HEADER TRANSLATION 14-OCT-15 5E8J TITLE CRYSTAL STRUCTURE OF MRNA CAP GUANINE-N7 METHYLTRANSFERASE IN COMPLEX TITLE 2 WITH RAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRNA CAP GUANINE-N7 METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 167-476; COMPND 5 SYNONYM: RG7MT1,MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE,MRNA CAP COMPND 6 METHYLTRANSFERASE,HCM1P; COMPND 7 EC: 2.1.1.56; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RNMT-ACTIVATING MINI PROTEIN; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: UNP RESIDUES 3-45; COMPND 13 SYNONYM: RAM,PROTEIN FAM103A1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNMT, KIAA0398; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: FAM103A1, C15ORF18; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS MRNA CAPPING, MRNA PROCESSING, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR P.PETIT,V.COWLING REVDAT 6 10-JAN-24 5E8J 1 REMARK REVDAT 5 10-JUL-19 5E8J 1 REMARK REVDAT 4 20-FEB-19 5E8J 1 REMARK LINK REVDAT 3 14-DEC-16 5E8J 1 JRNL REVDAT 2 03-AUG-16 5E8J 1 JRNL REVDAT 1 13-JUL-16 5E8J 0 JRNL AUTH D.VARSHNEY,A.P.PETIT,J.A.BUEREN-CALABUIG,C.JANSEN, JRNL AUTH 2 D.A.FLETCHER,M.PEGGIE,S.WEIDLICH,P.SCULLION,A.V.PISLIAKOV, JRNL AUTH 3 V.H.COWLING JRNL TITL MOLECULAR BASIS OF RNA GUANINE-7 METHYLTRANSFERASE (RNMT) JRNL TITL 2 ACTIVATION BY RAM. JRNL REF NUCLEIC ACIDS RES. V. 44 10423 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 27422871 JRNL DOI 10.1093/NAR/GKW637 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 28336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.250 REMARK 3 FREE R VALUE TEST SET COUNT : 1203 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.1637 - 4.8807 0.93 3000 135 0.2132 0.2542 REMARK 3 2 4.8807 - 3.8772 0.94 3020 166 0.1804 0.2297 REMARK 3 3 3.8772 - 3.3880 0.94 3061 127 0.1953 0.2714 REMARK 3 4 3.3880 - 3.0787 0.95 3111 115 0.2053 0.2574 REMARK 3 5 3.0787 - 2.8582 0.95 3124 118 0.2123 0.2547 REMARK 3 6 2.8582 - 2.6899 0.94 3091 104 0.2287 0.3145 REMARK 3 7 2.6899 - 2.5552 0.93 3034 112 0.2425 0.3334 REMARK 3 8 2.5552 - 2.4441 0.92 2986 143 0.2431 0.3119 REMARK 3 9 2.4441 - 2.3500 0.86 2706 183 0.2597 0.3264 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6002 REMARK 3 ANGLE : 0.790 8069 REMARK 3 CHIRALITY : 0.030 839 REMARK 3 PLANARITY : 0.003 1034 REMARK 3 DIHEDRAL : 15.025 2282 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -9.1914 13.3564 18.3482 REMARK 3 T TENSOR REMARK 3 T11: 0.0976 T22: 0.1242 REMARK 3 T33: 0.1307 T12: -0.0053 REMARK 3 T13: -0.0217 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 0.3249 L22: 0.4914 REMARK 3 L33: 0.7464 L12: -0.1682 REMARK 3 L13: -0.2865 L23: 0.3632 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: -0.0182 S13: 0.0125 REMARK 3 S21: 0.0064 S22: -0.0006 S23: -0.0053 REMARK 3 S31: 0.0227 S32: -0.0166 S33: 0.0047 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND SEGID REMARK 3 SELECTION : CHAIN B AND SEGID REMARK 3 ATOM PAIRS NUMBER : 2981 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C AND SEGID REMARK 3 SELECTION : CHAIN D AND SEGID REMARK 3 ATOM PAIRS NUMBER : 398 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E8J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214533. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28355 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 84.485 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 1.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.34900 REMARK 200 R SYM FOR SHELL (I) : 0.34900 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3BGV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.5, 30% PEG 4000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 165 REMARK 465 GLN A 166 REMARK 465 SER B 165 REMARK 465 GLN B 166 REMARK 465 THR C 2 REMARK 465 SER C 45 REMARK 465 THR D 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 LYS A 388 CG CD CE NZ REMARK 470 GLU A 425 CG CD OE1 OE2 REMARK 470 GLU A 432 CG CD OE1 OE2 REMARK 470 ASP B 248 CG OD1 OD2 REMARK 470 GLU D 6 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE B 340 OE1 GLU B 363 1.82 REMARK 500 NH2 ARG A 192 O ARG A 219 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 246 OD1 ASN A 446 1545 1.49 REMARK 500 NE2 GLN A 235 OE1 GLU B 432 1544 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 197 -158.45 -170.11 REMARK 500 ASP A 248 -155.35 -139.30 REMARK 500 ALA A 260 143.99 -171.72 REMARK 500 THR A 333 -158.19 -119.57 REMARK 500 ASN A 338 -153.96 -154.69 REMARK 500 GLU A 363 94.46 -37.23 REMARK 500 VAL A 365 -58.52 -128.30 REMARK 500 GLN A 448 123.43 -35.90 REMARK 500 LYS B 196 64.21 -100.72 REMARK 500 ARG B 197 -159.50 -164.34 REMARK 500 GLU B 250 150.96 -41.94 REMARK 500 ALA B 260 144.21 -171.98 REMARK 500 THR B 333 -159.11 -118.89 REMARK 500 ASN B 338 -155.19 -153.74 REMARK 500 GLU B 363 92.18 -44.50 REMARK 500 VAL B 365 -62.04 -125.92 REMARK 500 ALA B 423 60.93 -112.26 REMARK 500 GLU B 425 67.69 -102.09 REMARK 500 ARG C 18 113.24 -25.69 REMARK 500 ARG D 18 111.20 -24.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 446 SER A 447 -147.93 REMARK 500 SER A 447 GLN A 448 -129.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BGV RELATED DB: PDB REMARK 900 RELATED ID: 3EPP RELATED DB: PDB DBREF 5E8J A 165 476 UNP O43148 MCES_HUMAN 165 476 DBREF 5E8J B 165 476 UNP O43148 MCES_HUMAN 165 476 DBREF 5E8J C 2 45 UNP Q9BTL3 RAM_HUMAN 2 45 DBREF 5E8J D 2 45 UNP Q9BTL3 RAM_HUMAN 2 45 SEQRES 1 A 312 SER GLN SER ARG ILE PHE TYR LEU ARG ASN PHE ASN ASN SEQRES 2 A 312 TRP MET LYS SER VAL LEU ILE GLY GLU PHE LEU GLU LYS SEQRES 3 A 312 VAL ARG GLN LYS LYS LYS ARG ASP ILE THR VAL LEU ASP SEQRES 4 A 312 LEU GLY CYS GLY LYS GLY GLY ASP LEU LEU LYS TRP LYS SEQRES 5 A 312 LYS GLY ARG ILE ASN LYS LEU VAL CYS THR ASP ILE ALA SEQRES 6 A 312 ASP VAL SER VAL LYS GLN CYS GLN GLN ARG TYR GLU ASP SEQRES 7 A 312 MET LYS ASN ARG ARG ASP SER GLU TYR ILE PHE SER ALA SEQRES 8 A 312 GLU PHE ILE THR ALA ASP SER SER LYS GLU LEU LEU ILE SEQRES 9 A 312 ASP LYS PHE ARG ASP PRO GLN MET CYS PHE ASP ILE CYS SEQRES 10 A 312 SER CYS GLN PHE VAL CYS HIS TYR SER PHE GLU SER TYR SEQRES 11 A 312 GLU GLN ALA ASP MET MET LEU ARG ASN ALA CYS GLU ARG SEQRES 12 A 312 LEU SER PRO GLY GLY TYR PHE ILE GLY THR THR PRO ASN SEQRES 13 A 312 SER PHE GLU LEU ILE ARG ARG LEU GLU ALA SER GLU THR SEQRES 14 A 312 GLU SER PHE GLY ASN GLU ILE TYR THR VAL LYS PHE GLN SEQRES 15 A 312 LYS LYS GLY ASP TYR PRO LEU PHE GLY CYS LYS TYR ASP SEQRES 16 A 312 PHE ASN LEU GLU GLY VAL VAL ASP VAL PRO GLU PHE LEU SEQRES 17 A 312 VAL TYR PHE PRO LEU LEU ASN GLU MET ALA LYS LYS TYR SEQRES 18 A 312 ASN MET LYS LEU VAL TYR LYS LYS THR PHE LEU GLU PHE SEQRES 19 A 312 TYR GLU GLU LYS ILE LYS ASN ASN GLU ASN LYS MET LEU SEQRES 20 A 312 LEU LYS ARG MET GLN ALA LEU GLU PRO TYR PRO ALA ASN SEQRES 21 A 312 GLU SER SER LYS LEU VAL SER GLU LYS VAL ASP ASP TYR SEQRES 22 A 312 GLU HIS ALA ALA LYS TYR MET LYS ASN SER GLN VAL ARG SEQRES 23 A 312 LEU PRO LEU GLY THR LEU SER LYS SER GLU TRP GLU ALA SEQRES 24 A 312 THR SER ILE TYR LEU VAL PHE ALA PHE GLU LYS GLN GLN SEQRES 1 B 312 SER GLN SER ARG ILE PHE TYR LEU ARG ASN PHE ASN ASN SEQRES 2 B 312 TRP MET LYS SER VAL LEU ILE GLY GLU PHE LEU GLU LYS SEQRES 3 B 312 VAL ARG GLN LYS LYS LYS ARG ASP ILE THR VAL LEU ASP SEQRES 4 B 312 LEU GLY CYS GLY LYS GLY GLY ASP LEU LEU LYS TRP LYS SEQRES 5 B 312 LYS GLY ARG ILE ASN LYS LEU VAL CYS THR ASP ILE ALA SEQRES 6 B 312 ASP VAL SER VAL LYS GLN CYS GLN GLN ARG TYR GLU ASP SEQRES 7 B 312 MET LYS ASN ARG ARG ASP SER GLU TYR ILE PHE SER ALA SEQRES 8 B 312 GLU PHE ILE THR ALA ASP SER SER LYS GLU LEU LEU ILE SEQRES 9 B 312 ASP LYS PHE ARG ASP PRO GLN MET CYS PHE ASP ILE CYS SEQRES 10 B 312 SER CYS GLN PHE VAL CYS HIS TYR SER PHE GLU SER TYR SEQRES 11 B 312 GLU GLN ALA ASP MET MET LEU ARG ASN ALA CYS GLU ARG SEQRES 12 B 312 LEU SER PRO GLY GLY TYR PHE ILE GLY THR THR PRO ASN SEQRES 13 B 312 SER PHE GLU LEU ILE ARG ARG LEU GLU ALA SER GLU THR SEQRES 14 B 312 GLU SER PHE GLY ASN GLU ILE TYR THR VAL LYS PHE GLN SEQRES 15 B 312 LYS LYS GLY ASP TYR PRO LEU PHE GLY CYS LYS TYR ASP SEQRES 16 B 312 PHE ASN LEU GLU GLY VAL VAL ASP VAL PRO GLU PHE LEU SEQRES 17 B 312 VAL TYR PHE PRO LEU LEU ASN GLU MET ALA LYS LYS TYR SEQRES 18 B 312 ASN MET LYS LEU VAL TYR LYS LYS THR PHE LEU GLU PHE SEQRES 19 B 312 TYR GLU GLU LYS ILE LYS ASN ASN GLU ASN LYS MET LEU SEQRES 20 B 312 LEU LYS ARG MET GLN ALA LEU GLU PRO TYR PRO ALA ASN SEQRES 21 B 312 GLU SER SER LYS LEU VAL SER GLU LYS VAL ASP ASP TYR SEQRES 22 B 312 GLU HIS ALA ALA LYS TYR MET LYS ASN SER GLN VAL ARG SEQRES 23 B 312 LEU PRO LEU GLY THR LEU SER LYS SER GLU TRP GLU ALA SEQRES 24 B 312 THR SER ILE TYR LEU VAL PHE ALA PHE GLU LYS GLN GLN SEQRES 1 C 44 THR ASP THR ALA GLU ALA VAL PRO LYS PHE GLU GLU MET SEQRES 2 C 44 PHE ALA SER ARG PHE THR GLU ASN ASP LYS GLU TYR GLN SEQRES 3 C 44 GLU TYR LEU LYS ARG PRO PRO GLU SER PRO PRO ILE VAL SEQRES 4 C 44 GLU GLU TRP ASN SER SEQRES 1 D 44 THR ASP THR ALA GLU ALA VAL PRO LYS PHE GLU GLU MET SEQRES 2 D 44 PHE ALA SER ARG PHE THR GLU ASN ASP LYS GLU TYR GLN SEQRES 3 D 44 GLU TYR LEU LYS ARG PRO PRO GLU SER PRO PRO ILE VAL SEQRES 4 D 44 GLU GLU TRP ASN SER HET GOL A 501 6 HET SAH A 502 26 HET SAH B 501 26 HETNAM GOL GLYCEROL HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL C3 H8 O3 FORMUL 6 SAH 2(C14 H20 N6 O5 S) FORMUL 8 HOH *219(H2 O) HELIX 1 AA1 ILE A 169 LYS A 195 1 27 HELIX 2 AA2 ASP A 211 GLY A 218 1 8 HELIX 3 AA3 ALA A 229 ASN A 245 1 17 HELIX 4 AA4 LEU A 266 LYS A 270 5 5 HELIX 5 AA5 VAL A 286 GLU A 292 5 7 HELIX 6 AA6 SER A 293 GLU A 306 1 14 HELIX 7 AA7 ASN A 320 SER A 331 1 12 HELIX 8 AA8 TYR A 374 LYS A 383 1 10 HELIX 9 AA9 PHE A 395 ILE A 403 1 9 HELIX 10 AB1 ASN A 405 MET A 415 1 11 HELIX 11 AB2 TYR A 437 MET A 444 1 8 HELIX 12 AB3 SER A 457 SER A 465 1 9 HELIX 13 AB4 ILE B 169 LYS B 195 1 27 HELIX 14 AB5 ASP B 211 GLY B 218 1 8 HELIX 15 AB6 ALA B 229 ASN B 245 1 17 HELIX 16 AB7 LEU B 266 LYS B 270 5 5 HELIX 17 AB8 VAL B 286 GLU B 292 5 7 HELIX 18 AB9 SER B 293 GLU B 306 1 14 HELIX 19 AC1 ASN B 320 SER B 331 1 12 HELIX 20 AC2 TYR B 374 LYS B 383 1 10 HELIX 21 AC3 PHE B 395 ILE B 403 1 9 HELIX 22 AC4 ASN B 405 MET B 415 1 11 HELIX 23 AC5 TYR B 437 MET B 444 1 8 HELIX 24 AC6 SER B 457 SER B 465 1 9 HELIX 25 AC7 THR C 4 PHE C 15 1 12 HELIX 26 AC8 ASP C 23 LYS C 31 1 9 HELIX 27 AC9 THR D 4 PHE D 15 1 12 HELIX 28 AD1 ASP D 23 LYS D 31 1 9 SHEET 1 AA1 7 SER A 254 THR A 259 0 SHEET 2 AA1 7 LYS A 222 ASP A 227 1 N CYS A 225 O GLU A 256 SHEET 3 AA1 7 THR A 200 LEU A 204 1 N ASP A 203 O VAL A 224 SHEET 4 AA1 7 PHE A 278 GLN A 284 1 O SER A 282 N LEU A 202 SHEET 5 AA1 7 LEU A 308 PRO A 319 1 O SER A 309 N PHE A 278 SHEET 6 AA1 7 TYR A 467 LYS A 474 -1 O LYS A 474 N GLY A 312 SHEET 7 AA1 7 MET A 387 THR A 394 -1 N LYS A 393 O VAL A 469 SHEET 1 AA2 4 SER A 335 GLY A 337 0 SHEET 2 AA2 4 TYR A 341 PHE A 345 -1 O VAL A 343 N PHE A 336 SHEET 3 AA2 4 LYS A 357 LEU A 362 -1 O ASN A 361 N THR A 342 SHEET 4 AA2 4 VAL A 366 ASP A 367 -1 O VAL A 366 N LEU A 362 SHEET 1 AA3 4 SER A 335 GLY A 337 0 SHEET 2 AA3 4 TYR A 341 PHE A 345 -1 O VAL A 343 N PHE A 336 SHEET 3 AA3 4 LYS A 357 LEU A 362 -1 O ASN A 361 N THR A 342 SHEET 4 AA3 4 GLU A 370 PHE A 371 -1 O GLU A 370 N TYR A 358 SHEET 1 AA4 3 GLU A 419 TYR A 421 0 SHEET 2 AA4 3 LEU A 453 THR A 455 -1 O LEU A 453 N TYR A 421 SHEET 3 AA4 3 ILE C 39 VAL C 40 -1 O VAL C 40 N GLY A 454 SHEET 1 AA5 7 SER B 254 THR B 259 0 SHEET 2 AA5 7 LYS B 222 ASP B 227 1 N CYS B 225 O GLU B 256 SHEET 3 AA5 7 THR B 200 LEU B 204 1 N ASP B 203 O VAL B 224 SHEET 4 AA5 7 PHE B 278 GLN B 284 1 O SER B 282 N LEU B 202 SHEET 5 AA5 7 LEU B 308 PRO B 319 1 O SER B 309 N PHE B 278 SHEET 6 AA5 7 TYR B 467 LYS B 474 -1 O LYS B 474 N GLY B 312 SHEET 7 AA5 7 MET B 387 THR B 394 -1 N LYS B 393 O VAL B 469 SHEET 1 AA6 4 SER B 335 GLY B 337 0 SHEET 2 AA6 4 TYR B 341 PHE B 345 -1 O VAL B 343 N PHE B 336 SHEET 3 AA6 4 LYS B 357 LEU B 362 -1 O ASP B 359 N LYS B 344 SHEET 4 AA6 4 VAL B 366 ASP B 367 -1 O VAL B 366 N LEU B 362 SHEET 1 AA7 4 SER B 335 GLY B 337 0 SHEET 2 AA7 4 TYR B 341 PHE B 345 -1 O VAL B 343 N PHE B 336 SHEET 3 AA7 4 LYS B 357 LEU B 362 -1 O ASP B 359 N LYS B 344 SHEET 4 AA7 4 GLU B 370 PHE B 371 -1 O GLU B 370 N TYR B 358 SHEET 1 AA8 2 GLU B 419 TYR B 421 0 SHEET 2 AA8 2 LEU B 453 THR B 455 -1 O LEU B 453 N TYR B 421 CISPEP 1 TYR A 421 PRO A 422 0 -1.75 CISPEP 2 LEU A 451 PRO A 452 0 -3.48 CISPEP 3 TYR B 421 PRO B 422 0 -6.88 CISPEP 4 LEU B 451 PRO B 452 0 -3.08 SITE 1 AC1 6 GLY A 207 LYS A 208 GLY A 209 GLY A 210 SITE 2 AC1 6 SAH A 502 HOH A 633 SITE 1 AC2 18 LYS A 180 GLY A 205 CYS A 206 GLY A 207 SITE 2 AC2 18 ASP A 227 ILE A 228 ALA A 260 ASP A 261 SITE 3 AC2 18 SER A 262 GLN A 284 PHE A 285 VAL A 286 SITE 4 AC2 18 TYR A 289 MET A 300 GOL A 501 HOH A 633 SITE 5 AC2 18 HOH A 654 HOH A 663 SITE 1 AC3 14 LYS B 180 GLY B 205 CYS B 206 GLY B 207 SITE 2 AC3 14 ASP B 227 ILE B 228 ALA B 260 ASP B 261 SITE 3 AC3 14 SER B 262 GLN B 284 PHE B 285 VAL B 286 SITE 4 AC3 14 TYR B 289 HOH B 650 CRYST1 49.147 50.487 84.579 90.06 92.41 115.41 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020347 0.009668 0.001062 0.00000 SCALE2 0.000000 0.021929 0.000466 0.00000 SCALE3 0.000000 0.000000 0.011836 0.00000