HEADER SUGAR BINDING PROTEIN 12-OCT-15 5E7G TITLE CRYSTAL STRUCTURE OF BACOVA_02650 WITH XYLOGLUCO-OLIGOSACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: IPT/TIG DOMAIN-CONTAINING PROTEIN BACOVA_02650; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 34-489; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS (STRAIN ATCC 8483 / DSM 1896 SOURCE 3 / JCM 5824 / NCTC 11153); SOURCE 4 ORGANISM_TAXID: 411476; SOURCE 5 STRAIN: ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153; SOURCE 6 GENE: BACOVA_02650; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3) PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CARBOHYDRATE-BINDING PROTEIN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.M.KOROPATKIN REVDAT 5 06-MAR-24 5E7G 1 HETSYN LINK REVDAT 4 29-JUL-20 5E7G 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 17-AUG-16 5E7G 1 JRNL REVDAT 2 18-MAY-16 5E7G 1 JRNL REVDAT 1 04-MAY-16 5E7G 0 JRNL AUTH A.S.TAUZIN,K.J.KWIATKOWSKI,N.I.ORLOVSKY,C.J.SMITH, JRNL AUTH 2 A.L.CREAGH,C.A.HAYNES,Z.WAWRZAK,H.BRUMER,N.M.KOROPATKIN JRNL TITL MOLECULAR DISSECTION OF XYLOGLUCAN RECOGNITION IN A JRNL TITL 2 PROMINENT HUMAN GUT SYMBIONT. JRNL REF MBIO V. 7 02134 2016 JRNL REFN ESSN 2150-7511 JRNL PMID 27118585 JRNL DOI 10.1128/MBIO.02134-15 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1900 - 7.1825 0.99 2594 142 0.1644 0.2124 REMARK 3 2 7.1825 - 5.7066 1.00 2591 155 0.1672 0.1798 REMARK 3 3 5.7066 - 4.9869 1.00 2596 150 0.1414 0.1420 REMARK 3 4 4.9869 - 4.5317 1.00 2602 141 0.1306 0.1328 REMARK 3 5 4.5317 - 4.2073 1.00 2578 157 0.1300 0.1599 REMARK 3 6 4.2073 - 3.9595 1.00 2628 118 0.1567 0.1797 REMARK 3 7 3.9595 - 3.7613 1.00 2600 152 0.1722 0.2081 REMARK 3 8 3.7613 - 3.5977 1.00 2577 148 0.1914 0.2264 REMARK 3 9 3.5977 - 3.4593 1.00 2604 142 0.2069 0.2326 REMARK 3 10 3.4593 - 3.3400 1.00 2594 139 0.2196 0.2747 REMARK 3 11 3.3400 - 3.2356 1.00 2591 141 0.2272 0.2649 REMARK 3 12 3.2356 - 3.1432 1.00 2623 129 0.2233 0.3396 REMARK 3 13 3.1432 - 3.0605 1.00 2599 151 0.2475 0.2511 REMARK 3 14 3.0605 - 2.9858 1.00 2610 130 0.2423 0.2744 REMARK 3 15 2.9858 - 2.9180 1.00 2590 139 0.2442 0.3135 REMARK 3 16 2.9180 - 2.8559 1.00 2617 128 0.2492 0.3027 REMARK 3 17 2.8559 - 2.7988 1.00 2618 123 0.2551 0.3016 REMARK 3 18 2.7988 - 2.7460 1.00 2624 125 0.2552 0.2841 REMARK 3 19 2.7460 - 2.6969 1.00 2559 161 0.2551 0.2985 REMARK 3 20 2.6969 - 2.6512 1.00 2620 131 0.2596 0.3359 REMARK 3 21 2.6512 - 2.6085 1.00 2612 131 0.2450 0.2514 REMARK 3 22 2.6085 - 2.5684 1.00 2543 161 0.2601 0.3213 REMARK 3 23 2.5684 - 2.5306 1.00 2617 145 0.2711 0.3164 REMARK 3 24 2.5306 - 2.4950 1.00 2625 127 0.2881 0.3118 REMARK 3 25 2.4950 - 2.4612 1.00 2609 139 0.2651 0.2924 REMARK 3 26 2.4612 - 2.4293 1.00 2625 118 0.2976 0.3635 REMARK 3 27 2.4293 - 2.3989 1.00 2552 157 0.3064 0.3104 REMARK 3 28 2.3989 - 2.3700 1.00 2613 126 0.3048 0.3147 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3637 REMARK 3 ANGLE : 0.905 4976 REMARK 3 CHIRALITY : 0.033 602 REMARK 3 PLANARITY : 0.003 622 REMARK 3 DIHEDRAL : 13.202 1241 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E7G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214488. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39362 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 39.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 TO 1.5 M AMMONIUM SULPHATE, 30 TO REMARK 280 70 MM SODIUM CACODYLATE PH 6.5. TO DECREASE CRYSTAL NUCLEATION, REMARK 280 0.3 ML OF PARAFFIN OIL WAS OVERLAID ON TOP OF 0.5 MLS OF MOTHER REMARK 280 LIQUOR, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 103.69500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.86834 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 39.29000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 103.69500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 59.86834 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 39.29000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 103.69500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 59.86834 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 39.29000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 103.69500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 59.86834 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 39.29000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 103.69500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 59.86834 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 39.29000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 103.69500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 59.86834 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.29000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 119.73667 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 78.58000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 119.73667 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 78.58000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 119.73667 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 78.58000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 119.73667 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 78.58000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 119.73667 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 78.58000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 119.73667 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 78.58000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 726 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 45 REMARK 465 ASP A 46 REMARK 465 PRO A 47 REMARK 465 ALA A 48 REMARK 465 LYS A 49 REMARK 465 ALA A 50 REMARK 465 ASP A 51 REMARK 465 SER A 52 REMARK 465 THR A 53 REMARK 465 PHE A 54 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 BGC B 3 O5 BGC B 4 2.12 REMARK 500 O3 BGC B 2 O5 BGC B 3 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 122 -39.59 -130.96 REMARK 500 SER A 219 -169.49 -175.24 REMARK 500 ASN A 264 27.64 49.54 REMARK 500 GLU A 310 150.93 -45.41 REMARK 500 ALA A 343 -138.72 57.80 REMARK 500 TYR A 345 -56.96 69.64 REMARK 500 TRP A 364 90.00 -155.84 REMARK 500 TRP A 365 -94.77 -108.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 510 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 321 O REMARK 620 2 ASP A 323 OD2 74.2 REMARK 620 3 ASN A 348 O 146.8 72.8 REMARK 620 4 THR A 350 O 82.3 92.5 95.4 REMARK 620 5 ASP A 482 OD1 83.8 153.0 128.9 100.1 REMARK 620 6 ASP A 482 OD2 130.8 151.6 80.6 80.1 55.1 REMARK 620 7 HOH A 608 O 102.6 84.6 78.1 173.3 85.0 99.7 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5E75 RELATED DB: PDB REMARK 900 RELATED ID: 5E76 RELATED DB: PDB REMARK 900 RELATED ID: 5E7H RELATED DB: PDB DBREF 5E7G A 34 489 UNP A7LXT4 Y2650_BACO1 34 489 SEQADV 5E7G ALA A 265 UNP A7LXT4 GLY 265 CONFLICT SEQRES 1 A 456 ASP ALA ILE PRO VAL ILE HIS TYR ILE ARG VAL THR ASP SEQRES 2 A 456 PRO ALA LYS ALA ASP SER THR PHE THR ASP VAL ASN PRO SEQRES 3 A 456 GLY THR MET ILE VAL VAL VAL GLY GLU HIS LEU GLY GLY SEQRES 4 A 456 THR GLN LYS VAL TYR ILE ASN ASP GLN GLU VAL SER PHE SEQRES 5 A 456 ASN ARG ASN TYR VAL THR SER THR SER ILE ILE LEU THR SEQRES 6 A 456 VAL PRO ASN GLU LEU GLU LEU THR GLY GLN ASN PRO GLU SEQRES 7 A 456 LEU LYS GLY GLU ILE ARG ILE GLU THR GLU HIS GLY VAL SEQRES 8 A 456 ALA ALA TYR ASN MET HIS VAL LEU SER PRO ALA PRO TYR SEQRES 9 A 456 ILE THR ARG ILE SER ALA THR TYR PRO ILE LYS PRO GLY SEQRES 10 A 456 ASP GLN MET THR VAL ILE GLY GLY ASN PHE TYR GLU VAL SEQRES 11 A 456 GLN ALA VAL TYR LEU SER THR GLU GLN PRO ALA LYS ASP SEQRES 12 A 456 GLY THR ARG PRO VAL ASP VAL GLN GLU ILE THR ASN TYR SEQRES 13 A 456 GLU VAL ASN ASN LYS TYR SER GLN ILE THR LEU THR ALA SEQRES 14 A 456 PRO ALA ASN LEU LEU GLU GLU GLY TYR LEU VAL VAL GLU SEQRES 15 A 456 CYS TYR THR SER SER ALA VAL THR GLU PHE LYS LYS ASN SEQRES 16 A 456 GLY PRO LYS PRO VAL VAL THR ALA VAL SER SER THR MET SEQRES 17 A 456 PRO VAL VAL GLY SER THR VAL THR ILE THR GLY GLN ASN SEQRES 18 A 456 PHE ILE GLU VAL SER ARG VAL ASN ILE ASN ALA GLU PHE SEQRES 19 A 456 ASP ILE PRO VAL GLY ASP ILE THR THR SER ASN THR PHE SEQRES 20 A 456 ASP GLU ILE SER PHE VAL LEU PRO GLN ALA PRO THR GLN SEQRES 21 A 456 SER GLY HIS ILE SER VAL THR ALA ILE GLY GLY THR VAL SEQRES 22 A 456 GLU SER ALA GLU ILE PHE TYR PRO LEU GLU ASN VAL ILE SEQRES 23 A 456 LEU ASN TYR ASP GLY ILE GLY SER HIS VAL TRP GLY ASP SEQRES 24 A 456 CYS SER PHE VAL VAL ALA ASP GLY SER SER ALA PRO TYR SEQRES 25 A 456 VAL SER ASN GLY THR CYS LEU GLY ILE THR GLY THR VAL SEQRES 26 A 456 SER ALA SER ASN TYR TRP TRP LYS GLN SER TYR SER ASN SEQRES 27 A 456 ALA GLN TRP VAL ASN THR SER ILE ILE PRO GLY ASN ILE SEQRES 28 A 456 PRO ILE ASP ASP LEU LYS LEU GLN PHE GLU CYS PHE VAL SEQRES 29 A 456 LYS GLU VAL PHE THR GLY PRO VAL PHE GLN ILE ALA MET SEQRES 30 A 456 CYS GLU ASN PHE ASP ALA ALA LEU ASN GLY TYR VAL PRO SEQRES 31 A 456 VAL SER SER PHE THR GLY LYS THR GLU THR GLY LYS TRP SEQRES 32 A 456 MET GLN CYS SER VAL SER LEU SER SER VAL VAL ALA ASP SEQRES 33 A 456 ALA THR TYR GLN ASP PHE LEU ASN ARG ASN SER THR HIS SEQRES 34 A 456 ILE GLY VAL TYR ALA THR ASN PRO GLY SER SER GLN ALA SEQRES 35 A 456 THR ILE GLU VAL TYR PHE ASP ASN PHE ARG ILE VAL ARG SEQRES 36 A 456 LYS HET BGC B 1 23 HET BGC B 2 20 HET BGC B 3 20 HET BGC B 4 20 HET BGC B 5 21 HET BGC B 6 22 HET XYS B 7 18 HET XYS B 8 18 HET XYS B 9 18 HET CA A 510 1 HET SO4 A 511 5 HET SO4 A 512 5 HET SO4 A 513 5 HET SO4 A 514 5 HET EDO A 515 10 HET EDO A 516 10 HET EDO A 517 10 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM XYS ALPHA-D-XYLOPYRANOSE HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 BGC 6(C6 H12 O6) FORMUL 2 XYS 3(C5 H10 O5) FORMUL 3 CA CA 2+ FORMUL 4 SO4 4(O4 S 2-) FORMUL 8 EDO 3(C2 H6 O2) FORMUL 11 HOH *126(H2 O) HELIX 1 AA1 ASN A 86 VAL A 90 5 5 HELIX 2 AA2 PRO A 270 ILE A 274 5 5 HELIX 3 AA3 PRO A 314 GLU A 316 5 3 HELIX 4 AA4 PRO A 385 ASP A 387 5 3 HELIX 5 AA5 SER A 444 VAL A 446 5 3 HELIX 6 AA6 THR A 451 ASN A 457 1 7 SHEET 1 AA1 3 VAL A 38 ARG A 43 0 SHEET 2 AA1 3 MET A 62 GLU A 68 -1 O VAL A 66 N HIS A 40 SHEET 3 AA1 3 SER A 94 THR A 98 -1 O ILE A 95 N VAL A 65 SHEET 1 AA2 2 ASP A 56 VAL A 57 0 SHEET 2 AA2 2 HIS A 130 VAL A 131 1 O HIS A 130 N VAL A 57 SHEET 1 AA3 4 GLN A 81 VAL A 83 0 SHEET 2 AA3 4 LYS A 75 ILE A 78 -1 N VAL A 76 O VAL A 83 SHEET 3 AA3 4 GLU A 115 GLU A 119 -1 O ARG A 117 N TYR A 77 SHEET 4 AA3 4 VAL A 124 ASN A 128 -1 O ALA A 125 N ILE A 118 SHEET 1 AA4 4 TYR A 137 SER A 142 0 SHEET 2 AA4 4 GLN A 152 GLY A 158 -1 O THR A 154 N SER A 142 SHEET 3 AA4 4 GLN A 197 THR A 201 -1 O ILE A 198 N VAL A 155 SHEET 4 AA4 4 TYR A 189 VAL A 191 -1 N GLU A 190 O THR A 199 SHEET 1 AA5 4 GLN A 184 GLU A 185 0 SHEET 2 AA5 4 VAL A 163 SER A 169 -1 N LEU A 168 O GLN A 184 SHEET 3 AA5 4 GLU A 209 CYS A 216 -1 O GLU A 215 N GLN A 164 SHEET 4 AA5 4 SER A 220 LYS A 226 -1 O ALA A 221 N VAL A 214 SHEET 1 AA6 4 VAL A 233 VAL A 237 0 SHEET 2 AA6 4 THR A 247 GLN A 253 -1 O THR A 251 N THR A 235 SHEET 3 AA6 4 GLU A 282 VAL A 286 -1 O ILE A 283 N ILE A 250 SHEET 4 AA6 4 THR A 275 THR A 276 -1 N THR A 275 O SER A 284 SHEET 1 AA7 4 PHE A 267 ASP A 268 0 SHEET 2 AA7 4 ARG A 260 ILE A 263 -1 N ILE A 263 O PHE A 267 SHEET 3 AA7 4 ILE A 297 ALA A 301 -1 O THR A 300 N ARG A 260 SHEET 4 AA7 4 GLY A 304 GLU A 307 -1 O GLY A 304 N ALA A 301 SHEET 1 AA8 4 VAL A 318 LEU A 320 0 SHEET 2 AA8 4 ALA A 475 ARG A 488 -1 O PHE A 484 N ILE A 319 SHEET 3 AA8 4 CYS A 351 VAL A 358 -1 N VAL A 358 O ALA A 475 SHEET 4 AA8 4 SER A 334 VAL A 336 -1 N SER A 334 O GLY A 353 SHEET 1 AA9 4 VAL A 318 LEU A 320 0 SHEET 2 AA9 4 ALA A 475 ARG A 488 -1 O PHE A 484 N ILE A 319 SHEET 3 AA9 4 LEU A 389 VAL A 397 -1 N GLN A 392 O ARG A 485 SHEET 4 AA9 4 TRP A 436 SER A 442 -1 O CYS A 439 N PHE A 393 SHEET 1 AB1 5 SER A 327 TRP A 330 0 SHEET 2 AB1 5 ASN A 362 ASN A 371 -1 O ASN A 371 N SER A 327 SHEET 3 AB1 5 HIS A 462 ASN A 469 -1 O ALA A 467 N LYS A 366 SHEET 4 AB1 5 VAL A 405 MET A 410 -1 N VAL A 405 O THR A 468 SHEET 5 AB1 5 LEU A 418 TYR A 421 -1 O LEU A 418 N ILE A 408 LINK O4 BGC B 1 C1 BGC B 2 1555 1555 1.43 LINK O4 BGC B 2 C1 BGC B 3 1555 1555 1.44 LINK O6 BGC B 2 C1 XYS B 9 1555 1555 1.45 LINK O4 BGC B 3 C1 BGC B 4 1555 1555 1.43 LINK O6 BGC B 3 C1 XYS B 8 1555 1555 1.43 LINK O4 BGC B 4 C1 BGC B 5 1555 1555 1.43 LINK O6 BGC B 4 C1 XYS B 7 1555 1555 1.43 LINK O4 BGC B 5 C1 BGC B 6 1555 1555 1.44 LINK O ASN A 321 CA CA A 510 1555 1555 2.39 LINK OD2 ASP A 323 CA CA A 510 1555 1555 2.36 LINK O ASN A 348 CA CA A 510 1555 1555 2.40 LINK O THR A 350 CA CA A 510 1555 1555 2.37 LINK OD1 ASP A 482 CA CA A 510 1555 1555 2.38 LINK OD2 ASP A 482 CA CA A 510 1555 1555 2.35 LINK CA CA A 510 O HOH A 608 1555 1555 2.38 CISPEP 1 TYR A 145 PRO A 146 0 0.23 CRYST1 207.390 207.390 117.870 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004822 0.002784 0.000000 0.00000 SCALE2 0.000000 0.005568 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008484 0.00000