5 HELIX 17 AB8 LEU A 387 GLY A 400 1 14 HELIX 18 AB9 GLY A 408 ALA A 421 1 14 HELIX 19 AC1 THR A 430 GLY A 443 1 14 HELIX 20 AC2 SER A 447 LEU A 459 1 13 HELIX 21 AC3 LEU A 459 ASN A 468 1 10 HELIX 22 AC4 PRO A 503 TYR A 506 5 4 HELIX 23 AC5 GLU A 516 ILE A 520 5 5 HELIX 24 AC6 PRO A 525 ASN A 532 1 8 HELIX 25 AC7 PRO A 533 GLU A 537 5 5 SHEET 1 AA1 2 MET A 78 TYR A 79 0 SHEET 2 AA1 2 ASN A 310 GLY A 311 -1 O ASN A 310 N TYR A 79 SHEET 1 AA2 2 SER A 271 MET A 275 0 SHEET 2 AA2 2 THR A 382 ARG A 386 -1 O THR A 382 N MET A 275 SHEET 1 AA3 2 TYR A 337 TYR A 338 0 SHEET 2 AA3 2 TYR A 348 THR A 349 -1 O TYR A 348 N TYR A 338 SHEET 1 AA4 3 ALA A 478 LYS A 481 0 SHEET 2 AA4 3 LEU A 487 TYR A 492 -1 O GLY A 490 N ALA A 478 SHEET 3 AA4 3 PHE A 499 GLU A 501 -1 O LEU A 500 N LYS A 491 LINK O4 BGC B 1 C1 BGC B 2 1555 1555 1.48 LINK O4 BGC B 2 C1 BGC B 3 1555 1555 1.42 LINK O4 BGC B 3 C1 BGC B 4 1555 1555 1.42 LINK O6 BGC B 3 C1 XYS B 9 1555 1555 1.48 LINK O4 BGC B 4 C1 BGC B 5 1555 1555 1.18 LINK O6 BGC B 4 C1 XYS B 8 1555 1555 1.41 LINK O4 BGC B 5 C1 BGC B 6 1555 1555 1.39 LINK O4 BGC B 6 C1 BGC B 7 1555 1555 1.41 LINK OD1 ASP A 231 NA NA A 616 1555 4445 2.68 LINK OD2 ASP A 231 NA NA A 616 1555 4445 2.28 LINK O ASN A 468 NA NA A 616 1555 1555 2.21 LINK OD1 ASN A 469 NA NA A 616 1555 1555 2.95 LINK O1 EDO A 613 NA NA A 616 1555 1555 2.79 LINK NA NA A 616 O HOH A 898 1555 1555 2.51 CRYST1 131.500 131.500 188.040 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007605 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007605 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005318 0.00000