HEADER OXYGEN TRANSPORT 13-OCT-15 5E83
TITLE CRYSTAL STRUCTURE OF CARBONMONOXY HEMOGLOBIN S (LIGANDED SICKLE CELL
TITLE 2 HEMOGLOBIN) COMPLEXED WITH GBT440, CO-CRYSTALLIZATION EXPERIMENT
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HEMOGLOBIN SUBUNIT ALPHA;
COMPND 3 CHAIN: A, C;
COMPND 4 SYNONYM: ALPHA-GLOBIN,HEMOGLOBIN ALPHA CHAIN;
COMPND 5 MOL_ID: 2;
COMPND 6 MOLECULE: HEMOGLOBIN SUBUNIT BETA;
COMPND 7 CHAIN: B, D;
COMPND 8 SYNONYM: BETA-GLOBIN,HEMOGLOBIN BETA CHAIN
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 MOL_ID: 2;
SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 7 ORGANISM_COMMON: HUMAN;
SOURCE 8 ORGANISM_TAXID: 9606
KEYWDS MUTANT HUMAN HEMOGLOBIN S[BETAE6V], R2 QUATERNARY STATE, OXYGEN
KEYWDS 2 TRANSPORT
EXPDTA X-RAY DIFFRACTION
AUTHOR L.PATSKOVSKA,Y.PATSKOVSKY,J.B.BONANNO,S.C.ALMO
REVDAT 7 20-NOV-24 5E83 1 REMARK
REVDAT 6 27-SEP-23 5E83 1 LINK
REVDAT 5 29-AUG-18 5E83 1 COMPND SEQADV
REVDAT 4 22-NOV-17 5E83 1 REMARK
REVDAT 3 05-OCT-16 5E83 1 JRNL
REVDAT 2 10-AUG-16 5E83 1 JRNL
REVDAT 1 20-JUL-16 5E83 0
JRNL AUTH D.OKSENBERG,K.DUFU,M.P.PATEL,C.CHUANG,Z.LI,Q.XU,
JRNL AUTH 2 A.SILVA-GARCIA,C.ZHOU,A.HUTCHALEELAHA,L.PATSKOVSKA,
JRNL AUTH 3 Y.PATSKOVSKY,S.C.ALMO,U.SINHA,B.W.METCALF,D.R.ARCHER
JRNL TITL GBT440 INCREASES HAEMOGLOBIN OXYGEN AFFINITY, REDUCES
JRNL TITL 2 SICKLING AND PROLONGS RBC HALF-LIFE IN A MURINE MODEL OF
JRNL TITL 3 SICKLE CELL DISEASE.
JRNL REF BR.J.HAEMATOL. V. 175 141 2016
JRNL REFN ISSN 0007-1048
JRNL PMID 27378309
JRNL DOI 10.1111/BJH.14214
REMARK 2
REMARK 2 RESOLUTION. 1.80 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.7.0029
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.71
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6
REMARK 3 NUMBER OF REFLECTIONS : 53969
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.178
REMARK 3 R VALUE (WORKING SET) : 0.177
REMARK 3 FREE R VALUE : 0.208
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100
REMARK 3 FREE R VALUE TEST SET COUNT : 1719
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85
REMARK 3 REFLECTION IN BIN (WORKING SET) : 3900
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.63
REMARK 3 BIN R VALUE (WORKING SET) : 0.2660
REMARK 3 BIN FREE R VALUE SET COUNT : 120
REMARK 3 BIN FREE R VALUE : 0.3130
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 4380
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 231
REMARK 3 SOLVENT ATOMS : 399
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.13
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -1.36000
REMARK 3 B22 (A**2) : 4.58000
REMARK 3 B33 (A**2) : -3.22000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.125
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.791
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4824 ; 0.006 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 4554 ; 0.001 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6608 ; 1.120 ; 2.015
REMARK 3 BOND ANGLES OTHERS (DEGREES): 10452 ; 0.728 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 586 ; 4.538 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;33.982 ;23.855
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 714 ;12.677 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;11.334 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 724 ; 0.090 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5437 ; 0.005 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): 1142 ; 0.003 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2
REMARK 3
REMARK 3 NCS GROUP NUMBER : 1
REMARK 3 CHAIN NAMES : A C
REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1
REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE
REMARK 3 1 A 1 A 143 4
REMARK 3 1 C 1 C 143 4
REMARK 3 GROUP CHAIN COUNT RMS WEIGHT
REMARK 3 MEDIUM POSITIONAL 1 A (A): 2166 ; 0.470 ; 5.000
REMARK 3 MEDIUM THERMAL 1 A (A**2): 2166 ; 3.480 ; 2.000
REMARK 3
REMARK 3 NCS GROUP NUMBER : 2
REMARK 3 CHAIN NAMES : B D
REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1
REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE
REMARK 3 1 B 1 B 148 4
REMARK 3 1 D 1 D 148 4
REMARK 3 GROUP CHAIN COUNT RMS WEIGHT
REMARK 3 MEDIUM POSITIONAL 2 B (A): 2301 ; 0.540 ; 5.000
REMARK 3 MEDIUM THERMAL 2 B (A**2): 2301 ; 3.630 ; 2.000
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 4
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 2
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 1 A 141
REMARK 3 RESIDUE RANGE : A 201 A 203
REMARK 3 ORIGIN FOR THE GROUP (A): 23.857 7.822 36.269
REMARK 3 T TENSOR
REMARK 3 T11: 0.3505 T22: 0.0283
REMARK 3 T33: 0.2602 T12: -0.0083
REMARK 3 T13: -0.0141 T23: -0.0036
REMARK 3 L TENSOR
REMARK 3 L11: 1.9867 L22: 2.4549
REMARK 3 L33: 3.2647 L12: -0.1653
REMARK 3 L13: 1.0337 L23: -0.1660
REMARK 3 S TENSOR
REMARK 3 S11: -0.0743 S12: -0.1362 S13: 0.0588
REMARK 3 S21: 0.2296 S22: 0.0849 S23: -0.0959
REMARK 3 S31: -0.2990 S32: 0.1396 S33: -0.0106
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 2
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 1 B 146
REMARK 3 RESIDUE RANGE : B 201 B 202
REMARK 3 ORIGIN FOR THE GROUP (A): 0.879 7.681 28.535
REMARK 3 T TENSOR
REMARK 3 T11: 0.3004 T22: 0.2715
REMARK 3 T33: 0.3856 T12: 0.0988
REMARK 3 T13: 0.0429 T23: -0.0125
REMARK 3 L TENSOR
REMARK 3 L11: 2.6204 L22: 1.9389
REMARK 3 L33: 3.3847 L12: -0.1379
REMARK 3 L13: 0.2587 L23: -0.5891
REMARK 3 S TENSOR
REMARK 3 S11: 0.0126 S12: -0.0688 S13: -0.1678
REMARK 3 S21: 0.0202 S22: 0.0093 S23: 0.3441
REMARK 3 S31: -0.1326 S32: -0.8178 S33: -0.0219
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 NUMBER OF COMPONENTS GROUP : 2
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : C 1 C 141
REMARK 3 RESIDUE RANGE : C 201 C 202
REMARK 3 ORIGIN FOR THE GROUP (A): 24.305 7.640 6.152
REMARK 3 T TENSOR
REMARK 3 T11: 0.3199 T22: 0.2894
REMARK 3 T33: 0.2552 T12: -0.0485
REMARK 3 T13: 0.0231 T23: -0.0166
REMARK 3 L TENSOR
REMARK 3 L11: 1.8830 L22: 2.0536
REMARK 3 L33: 2.8943 L12: -0.0402
REMARK 3 L13: 0.0703 L23: 0.4100
REMARK 3 S TENSOR
REMARK 3 S11: 0.0401 S12: 0.5439 S13: 0.1072
REMARK 3 S21: -0.2001 S22: -0.0096 S23: -0.0994
REMARK 3 S31: -0.5502 S32: 0.2848 S33: -0.0305
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 NUMBER OF COMPONENTS GROUP : 2
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : D 1 D 146
REMARK 3 RESIDUE RANGE : D 201 D 202
REMARK 3 ORIGIN FOR THE GROUP (A): 19.803 -14.931 13.784
REMARK 3 T TENSOR
REMARK 3 T11: 0.3234 T22: 0.1291
REMARK 3 T33: 0.4141 T12: 0.0320
REMARK 3 T13: 0.0115 T23: -0.1292
REMARK 3 L TENSOR
REMARK 3 L11: 2.3721 L22: 1.5848
REMARK 3 L33: 3.8706 L12: -0.2573
REMARK 3 L13: 0.6969 L23: 0.1294
REMARK 3 S TENSOR
REMARK 3 S11: -0.0643 S12: 0.1251 S13: -0.4849
REMARK 3 S21: 0.2280 S22: 0.0843 S23: 0.0330
REMARK 3 S31: 0.5521 S32: -0.0530 S33: -0.0200
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : BABINET MODEL WITH MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.30
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS U VALUES : WITH TLS ADDED
REMARK 4
REMARK 4 5E83 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-15.
REMARK 100 THE DEPOSITION ID IS D_1000214439.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 18-JUL-13
REMARK 200 TEMPERATURE (KELVIN) : 100.0
REMARK 200 PH : 7.4
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : NSLS
REMARK 200 BEAMLINE : X29A
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.075
REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL
REMARK 200 OPTICS : MIRRORS
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56423
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1
REMARK 200 DATA REDUNDANCY : 7.700
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.06300
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82
REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6
REMARK 200 DATA REDUNDANCY IN SHELL : 7.20
REMARK 200 R MERGE FOR SHELL (I) : 0.57000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRY 1NEJ
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 48.41
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 25% PEG4000, PH 7.4, 40 MM
REMARK 280 NACL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.38850
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.13000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.55200
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.13000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.38850
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.55200
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 FE HEM A 201 C CMO A 202 1.88
REMARK 500 FE HEM D 201 C CMO D 202 1.89
REMARK 500 FE HEM B 201 C CMO B 202 1.89
REMARK 500 FE HEM C 201 C CMO C 202 1.95
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG C 92 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 75 35.61 -144.36
REMARK 500 ASP C 75 52.97 -145.11
REMARK 500 HIS D 77 44.57 -144.05
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 HEM A 201 FE
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 87 NE2
REMARK 620 2 HEM A 201 NA 89.3
REMARK 620 3 HEM A 201 NB 87.7 90.2
REMARK 620 4 HEM A 201 NC 91.3 178.6 88.6
REMARK 620 5 HEM A 201 ND 92.9 89.7 179.3 91.6
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 HEM B 201 FE
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS B 92 NE2
REMARK 620 2 HEM B 201 NA 93.2
REMARK 620 3 HEM B 201 NB 88.6 89.2
REMARK 620 4 HEM B 201 NC 87.4 178.8 89.8
REMARK 620 5 HEM B 201 ND 91.6 91.3 179.5 89.7
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 HEM C 201 FE
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS C 87 NE2
REMARK 620 2 HEM C 201 NA 92.4
REMARK 620 3 HEM C 201 NB 88.2 88.5
REMARK 620 4 HEM C 201 NC 88.4 178.6 90.3
REMARK 620 5 HEM C 201 ND 92.8 91.7 179.0 89.5
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 HEM D 201 FE
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS D 92 NE2
REMARK 620 2 HEM D 201 NA 92.0
REMARK 620 3 HEM D 201 NB 90.1 89.4
REMARK 620 4 HEM D 201 NC 88.5 178.7 89.4
REMARK 620 5 HEM D 201 ND 90.5 91.0 179.3 90.2
REMARK 620 N 1 2 3 4
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CMO A 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 204
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CMO B 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue HEM C 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CMO C 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue HEM D 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CMO D 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 203
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 204
DBREF 5E83 A 1 141 UNP P69905 HBA_HUMAN 2 142
DBREF 5E83 B 1 146 UNP P68871 HBB_HUMAN 2 147
DBREF 5E83 C 1 141 UNP P69905 HBA_HUMAN 2 142
DBREF 5E83 D 1 146 UNP P68871 HBB_HUMAN 2 147
SEQADV 5E83 VAL B 6 UNP P68871 GLU 7 CONFLICT
SEQADV 5E83 VAL D 6 UNP P68871 GLU 7 CONFLICT
SEQRES 1 A 141 VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA ALA
SEQRES 2 A 141 TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY ALA
SEQRES 3 A 141 GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR THR
SEQRES 4 A 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER
SEQRES 5 A 141 ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP ALA
SEQRES 6 A 141 LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO ASN
SEQRES 7 A 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU
SEQRES 8 A 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS
SEQRES 9 A 141 LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU PHE
SEQRES 10 A 141 THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU ALA
SEQRES 11 A 141 SER VAL SER THR VAL LEU THR SER LYS TYR ARG
SEQRES 1 B 146 VAL HIS LEU THR PRO VAL GLU LYS SER ALA VAL THR ALA
SEQRES 2 B 146 LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY GLU
SEQRES 3 B 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN
SEQRES 4 B 146 ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO ASP
SEQRES 5 B 146 ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS
SEQRES 6 B 146 LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS LEU
SEQRES 7 B 146 ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU LEU
SEQRES 8 B 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG
SEQRES 9 B 146 LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS HIS
SEQRES 10 B 146 PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA TYR
SEQRES 11 B 146 GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS
SEQRES 12 B 146 LYS TYR HIS
SEQRES 1 C 141 VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA ALA
SEQRES 2 C 141 TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY ALA
SEQRES 3 C 141 GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR THR
SEQRES 4 C 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER
SEQRES 5 C 141 ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP ALA
SEQRES 6 C 141 LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO ASN
SEQRES 7 C 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU
SEQRES 8 C 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS
SEQRES 9 C 141 LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU PHE
SEQRES 10 C 141 THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU ALA
SEQRES 11 C 141 SER VAL SER THR VAL LEU THR SER LYS TYR ARG
SEQRES 1 D 146 VAL HIS LEU THR PRO VAL GLU LYS SER ALA VAL THR ALA
SEQRES 2 D 146 LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY GLU
SEQRES 3 D 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN
SEQRES 4 D 146 ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO ASP
SEQRES 5 D 146 ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS
SEQRES 6 D 146 LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS LEU
SEQRES 7 D 146 ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU LEU
SEQRES 8 D 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG
SEQRES 9 D 146 LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS HIS
SEQRES 10 D 146 PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA TYR
SEQRES 11 D 146 GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS
SEQRES 12 D 146 LYS TYR HIS
HET HEM A 201 43
HET CMO A 202 2
HET 5L7 A 203 48
HET GOL A 204 6
HET HEM B 201 43
HET CMO B 202 2
HET HEM C 201 43
HET CMO C 202 2
HET UNL C 203 9
HET HEM D 201 43
HET CMO D 202 2
HET GOL D 203 6
HET GOL D 204 6
HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE
HETNAM CMO CARBON MONOXIDE
HETNAM 5L7 2-METHYL-3-({2-[1-(PROPAN-2-YL)-1H-PYRAZOL-5-
HETNAM 2 5L7 YL]PYRIDIN-3-YL}METHOXY)PHENOL
HETNAM GOL GLYCEROL
HETNAM UNL UNKNOWN LIGAND
HETSYN HEM HEME
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 5 HEM 4(C34 H32 FE N4 O4)
FORMUL 6 CMO 4(C O)
FORMUL 7 5L7 C19 H21 N3 O2
FORMUL 8 GOL 3(C3 H8 O3)
FORMUL 18 HOH *399(H2 O)
HELIX 1 AA1 SER A 3 GLY A 18 1 16
HELIX 2 AA2 HIS A 20 PHE A 36 1 17
HELIX 3 AA3 PRO A 37 PHE A 43 5 7
HELIX 4 AA4 SER A 52 HIS A 72 1 21
HELIX 5 AA5 ASP A 75 LEU A 80 1 6
HELIX 6 AA6 LEU A 80 HIS A 89 1 10
HELIX 7 AA7 ASP A 94 LEU A 113 1 20
HELIX 8 AA8 THR A 118 THR A 137 1 20
HELIX 9 AA9 THR B 4 LYS B 17 1 14
HELIX 10 AB1 GLU B 22 TYR B 35 1 14
HELIX 11 AB2 PRO B 36 GLY B 46 5 11
HELIX 12 AB3 THR B 50 ASN B 57 1 8
HELIX 13 AB4 ASN B 57 HIS B 77 1 21
HELIX 14 AB5 ASN B 80 PHE B 85 1 6
HELIX 15 AB6 PHE B 85 LYS B 95 1 11
HELIX 16 AB7 PRO B 100 GLY B 119 1 20
HELIX 17 AB8 LYS B 120 PHE B 122 5 3
HELIX 18 AB9 THR B 123 ALA B 142 1 20
HELIX 19 AC1 HIS B 143 HIS B 146 5 4
HELIX 20 AC2 SER C 3 LYS C 16 1 14
HELIX 21 AC3 VAL C 17 ALA C 19 5 3
HELIX 22 AC4 HIS C 20 PHE C 36 1 17
HELIX 23 AC5 PRO C 37 PHE C 43 5 7
HELIX 24 AC6 SER C 52 HIS C 72 1 21
HELIX 25 AC7 ASP C 75 LEU C 80 1 6
HELIX 26 AC8 LEU C 80 HIS C 89 1 10
HELIX 27 AC9 ASP C 94 LEU C 113 1 20
HELIX 28 AD1 THR C 118 SER C 138 1 21
HELIX 29 AD2 THR D 4 GLY D 16 1 13
HELIX 30 AD3 GLU D 22 TYR D 35 1 14
HELIX 31 AD4 PRO D 36 GLY D 46 5 11
HELIX 32 AD5 THR D 50 GLY D 56 1 7
HELIX 33 AD6 ASN D 57 ALA D 76 1 20
HELIX 34 AD7 HIS D 77 ASP D 79 5 3
HELIX 35 AD8 ASN D 80 ASP D 94 1 15
HELIX 36 AD9 PRO D 100 GLY D 119 1 20
HELIX 37 AE1 LYS D 120 PHE D 122 5 3
HELIX 38 AE2 THR D 123 ALA D 142 1 20
HELIX 39 AE3 HIS D 143 HIS D 146 5 4
LINK N VAL A 1 C7 A5L7 A 203 1555 1555 1.32
LINK C7 B5L7 A 203 N VAL C 1 1555 1555 1.34
LINK NZ LYS C 139 C7 UNL C 203 1555 1555 1.42
LINK NE2 HIS A 87 FE HEM A 201 1555 1555 2.11
LINK NE2 HIS B 92 FE HEM B 201 1555 1555 2.08
LINK NE2 HIS C 87 FE HEM C 201 1555 1555 2.10
LINK NE2 HIS D 92 FE HEM D 201 1555 1555 2.07
SITE 1 AC1 17 TYR A 42 PHE A 43 HIS A 45 PHE A 46
SITE 2 AC1 17 HIS A 58 LYS A 61 LEU A 83 LEU A 86
SITE 3 AC1 17 HIS A 87 LEU A 91 ASN A 97 PHE A 98
SITE 4 AC1 17 LEU A 101 LEU A 136 CMO A 202 HOH A 302
SITE 5 AC1 17 HOH A 311
SITE 1 AC2 4 LEU A 29 HIS A 58 VAL A 62 HEM A 201
SITE 1 AC3 7 LYS A 139 PRO D 36 GLN D 39 LEU D 48
SITE 2 AC3 7 THR D 50 PRO D 51 HOH D 321
SITE 1 AC4 12 PHE B 41 PHE B 42 HIS B 63 LEU B 88
SITE 2 AC4 12 LEU B 91 HIS B 92 LEU B 96 ASN B 102
SITE 3 AC4 12 PHE B 103 LEU B 106 CMO B 202 HOH B 304
SITE 1 AC5 3 HIS B 63 VAL B 67 HEM B 201
SITE 1 AC6 16 TYR C 42 PHE C 43 HIS C 45 PHE C 46
SITE 2 AC6 16 HIS C 58 LYS C 61 ALA C 65 LEU C 83
SITE 3 AC6 16 LEU C 86 HIS C 87 LEU C 91 ASN C 97
SITE 4 AC6 16 PHE C 98 LEU C 101 CMO C 202 HOH C 340
SITE 1 AC7 4 PHE C 43 HIS C 58 VAL C 62 HEM C 201
SITE 1 AC8 14 PHE D 41 PHE D 42 PHE D 45 HIS D 63
SITE 2 AC8 14 LEU D 88 LEU D 91 HIS D 92 LEU D 96
SITE 3 AC8 14 ASN D 102 PHE D 103 LEU D 106 LEU D 141
SITE 4 AC8 14 CMO D 202 HOH D 340
SITE 1 AC9 3 HIS D 63 VAL D 67 HEM D 201
SITE 1 AD1 6 PRO D 100 ARG D 104 ALA D 138 ASN D 139
SITE 2 AD1 6 HOH D 301 HOH D 304
SITE 1 AD2 8 HIS D 2 LEU D 3 LEU D 78 LEU D 81
SITE 2 AD2 8 GLY D 136 HOH D 323 HOH D 331 HOH D 337
CRYST1 58.777 59.104 170.260 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017013 0.000000 0.000000 0.00000
SCALE2 0.000000 0.016919 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005873 0.00000
MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1
MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1
MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1
MTRIX1 2 0.189167 0.981702 0.021821 11.52547 1
MTRIX2 2 0.981764 -0.189512 0.014997 -14.73523 1
MTRIX3 2 0.018858 0.018586 -0.999649 42.12014 1