HEADER DNA BINDING PROTEIN 14-OCT-15 5E8G TITLE CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF HUMAN TRANSCRIPTION TITLE 2 FACTOR FLI1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRIEND LEUKEMIA INTEGRATION 1 TRANSCRIPTION FACTOR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 276-399; COMPND 5 SYNONYM: PROTO-ONCOGENE FLI-1,TRANSCRIPTION FACTOR ERGB; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FLI1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TRANSCRIPTION, DNA BINDING, EWING SARCOMA, WINGED HELIX, ETS FAMILY, KEYWDS 2 DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.HOU,O.V.TSODIKOV REVDAT 5 27-SEP-23 5E8G 1 LINK REVDAT 4 20-NOV-19 5E8G 1 JRNL REMARK LINK REVDAT 3 30-DEC-15 5E8G 1 JRNL REVDAT 2 16-DEC-15 5E8G 1 JRNL REVDAT 1 09-DEC-15 5E8G 0 JRNL AUTH C.HOU,O.V.TSODIKOV JRNL TITL STRUCTURAL BASIS FOR DIMERIZATION AND DNA BINDING OF JRNL TITL 2 TRANSCRIPTION FACTOR FLI1. JRNL REF BIOCHEMISTRY V. 54 7365 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26618620 JRNL DOI 10.1021/ACS.BIOCHEM.5B01121 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16370 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 869 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1201 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3088 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : -0.13000 REMARK 3 B33 (A**2) : 0.42000 REMARK 3 B12 (A**2) : -0.13000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.479 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.297 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.223 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.739 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3176 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2932 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4264 ; 1.233 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6728 ; 0.748 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 368 ; 5.236 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;36.536 ;23.571 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 564 ;17.787 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.319 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 420 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3596 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 812 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1484 ; 3.734 ; 6.678 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1483 ; 3.713 ; 6.676 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1848 ; 5.858 ; 9.998 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1849 ; 5.857 ;10.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1692 ; 3.814 ; 7.142 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1693 ; 3.813 ; 7.143 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2417 ; 6.344 ;10.540 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3731 ; 8.995 ;53.648 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3732 ; 8.994 ;53.659 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5E8G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17449 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4IRG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 5.5, 0.1 M REMARK 280 CO2+ SULFATE HEPTAHYDRATE, 24% PEG 4000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 70.27550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.57358 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.38000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 70.27550 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 40.57358 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.38000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 70.27550 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 40.57358 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.38000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 81.14716 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 56.76000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 81.14716 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 56.76000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 81.14716 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 56.76000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 272 REMARK 465 PRO A 273 REMARK 465 HIS A 274 REMARK 465 MET A 275 REMARK 465 PRO A 276 REMARK 465 GLY A 277 REMARK 465 SER A 278 REMARK 465 HIS A 372 REMARK 465 PRO A 373 REMARK 465 THR A 374 REMARK 465 GLU A 375 REMARK 465 SER A 376 REMARK 465 SER A 377 REMARK 465 MET A 378 REMARK 465 TYR A 379 REMARK 465 LYS A 380 REMARK 465 TYR A 381 REMARK 465 PRO A 382 REMARK 465 SER A 383 REMARK 465 ASP A 384 REMARK 465 ILE A 385 REMARK 465 SER A 386 REMARK 465 TYR A 387 REMARK 465 MET A 388 REMARK 465 PRO A 389 REMARK 465 SER A 390 REMARK 465 TYR A 391 REMARK 465 HIS A 392 REMARK 465 ALA A 393 REMARK 465 HIS A 394 REMARK 465 GLN A 395 REMARK 465 GLN A 396 REMARK 465 LYS A 397 REMARK 465 VAL A 398 REMARK 465 ASN A 399 REMARK 465 GLY B 272 REMARK 465 PRO B 273 REMARK 465 HIS B 274 REMARK 465 MET B 275 REMARK 465 PRO B 276 REMARK 465 GLY B 277 REMARK 465 SER B 278 REMARK 465 HIS B 372 REMARK 465 PRO B 373 REMARK 465 THR B 374 REMARK 465 GLU B 375 REMARK 465 SER B 376 REMARK 465 SER B 377 REMARK 465 MET B 378 REMARK 465 TYR B 379 REMARK 465 LYS B 380 REMARK 465 TYR B 381 REMARK 465 PRO B 382 REMARK 465 SER B 383 REMARK 465 ASP B 384 REMARK 465 ILE B 385 REMARK 465 SER B 386 REMARK 465 TYR B 387 REMARK 465 MET B 388 REMARK 465 PRO B 389 REMARK 465 SER B 390 REMARK 465 TYR B 391 REMARK 465 HIS B 392 REMARK 465 ALA B 393 REMARK 465 HIS B 394 REMARK 465 GLN B 395 REMARK 465 GLN B 396 REMARK 465 LYS B 397 REMARK 465 VAL B 398 REMARK 465 ASN B 399 REMARK 465 GLY C 272 REMARK 465 PRO C 273 REMARK 465 HIS C 274 REMARK 465 MET C 275 REMARK 465 PRO C 276 REMARK 465 GLY C 277 REMARK 465 SER C 278 REMARK 465 HIS C 372 REMARK 465 PRO C 373 REMARK 465 THR C 374 REMARK 465 GLU C 375 REMARK 465 SER C 376 REMARK 465 SER C 377 REMARK 465 MET C 378 REMARK 465 TYR C 379 REMARK 465 LYS C 380 REMARK 465 TYR C 381 REMARK 465 PRO C 382 REMARK 465 SER C 383 REMARK 465 ASP C 384 REMARK 465 ILE C 385 REMARK 465 SER C 386 REMARK 465 TYR C 387 REMARK 465 MET C 388 REMARK 465 PRO C 389 REMARK 465 SER C 390 REMARK 465 TYR C 391 REMARK 465 HIS C 392 REMARK 465 ALA C 393 REMARK 465 HIS C 394 REMARK 465 GLN C 395 REMARK 465 GLN C 396 REMARK 465 LYS C 397 REMARK 465 VAL C 398 REMARK 465 ASN C 399 REMARK 465 GLY D 272 REMARK 465 PRO D 273 REMARK 465 HIS D 274 REMARK 465 MET D 275 REMARK 465 PRO D 276 REMARK 465 GLY D 277 REMARK 465 SER D 278 REMARK 465 HIS D 372 REMARK 465 PRO D 373 REMARK 465 THR D 374 REMARK 465 GLU D 375 REMARK 465 SER D 376 REMARK 465 SER D 377 REMARK 465 MET D 378 REMARK 465 TYR D 379 REMARK 465 LYS D 380 REMARK 465 TYR D 381 REMARK 465 PRO D 382 REMARK 465 SER D 383 REMARK 465 ASP D 384 REMARK 465 ILE D 385 REMARK 465 SER D 386 REMARK 465 TYR D 387 REMARK 465 MET D 388 REMARK 465 PRO D 389 REMARK 465 SER D 390 REMARK 465 TYR D 391 REMARK 465 HIS D 392 REMARK 465 ALA D 393 REMARK 465 HIS D 394 REMARK 465 GLN D 395 REMARK 465 GLN D 396 REMARK 465 LYS D 397 REMARK 465 VAL D 398 REMARK 465 ASN D 399 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CO CO A 401 O HOH A 504 1.66 REMARK 500 OD2 ASP A 361 O HOH A 501 1.92 REMARK 500 OD2 ASP C 361 O HOH C 501 1.97 REMARK 500 OD2 ASP D 313 O HOH D 501 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 361 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP B 361 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP D 361 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 326 59.26 25.70 REMARK 500 TYR A 356 9.19 56.64 REMARK 500 SER B 326 63.19 36.89 REMARK 500 TYR B 356 13.89 57.21 REMARK 500 SER C 326 45.60 39.64 REMARK 500 TYR C 356 13.11 57.71 REMARK 500 GLN D 280 50.63 -99.60 REMARK 500 TYR D 341 -55.80 -29.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 401 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 361 OD1 REMARK 620 2 ASP A 361 OD2 59.1 REMARK 620 3 HIS A 363 ND1 153.3 96.2 REMARK 620 4 HOH A 501 O 81.7 60.6 95.1 REMARK 620 5 HOH A 503 O 82.6 84.3 85.2 144.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO C 401 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 502 O REMARK 620 2 ASP C 361 OD1 112.3 REMARK 620 3 ASP C 361 OD2 160.6 59.2 REMARK 620 4 HIS C 363 ND1 96.2 151.5 93.7 REMARK 620 5 HOH C 501 O 97.5 95.5 67.8 80.5 REMARK 620 6 HOH C 503 O 99.5 74.5 94.9 101.4 162.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 401 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 361 OD1 REMARK 620 2 ASP B 361 OD2 60.8 REMARK 620 3 HIS B 363 ND1 152.1 95.2 REMARK 620 4 HOH B 501 O 108.3 84.7 81.1 REMARK 620 5 HOH B 502 O 64.4 86.9 103.1 170.9 REMARK 620 6 HOH C 502 O 108.4 160.1 98.6 83.4 103.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO D 401 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 361 OD1 REMARK 620 2 ASP D 361 OD2 59.5 REMARK 620 3 HIS D 363 ND1 145.0 88.7 REMARK 620 4 HOH D 501 O 118.0 168.3 96.1 REMARK 620 5 HOH D 502 O 60.5 79.1 102.1 110.2 REMARK 620 6 HOH D 503 O 96.4 86.3 95.6 82.6 156.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO D 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5E8I RELATED DB: PDB DBREF 5E8G A 276 399 UNP Q01543 FLI1_HUMAN 276 399 DBREF 5E8G B 276 399 UNP Q01543 FLI1_HUMAN 276 399 DBREF 5E8G C 276 399 UNP Q01543 FLI1_HUMAN 276 399 DBREF 5E8G D 276 399 UNP Q01543 FLI1_HUMAN 276 399 SEQADV 5E8G GLY A 272 UNP Q01543 EXPRESSION TAG SEQADV 5E8G PRO A 273 UNP Q01543 EXPRESSION TAG SEQADV 5E8G HIS A 274 UNP Q01543 EXPRESSION TAG SEQADV 5E8G MET A 275 UNP Q01543 EXPRESSION TAG SEQADV 5E8G GLY B 272 UNP Q01543 EXPRESSION TAG SEQADV 5E8G PRO B 273 UNP Q01543 EXPRESSION TAG SEQADV 5E8G HIS B 274 UNP Q01543 EXPRESSION TAG SEQADV 5E8G MET B 275 UNP Q01543 EXPRESSION TAG SEQADV 5E8G GLY C 272 UNP Q01543 EXPRESSION TAG SEQADV 5E8G PRO C 273 UNP Q01543 EXPRESSION TAG SEQADV 5E8G HIS C 274 UNP Q01543 EXPRESSION TAG SEQADV 5E8G MET C 275 UNP Q01543 EXPRESSION TAG SEQADV 5E8G GLY D 272 UNP Q01543 EXPRESSION TAG SEQADV 5E8G PRO D 273 UNP Q01543 EXPRESSION TAG SEQADV 5E8G HIS D 274 UNP Q01543 EXPRESSION TAG SEQADV 5E8G MET D 275 UNP Q01543 EXPRESSION TAG SEQRES 1 A 128 GLY PRO HIS MET PRO GLY SER GLY GLN ILE GLN LEU TRP SEQRES 2 A 128 GLN PHE LEU LEU GLU LEU LEU SER ASP SER ALA ASN ALA SEQRES 3 A 128 SER CYS ILE THR TRP GLU GLY THR ASN GLY GLU PHE LYS SEQRES 4 A 128 MET THR ASP PRO ASP GLU VAL ALA ARG ARG TRP GLY GLU SEQRES 5 A 128 ARG LYS SER LYS PRO ASN MET ASN TYR ASP LYS LEU SER SEQRES 6 A 128 ARG ALA LEU ARG TYR TYR TYR ASP LYS ASN ILE MET THR SEQRES 7 A 128 LYS VAL HIS GLY LYS ARG TYR ALA TYR LYS PHE ASP PHE SEQRES 8 A 128 HIS GLY ILE ALA GLN ALA LEU GLN PRO HIS PRO THR GLU SEQRES 9 A 128 SER SER MET TYR LYS TYR PRO SER ASP ILE SER TYR MET SEQRES 10 A 128 PRO SER TYR HIS ALA HIS GLN GLN LYS VAL ASN SEQRES 1 B 128 GLY PRO HIS MET PRO GLY SER GLY GLN ILE GLN LEU TRP SEQRES 2 B 128 GLN PHE LEU LEU GLU LEU LEU SER ASP SER ALA ASN ALA SEQRES 3 B 128 SER CYS ILE THR TRP GLU GLY THR ASN GLY GLU PHE LYS SEQRES 4 B 128 MET THR ASP PRO ASP GLU VAL ALA ARG ARG TRP GLY GLU SEQRES 5 B 128 ARG LYS SER LYS PRO ASN MET ASN TYR ASP LYS LEU SER SEQRES 6 B 128 ARG ALA LEU ARG TYR TYR TYR ASP LYS ASN ILE MET THR SEQRES 7 B 128 LYS VAL HIS GLY LYS ARG TYR ALA TYR LYS PHE ASP PHE SEQRES 8 B 128 HIS GLY ILE ALA GLN ALA LEU GLN PRO HIS PRO THR GLU SEQRES 9 B 128 SER SER MET TYR LYS TYR PRO SER ASP ILE SER TYR MET SEQRES 10 B 128 PRO SER TYR HIS ALA HIS GLN GLN LYS VAL ASN SEQRES 1 C 128 GLY PRO HIS MET PRO GLY SER GLY GLN ILE GLN LEU TRP SEQRES 2 C 128 GLN PHE LEU LEU GLU LEU LEU SER ASP SER ALA ASN ALA SEQRES 3 C 128 SER CYS ILE THR TRP GLU GLY THR ASN GLY GLU PHE LYS SEQRES 4 C 128 MET THR ASP PRO ASP GLU VAL ALA ARG ARG TRP GLY GLU SEQRES 5 C 128 ARG LYS SER LYS PRO ASN MET ASN TYR ASP LYS LEU SER SEQRES 6 C 128 ARG ALA LEU ARG TYR TYR TYR ASP LYS ASN ILE MET THR SEQRES 7 C 128 LYS VAL HIS GLY LYS ARG TYR ALA TYR LYS PHE ASP PHE SEQRES 8 C 128 HIS GLY ILE ALA GLN ALA LEU GLN PRO HIS PRO THR GLU SEQRES 9 C 128 SER SER MET TYR LYS TYR PRO SER ASP ILE SER TYR MET SEQRES 10 C 128 PRO SER TYR HIS ALA HIS GLN GLN LYS VAL ASN SEQRES 1 D 128 GLY PRO HIS MET PRO GLY SER GLY GLN ILE GLN LEU TRP SEQRES 2 D 128 GLN PHE LEU LEU GLU LEU LEU SER ASP SER ALA ASN ALA SEQRES 3 D 128 SER CYS ILE THR TRP GLU GLY THR ASN GLY GLU PHE LYS SEQRES 4 D 128 MET THR ASP PRO ASP GLU VAL ALA ARG ARG TRP GLY GLU SEQRES 5 D 128 ARG LYS SER LYS PRO ASN MET ASN TYR ASP LYS LEU SER SEQRES 6 D 128 ARG ALA LEU ARG TYR TYR TYR ASP LYS ASN ILE MET THR SEQRES 7 D 128 LYS VAL HIS GLY LYS ARG TYR ALA TYR LYS PHE ASP PHE SEQRES 8 D 128 HIS GLY ILE ALA GLN ALA LEU GLN PRO HIS PRO THR GLU SEQRES 9 D 128 SER SER MET TYR LYS TYR PRO SER ASP ILE SER TYR MET SEQRES 10 D 128 PRO SER TYR HIS ALA HIS GLN GLN LYS VAL ASN HET CO A 401 1 HET CO B 401 1 HET CO C 401 1 HET CO D 401 1 HETNAM CO COBALT (II) ION FORMUL 5 CO 4(CO 2+) FORMUL 9 HOH *12(H2 O) HELIX 1 AA1 GLN A 282 SER A 292 1 11 HELIX 2 AA2 ASP A 293 ALA A 297 5 5 HELIX 3 AA3 ASP A 313 LYS A 325 1 13 HELIX 4 AA4 ASN A 331 LYS A 345 1 15 HELIX 5 AA5 ASP A 361 LEU A 369 1 9 HELIX 6 AA6 GLN B 282 SER B 292 1 11 HELIX 7 AA7 ASP B 293 ALA B 297 5 5 HELIX 8 AA8 ASP B 313 LYS B 325 1 13 HELIX 9 AA9 ASN B 331 LYS B 345 1 15 HELIX 10 AB1 ASP B 361 LEU B 369 1 9 HELIX 11 AB2 GLN C 282 SER C 292 1 11 HELIX 12 AB3 ASP C 293 ALA C 297 5 5 HELIX 13 AB4 ASP C 313 LYS C 325 1 13 HELIX 14 AB5 ASN C 331 LYS C 345 1 15 HELIX 15 AB6 ASP C 361 LEU C 369 1 9 HELIX 16 AB7 GLN D 282 ASP D 293 1 12 HELIX 17 AB8 SER D 294 ALA D 297 5 4 HELIX 18 AB9 ASP D 313 LYS D 325 1 13 HELIX 19 AC1 ASN D 331 LYS D 345 1 15 HELIX 20 AC2 ASP D 361 LEU D 369 1 9 SHEET 1 AA1 4 THR A 301 TRP A 302 0 SHEET 2 AA1 4 GLU A 308 LYS A 310 -1 O LYS A 310 N THR A 301 SHEET 3 AA1 4 ALA A 357 PHE A 360 -1 O TYR A 358 N PHE A 309 SHEET 4 AA1 4 MET A 348 LYS A 350 -1 N THR A 349 O LYS A 359 SHEET 1 AA2 4 THR B 301 TRP B 302 0 SHEET 2 AA2 4 GLU B 308 LYS B 310 -1 O LYS B 310 N THR B 301 SHEET 3 AA2 4 ALA B 357 PHE B 360 -1 O TYR B 358 N PHE B 309 SHEET 4 AA2 4 MET B 348 LYS B 350 -1 N THR B 349 O LYS B 359 SHEET 1 AA3 4 THR C 301 TRP C 302 0 SHEET 2 AA3 4 GLU C 308 LYS C 310 -1 O LYS C 310 N THR C 301 SHEET 3 AA3 4 ALA C 357 PHE C 360 -1 O TYR C 358 N PHE C 309 SHEET 4 AA3 4 MET C 348 LYS C 350 -1 N THR C 349 O LYS C 359 SHEET 1 AA4 4 THR D 301 TRP D 302 0 SHEET 2 AA4 4 GLU D 308 LYS D 310 -1 O LYS D 310 N THR D 301 SHEET 3 AA4 4 ALA D 357 PHE D 360 -1 O TYR D 358 N PHE D 309 SHEET 4 AA4 4 MET D 348 LYS D 350 -1 N THR D 349 O LYS D 359 LINK OD1 ASP A 361 CO CO A 401 1555 1555 2.47 LINK OD2 ASP A 361 CO CO A 401 1555 1555 1.78 LINK ND1 HIS A 363 CO CO A 401 1555 1555 1.85 LINK CO CO A 401 O HOH A 501 1555 1555 2.01 LINK CO CO A 401 O HOH A 503 1555 1555 2.29 LINK O HOH A 502 CO CO C 401 3675 1555 2.03 LINK OD1 ASP B 361 CO CO B 401 1555 1555 2.41 LINK OD2 ASP B 361 CO CO B 401 1555 1555 1.78 LINK ND1 HIS B 363 CO CO B 401 1555 1555 1.85 LINK CO CO B 401 O HOH B 501 1555 1555 1.82 LINK CO CO B 401 O HOH B 502 1555 1555 2.16 LINK CO CO B 401 O HOH C 502 1555 9664 2.05 LINK OD1 ASP C 361 CO CO C 401 1555 1555 2.47 LINK OD2 ASP C 361 CO CO C 401 1555 1555 1.76 LINK ND1 HIS C 363 CO CO C 401 1555 1555 1.85 LINK CO CO C 401 O HOH C 501 1555 1555 1.78 LINK CO CO C 401 O HOH C 503 1555 1555 2.15 LINK OD1 ASP D 361 CO CO D 401 1555 1555 2.42 LINK OD2 ASP D 361 CO CO D 401 1555 1555 1.79 LINK ND1 HIS D 363 CO CO D 401 1555 1555 1.86 LINK CO CO D 401 O HOH D 501 1555 6675 1.92 LINK CO CO D 401 O HOH D 502 1555 1555 2.21 LINK CO CO D 401 O HOH D 503 1555 1555 2.11 SITE 1 AC1 5 ASP A 361 HIS A 363 HOH A 501 HOH A 503 SITE 2 AC1 5 HOH A 504 SITE 1 AC2 5 ASP B 361 HIS B 363 HOH B 501 HOH B 502 SITE 2 AC2 5 HOH C 502 SITE 1 AC3 5 HOH A 502 ASP C 361 HIS C 363 HOH C 501 SITE 2 AC3 5 HOH C 503 SITE 1 AC4 5 ASP D 361 HIS D 363 HOH D 501 HOH D 502 SITE 2 AC4 5 HOH D 503 CRYST1 140.551 140.551 85.140 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007115 0.004108 0.000000 0.00000 SCALE2 0.000000 0.008216 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011745 0.00000