HEADER SUGAR BINDING PROTEIN 12-OCT-15 5E7H TITLE CRYSTAL STRUCTURE OF DOMAINS CD (RESIDUES 230-489) OF BACOVA_02650 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IPT/TIG DOMAIN-CONTAINING PROTEIN BACOVA_02650; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 230-489; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS (STRAIN ATCC 8483 / DSM 1896 SOURCE 3 / JCM 5824 / NCTC 11153); SOURCE 4 ORGANISM_TAXID: 411476; SOURCE 5 STRAIN: ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153; SOURCE 6 GENE: BACOVA_02650; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3) PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CARBOHYDRATE-BINDING PROTEIN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.M.KOROPATKIN REVDAT 4 27-SEP-23 5E7H 1 REMARK LINK REVDAT 3 17-AUG-16 5E7H 1 JRNL REVDAT 2 18-MAY-16 5E7H 1 JRNL REVDAT 1 04-MAY-16 5E7H 0 JRNL AUTH A.S.TAUZIN,K.J.KWIATKOWSKI,N.I.ORLOVSKY,C.J.SMITH, JRNL AUTH 2 A.L.CREAGH,C.A.HAYNES,Z.WAWRZAK,H.BRUMER,N.M.KOROPATKIN JRNL TITL MOLECULAR DISSECTION OF XYLOGLUCAN RECOGNITION IN A JRNL TITL 2 PROMINENT HUMAN GUT SYMBIONT. JRNL REF MBIO V. 7 02134 2016 JRNL REFN ESSN 2150-7511 JRNL PMID 27118585 JRNL DOI 10.1128/MBIO.02134-15 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 62808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.190 REMARK 3 FREE R VALUE TEST SET COUNT : 1974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.6929 - 4.7047 0.99 4260 147 0.2013 0.2075 REMARK 3 2 4.7047 - 3.7363 1.00 4281 142 0.1415 0.1711 REMARK 3 3 3.7363 - 3.2646 1.00 4275 143 0.1547 0.1672 REMARK 3 4 3.2646 - 2.9664 1.00 4261 139 0.1634 0.1639 REMARK 3 5 2.9664 - 2.7540 1.00 4284 140 0.1681 0.1929 REMARK 3 6 2.7540 - 2.5917 1.00 4250 141 0.1524 0.1838 REMARK 3 7 2.5917 - 2.4619 0.99 4270 145 0.1321 0.1415 REMARK 3 8 2.4619 - 2.3548 0.99 4213 141 0.1451 0.1842 REMARK 3 9 2.3548 - 2.2642 0.99 4289 142 0.1303 0.1322 REMARK 3 10 2.2642 - 2.1861 0.99 4229 139 0.1420 0.1589 REMARK 3 11 2.1861 - 2.1177 0.99 4243 141 0.1371 0.1685 REMARK 3 12 2.1177 - 2.0572 0.99 4271 140 0.1387 0.1637 REMARK 3 13 2.0572 - 2.0031 0.99 4210 139 0.1379 0.1443 REMARK 3 14 2.0031 - 1.9542 0.99 4239 135 0.1317 0.1391 REMARK 3 15 1.9542 - 1.9098 0.99 4211 142 0.1238 0.1341 REMARK 3 16 1.9098 - 1.8692 0.99 4240 137 0.1424 0.1729 REMARK 3 17 1.8692 - 1.8318 0.98 4199 139 0.1386 0.1505 REMARK 3 18 1.8318 - 1.7972 0.98 4229 134 0.1546 0.1786 REMARK 3 19 1.7972 - 1.7651 0.98 4223 132 0.1540 0.1830 REMARK 3 20 1.7651 - 1.7352 0.98 4172 137 0.1640 0.1844 REMARK 3 21 1.7352 - 1.7072 0.98 4185 136 0.1709 0.2015 REMARK 3 22 1.7072 - 1.6809 0.98 4230 139 0.1702 0.1914 REMARK 3 23 1.6809 - 1.6562 0.98 4186 137 0.1689 0.1717 REMARK 3 24 1.6562 - 1.6329 0.98 4203 143 0.1721 0.2022 REMARK 3 25 1.6329 - 1.6108 0.98 4134 138 0.1693 0.1881 REMARK 3 26 1.6108 - 1.5899 0.98 4185 137 0.1961 0.2039 REMARK 3 27 1.5899 - 1.5700 0.97 4189 137 0.2153 0.2350 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2051 REMARK 3 ANGLE : 1.182 2799 REMARK 3 CHIRALITY : 0.058 324 REMARK 3 PLANARITY : 0.007 362 REMARK 3 DIHEDRAL : 12.822 697 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 0.0476 37.0201 -3.4980 REMARK 3 T TENSOR REMARK 3 T11: 0.1116 T22: 0.1054 REMARK 3 T33: 0.1249 T12: -0.0136 REMARK 3 T13: -0.0089 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.5248 L22: 0.6538 REMARK 3 L33: 1.6662 L12: 0.1475 REMARK 3 L13: -0.4332 L23: -0.4088 REMARK 3 S TENSOR REMARK 3 S11: 0.0572 S12: 0.0382 S13: -0.0204 REMARK 3 S21: -0.0795 S22: -0.0166 S23: 0.0204 REMARK 3 S31: 0.1816 S32: -0.0250 S33: -0.0400 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E7H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214489. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62808 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 30.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 21.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.03 REMARK 200 R MERGE FOR SHELL (I) : 0.77480 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5E7G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M SODIUM FORMATE, 0.1M SODIUM REMARK 280 ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.18667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 134.37333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 100.78000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 167.96667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.59333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.18667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 134.37333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 167.96667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 100.78000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.59333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 509 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 713 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 875 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 660 O HOH A 674 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 652 O HOH A 803 8665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 320 116.18 -161.87 REMARK 500 TYR A 345 -50.91 74.20 REMARK 500 SER A 361 62.77 36.50 REMARK 500 TRP A 365 -90.35 -133.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 508 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 321 O REMARK 620 2 ASN A 348 O 160.5 REMARK 620 3 THR A 350 O 73.9 102.9 REMARK 620 4 ASP A 482 OD1 73.1 126.0 82.3 REMARK 620 5 ASP A 482 OD2 120.5 77.1 81.9 50.0 REMARK 620 6 HOH A 747 O 113.6 72.8 168.9 91.9 87.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 509 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 456 O REMARK 620 2 LEU A 456 O 0.0 REMARK 620 3 ASN A 459 OD1 71.6 71.6 REMARK 620 4 ASN A 459 OD1 71.6 71.6 0.0 REMARK 620 5 HOH A 713 O 64.3 64.3 79.3 79.3 REMARK 620 6 HOH A 713 O 64.3 64.3 79.3 79.3 0.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 509 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5E75 RELATED DB: PDB REMARK 900 RELATED ID: 5E76 RELATED DB: PDB REMARK 900 RELATED ID: 5E7G RELATED DB: PDB DBREF 5E7H A 230 489 UNP A7LXT4 Y2650_BACO1 230 489 SEQRES 1 A 260 PRO LYS PRO VAL VAL THR ALA VAL SER SER THR MET PRO SEQRES 2 A 260 VAL VAL GLY SER THR VAL THR ILE THR GLY GLN ASN PHE SEQRES 3 A 260 ILE GLU VAL SER ARG VAL ASN ILE ASN GLY GLU PHE ASP SEQRES 4 A 260 ILE PRO VAL GLY ASP ILE THR THR SER ASN THR PHE ASP SEQRES 5 A 260 GLU ILE SER PHE VAL LEU PRO GLN ALA PRO THR GLN SER SEQRES 6 A 260 GLY HIS ILE SER VAL THR ALA ILE GLY GLY THR VAL GLU SEQRES 7 A 260 SER ALA GLU ILE PHE TYR PRO LEU GLU ASN VAL ILE LEU SEQRES 8 A 260 ASN TYR ASP GLY ILE GLY SER HIS VAL TRP GLY ASP CYS SEQRES 9 A 260 SER PHE VAL VAL ALA ASP GLY SER SER ALA PRO TYR VAL SEQRES 10 A 260 SER ASN GLY THR CYS LEU GLY ILE THR GLY THR VAL SER SEQRES 11 A 260 ALA SER ASN TYR TRP TRP LYS GLN SER TYR SER ASN ALA SEQRES 12 A 260 GLN TRP VAL ASN THR SER ILE ILE PRO GLY ASN ILE PRO SEQRES 13 A 260 ILE ASP ASP LEU LYS LEU GLN PHE GLU CYS PHE VAL LYS SEQRES 14 A 260 GLU VAL PHE THR GLY PRO VAL PHE GLN ILE ALA MET CYS SEQRES 15 A 260 GLU ASN PHE ASP ALA ALA LEU ASN GLY TYR VAL PRO VAL SEQRES 16 A 260 SER SER PHE THR GLY LYS THR GLU THR GLY LYS TRP MET SEQRES 17 A 260 GLN CYS SER VAL SER LEU SER SER VAL VAL ALA ASP ALA SEQRES 18 A 260 THR TYR GLN ASP PHE LEU ASN ARG ASN SER THR HIS ILE SEQRES 19 A 260 GLY VAL TYR ALA THR ASN PRO GLY SER SER GLN ALA THR SEQRES 20 A 260 ILE GLU VAL TYR PHE ASP ASN PHE ARG ILE VAL ARG LYS HET FMT A 501 4 HET FMT A 502 4 HET FMT A 503 4 HET FMT A 504 4 HET FMT A 505 4 HET ACT A 506 7 HET ACT A 507 7 HET NA A 508 1 HET NA A 509 1 HETNAM FMT FORMIC ACID HETNAM ACT ACETATE ION HETNAM NA SODIUM ION FORMUL 2 FMT 5(C H2 O2) FORMUL 7 ACT 2(C2 H3 O2 1-) FORMUL 9 NA 2(NA 1+) FORMUL 11 HOH *318(H2 O) HELIX 1 AA1 PRO A 270 ILE A 274 5 5 HELIX 2 AA2 PRO A 314 GLU A 316 5 3 HELIX 3 AA3 PRO A 385 ASP A 387 5 3 HELIX 4 AA4 ASN A 413 ALA A 417 5 5 HELIX 5 AA5 SER A 444 VAL A 446 5 3 HELIX 6 AA6 THR A 451 ASN A 457 1 7 SHEET 1 AA1 4 VAL A 233 VAL A 237 0 SHEET 2 AA1 4 THR A 247 GLN A 253 -1 O THR A 251 N THR A 235 SHEET 3 AA1 4 GLU A 282 VAL A 286 -1 O PHE A 285 N VAL A 248 SHEET 4 AA1 4 THR A 275 THR A 276 -1 N THR A 275 O SER A 284 SHEET 1 AA2 4 PHE A 267 ILE A 269 0 SHEET 2 AA2 4 ARG A 260 ILE A 263 -1 N ILE A 263 O PHE A 267 SHEET 3 AA2 4 ILE A 297 ALA A 301 -1 O THR A 300 N ARG A 260 SHEET 4 AA2 4 GLY A 304 GLU A 307 -1 O GLY A 304 N ALA A 301 SHEET 1 AA3 4 VAL A 318 LEU A 320 0 SHEET 2 AA3 4 ALA A 475 ARG A 488 -1 O PHE A 484 N ILE A 319 SHEET 3 AA3 4 THR A 350 VAL A 358 -1 N ILE A 354 O VAL A 479 SHEET 4 AA3 4 SER A 334 VAL A 337 -1 N SER A 334 O GLY A 353 SHEET 1 AA4 4 VAL A 318 LEU A 320 0 SHEET 2 AA4 4 ALA A 475 ARG A 488 -1 O PHE A 484 N ILE A 319 SHEET 3 AA4 4 LEU A 389 VAL A 397 -1 N GLN A 392 O ARG A 485 SHEET 4 AA4 4 TRP A 436 SER A 442 -1 O CYS A 439 N PHE A 393 SHEET 1 AA5 5 SER A 327 TRP A 330 0 SHEET 2 AA5 5 ASN A 362 ASN A 371 -1 O TYR A 369 N TRP A 330 SHEET 3 AA5 5 HIS A 462 ASN A 469 -1 O ALA A 467 N LYS A 366 SHEET 4 AA5 5 VAL A 405 MET A 410 -1 N ALA A 409 O GLY A 464 SHEET 5 AA5 5 LEU A 418 TYR A 421 -1 O TYR A 421 N PHE A 406 LINK O ASN A 321 NA NA A 508 1555 1555 2.78 LINK O ASN A 348 NA NA A 508 1555 1555 2.56 LINK O THR A 350 NA NA A 508 1555 1555 2.54 LINK O LEU A 456 NA NA A 509 1555 1555 2.91 LINK O LEU A 456 NA NA A 509 1555 12565 2.91 LINK OD1 ASN A 459 NA NA A 509 1555 1555 2.70 LINK OD1 ASN A 459 NA NA A 509 1555 12565 2.70 LINK OD1 ASP A 482 NA NA A 508 1555 1555 2.64 LINK OD2 ASP A 482 NA NA A 508 1555 1555 2.48 LINK NA NA A 508 O HOH A 747 1555 1555 2.62 LINK NA NA A 509 O HOH A 713 1555 1555 3.01 LINK NA NA A 509 O HOH A 713 1555 12565 3.01 CISPEP 1 ALA A 343 PRO A 344 0 8.84 SITE 1 AC1 1 ARG A 458 SITE 1 AC2 8 SER A 342 ALA A 343 TYR A 345 ASN A 383 SITE 2 AC2 8 LYS A 398 FMT A 503 HOH A 621 HOH A 821 SITE 1 AC3 5 ASN A 383 LYS A 398 FMT A 502 HOH A 813 SITE 2 AC3 5 HOH A 869 SITE 1 AC4 3 ASN A 376 HOH A 620 HOH A 801 SITE 1 AC5 4 ASN A 321 ASP A 323 HOH A 739 HOH A 788 SITE 1 AC6 5 GLU A 412 ASN A 413 PHE A 414 ASP A 415 SITE 2 AC6 5 HOH A 789 SITE 1 AC7 3 GLY A 356 THR A 357 LYS A 366 SITE 1 AC8 6 ASN A 321 ASP A 323 ASN A 348 THR A 350 SITE 2 AC8 6 ASP A 482 HOH A 747 SITE 1 AC9 3 LEU A 456 ASN A 459 HOH A 713 CRYST1 87.090 87.090 201.560 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011482 0.006629 0.000000 0.00000 SCALE2 0.000000 0.013259 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004961 0.00000