HEADER IMMUNE SYSTEM 14-OCT-15 5E8P TITLE THE STRUCTURE OF THE TEIPP ASSOCIATED ALTERED PEPTIDE LIGAND TRH4- TITLE 2 P5NLE IN COMPLEX WITH H-2D(B) COMPND MOL_ID: 1; COMPND 2 MOLECULE: H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: H-2D(B); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B, E; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: CERAMIDE SYNTHASE 5; COMPND 12 CHAIN: C, F; COMPND 13 FRAGMENT: UNP RESIDUES 379-387; COMPND 14 SYNONYM: CERS5,LAG1 LONGEVITY ASSURANCE HOMOLOG 5,TRANSLOCATING COMPND 15 CHAIN-ASSOCIATING MEMBRANE PROTEIN HOMOLOG 4,TRAM HOMOLOG 4; COMPND 16 EC: 2.3.1.24; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: H2-D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: B2M; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 18 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 19 ORGANISM_TAXID: 10090 KEYWDS CANCER, NEO-EPITOPE, TAP-DEFICIENCY, TEIPP, MHC-I, SULFUR-PI KEYWDS 2 INTERACTIONS, NON-CLASSICAL PEPTIDE BINDING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR I.HAFSTRAND,E.DOORDUIJN,A.D.DURU,J.BURATTO,C.C.OLIVEIRA,T.SANDALOVA, AUTHOR 2 T.VAN HALL,A.ACHOUR REVDAT 4 10-JAN-24 5E8P 1 REMARK REVDAT 3 02-MAR-16 5E8P 1 JRNL REVDAT 2 10-FEB-16 5E8P 1 JRNL REVDAT 1 03-FEB-16 5E8P 0 JRNL AUTH I.HAFSTRAND,E.M.DOORDUIJN,A.D.DURU,J.BURATTO,C.C.OLIVEIRA, JRNL AUTH 2 T.SANDALOVA,T.VAN HALL,A.ACHOUR JRNL TITL THE MHC CLASS I CANCER-ASSOCIATED NEOEPITOPE TRH4 LINKED JRNL TITL 2 WITH IMPAIRED PEPTIDE PROCESSING INDUCES A UNIQUE JRNL TITL 3 NONCANONICAL TCR CONFORMER. JRNL REF J IMMUNOL. V. 196 2327 2016 JRNL REFN ESSN 1550-6606 JRNL PMID 26800871 JRNL DOI 10.4049/JIMMUNOL.1502249 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 68358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 3382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.8062 - 5.7582 0.98 2778 146 0.1832 0.2143 REMARK 3 2 5.7582 - 4.5748 0.97 2754 126 0.1600 0.1671 REMARK 3 3 4.5748 - 3.9978 0.97 2710 134 0.1499 0.1819 REMARK 3 4 3.9978 - 3.6328 0.97 2725 137 0.1738 0.1955 REMARK 3 5 3.6328 - 3.3728 0.98 2746 142 0.1934 0.2295 REMARK 3 6 3.3728 - 3.1741 0.97 2683 154 0.2171 0.2589 REMARK 3 7 3.1741 - 3.0153 0.97 2661 166 0.2330 0.2983 REMARK 3 8 3.0153 - 2.8841 0.97 2702 154 0.2321 0.2950 REMARK 3 9 2.8841 - 2.7731 0.97 2703 140 0.2315 0.2795 REMARK 3 10 2.7731 - 2.6775 0.98 2732 141 0.2390 0.3465 REMARK 3 11 2.6775 - 2.5938 0.98 2724 149 0.2370 0.3020 REMARK 3 12 2.5938 - 2.5197 0.99 2732 148 0.2347 0.2624 REMARK 3 13 2.5197 - 2.4534 0.99 2738 155 0.2165 0.2508 REMARK 3 14 2.4534 - 2.3936 0.99 2756 139 0.2268 0.2672 REMARK 3 15 2.3936 - 2.3392 0.98 2745 130 0.2213 0.2798 REMARK 3 16 2.3392 - 2.2894 0.99 2715 132 0.2276 0.2676 REMARK 3 17 2.2894 - 2.2436 0.96 2667 151 0.2925 0.3102 REMARK 3 18 2.2436 - 2.2013 0.94 2594 132 0.3100 0.3638 REMARK 3 19 2.2013 - 2.1620 0.96 2685 111 0.2432 0.3094 REMARK 3 20 2.1620 - 2.1253 0.96 2679 136 0.2463 0.3131 REMARK 3 21 2.1253 - 2.0911 0.97 2682 141 0.2609 0.3116 REMARK 3 22 2.0911 - 2.0589 0.95 2625 130 0.3466 0.3906 REMARK 3 23 2.0589 - 2.0286 0.97 2700 151 0.3043 0.3757 REMARK 3 24 2.0286 - 2.0001 0.98 2740 137 0.2804 0.3100 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6455 REMARK 3 ANGLE : 1.190 8767 REMARK 3 CHIRALITY : 0.056 883 REMARK 3 PLANARITY : 0.007 1143 REMARK 3 DIHEDRAL : 17.412 3849 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E8P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214532. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96500 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : ID30A-1/MASSIF-1, PILATUS3 2M REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68583 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 32.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1S7U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULPHATE, 0.1 M TRIS REMARK 280 -HCL, 0.5 M NACL, PH 8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 33.22294 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.88600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.32608 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 33.22294 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 61.88600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 47.32608 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 177 REMARK 465 THR A 178 REMARK 465 LEU A 179 REMARK 465 LEU A 180 REMARK 465 ASN D 176 REMARK 465 ALA D 177 REMARK 465 THR D 178 REMARK 465 LEU D 179 REMARK 465 LEU D 180 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 194 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 ARG D 181 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 273 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 83 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH E 110 O HOH E 142 2.14 REMARK 500 O HOH B 232 O HOH B 242 2.15 REMARK 500 O HOH B 216 O HOH B 238 2.18 REMARK 500 O HOH E 101 O HOH E 102 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 227 CB - CG - OD1 ANGL. DEV. = 8.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 114 106.20 -162.07 REMARK 500 LEU A 219 -89.39 -77.80 REMARK 500 THR A 225 -73.66 -71.27 REMARK 500 ASP A 227 -27.33 85.86 REMARK 500 TRP B 60 -9.03 83.86 REMARK 500 THR C 6 -94.28 -99.49 REMARK 500 ASN D 30 19.37 58.66 REMARK 500 ARG D 111 144.58 -173.42 REMARK 500 LEU D 114 106.09 -161.76 REMARK 500 LYS D 131 -35.83 -132.39 REMARK 500 SER D 195 85.43 -58.91 REMARK 500 LYS D 196 17.52 2.20 REMARK 500 ASN D 220 -76.93 -117.77 REMARK 500 ASP D 227 18.77 54.47 REMARK 500 TRP E 60 -0.55 71.91 REMARK 500 THR F 6 -93.62 -101.98 REMARK 500 REMARK 500 REMARK: NULL DBREF 5E8P A 1 276 UNP P01899 HA11_MOUSE 25 300 DBREF 5E8P B 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 5E8P C 1 9 UNP Q9D6K9 CERS5_MOUSE 379 387 DBREF 5E8P D 1 276 UNP P01899 HA11_MOUSE 25 300 DBREF 5E8P E 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 5E8P F 1 9 UNP Q9D6K9 CERS5_MOUSE 379 387 SEQADV 5E8P NLE C 5 UNP Q9D6K9 MET 384 ENGINEERED MUTATION SEQADV 5E8P NLE F 5 UNP Q9D6K9 MET 384 ENGINEERED MUTATION SEQRES 1 A 276 GLY PRO HIS SER MET ARG TYR PHE GLU THR ALA VAL SER SEQRES 2 A 276 ARG PRO GLY LEU GLU GLU PRO ARG TYR ILE SER VAL GLY SEQRES 3 A 276 TYR VAL ASP ASN LYS GLU PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 276 ALA GLU ASN PRO ARG TYR GLU PRO ARG ALA PRO TRP MET SEQRES 5 A 276 GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR GLN SEQRES 6 A 276 LYS ALA LYS GLY GLN GLU GLN TRP PHE ARG VAL SER LEU SEQRES 7 A 276 ARG ASN LEU LEU GLY TYR TYR ASN GLN SER ALA GLY GLY SEQRES 8 A 276 SER HIS THR LEU GLN GLN MET SER GLY CYS ASP LEU GLY SEQRES 9 A 276 SER ASP TRP ARG LEU LEU ARG GLY TYR LEU GLN PHE ALA SEQRES 10 A 276 TYR GLU GLY ARG ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 276 LYS THR TRP THR ALA ALA ASP MET ALA ALA GLN ILE THR SEQRES 12 A 276 ARG ARG LYS TRP GLU GLN SER GLY ALA ALA GLU HIS TYR SEQRES 13 A 276 LYS ALA TYR LEU GLU GLY GLU CYS VAL GLU TRP LEU HIS SEQRES 14 A 276 ARG TYR LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR SEQRES 15 A 276 ASP SER PRO LYS ALA HIS VAL THR HIS HIS PRO ARG SER SEQRES 16 A 276 LYS GLY GLU VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 276 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 18 A 276 GLU GLU LEU THR GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 A 276 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 20 A 276 VAL VAL PRO LEU GLY LYS GLU GLN ASN TYR THR CYS ARG SEQRES 21 A 276 VAL TYR HIS GLU GLY LEU PRO GLU PRO LEU THR LEU ARG SEQRES 22 A 276 TRP GLU PRO SEQRES 1 B 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 B 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 B 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 B 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 B 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 B 99 ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO LYS SEQRES 8 B 99 THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 C 9 MET CYS LEU ARG NLE THR ALA VAL MET SEQRES 1 D 276 GLY PRO HIS SER MET ARG TYR PHE GLU THR ALA VAL SER SEQRES 2 D 276 ARG PRO GLY LEU GLU GLU PRO ARG TYR ILE SER VAL GLY SEQRES 3 D 276 TYR VAL ASP ASN LYS GLU PHE VAL ARG PHE ASP SER ASP SEQRES 4 D 276 ALA GLU ASN PRO ARG TYR GLU PRO ARG ALA PRO TRP MET SEQRES 5 D 276 GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR GLN SEQRES 6 D 276 LYS ALA LYS GLY GLN GLU GLN TRP PHE ARG VAL SER LEU SEQRES 7 D 276 ARG ASN LEU LEU GLY TYR TYR ASN GLN SER ALA GLY GLY SEQRES 8 D 276 SER HIS THR LEU GLN GLN MET SER GLY CYS ASP LEU GLY SEQRES 9 D 276 SER ASP TRP ARG LEU LEU ARG GLY TYR LEU GLN PHE ALA SEQRES 10 D 276 TYR GLU GLY ARG ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 D 276 LYS THR TRP THR ALA ALA ASP MET ALA ALA GLN ILE THR SEQRES 12 D 276 ARG ARG LYS TRP GLU GLN SER GLY ALA ALA GLU HIS TYR SEQRES 13 D 276 LYS ALA TYR LEU GLU GLY GLU CYS VAL GLU TRP LEU HIS SEQRES 14 D 276 ARG TYR LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR SEQRES 15 D 276 ASP SER PRO LYS ALA HIS VAL THR HIS HIS PRO ARG SER SEQRES 16 D 276 LYS GLY GLU VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 D 276 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 18 D 276 GLU GLU LEU THR GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 D 276 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 20 D 276 VAL VAL PRO LEU GLY LYS GLU GLN ASN TYR THR CYS ARG SEQRES 21 D 276 VAL TYR HIS GLU GLY LEU PRO GLU PRO LEU THR LEU ARG SEQRES 22 D 276 TRP GLU PRO SEQRES 1 E 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 E 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 E 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 E 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 E 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 E 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 E 99 ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO LYS SEQRES 8 E 99 THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 F 9 MET CYS LEU ARG NLE THR ALA VAL MET HET NLE C 5 8 HET NLE F 5 8 HET SO4 B 101 5 HETNAM NLE NORLEUCINE HETNAM SO4 SULFATE ION FORMUL 3 NLE 2(C6 H13 N O2) FORMUL 7 SO4 O4 S 2- FORMUL 8 HOH *245(H2 O) HELIX 1 AA1 ALA A 49 GLU A 55 5 7 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 ALA A 140 GLY A 151 1 12 HELIX 4 AA4 GLY A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 LYS A 253 TYR A 257 5 5 HELIX 7 AA7 ALA D 49 GLU D 55 5 7 HELIX 8 AA8 GLY D 56 TYR D 85 1 30 HELIX 9 AA9 ASP D 137 GLY D 151 1 15 HELIX 10 AB1 GLY D 151 GLY D 162 1 12 HELIX 11 AB2 GLY D 162 ASN D 174 1 13 HELIX 12 AB3 LYS D 253 TYR D 257 5 5 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 LYS A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N SER A 24 O PHE A 36 SHEET 4 AA1 8 HIS A 3 SER A 13 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 HIS A 93 LEU A 103 -1 O LEU A 103 N HIS A 3 SHEET 6 AA1 8 LEU A 109 TYR A 118 -1 O TYR A 113 N GLY A 100 SHEET 7 AA1 8 ARG A 121 LEU A 126 -1 O LEU A 126 N LEU A 114 SHEET 8 AA1 8 TRP A 133 THR A 134 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 SER A 195 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA2 4 PHE A 241 VAL A 249 -1 O VAL A 249 N VAL A 199 SHEET 4 AA2 4 GLU A 229 LEU A 230 -1 N GLU A 229 O SER A 246 SHEET 1 AA3 4 LYS A 186 SER A 195 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA3 4 PHE A 241 VAL A 249 -1 O VAL A 249 N VAL A 199 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 3 THR A 214 GLN A 218 0 SHEET 2 AA4 3 THR A 258 TYR A 262 -1 O TYR A 262 N THR A 214 SHEET 3 AA4 3 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 GLN B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O ALA B 66 N CYS B 25 SHEET 4 AA5 4 GLU B 50 MET B 51 -1 N GLU B 50 O HIS B 67 SHEET 1 AA6 4 GLN B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O ALA B 66 N CYS B 25 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 LYS B 44 LYS B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O LYS B 44 SHEET 3 AA7 4 TYR B 78 LYS B 83 -1 O ARG B 81 N GLN B 38 SHEET 4 AA7 4 LYS B 91 TYR B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 AA8 8 GLU D 46 PRO D 47 0 SHEET 2 AA8 8 LYS D 31 ASP D 37 -1 N ARG D 35 O GLU D 46 SHEET 3 AA8 8 ARG D 21 VAL D 28 -1 N SER D 24 O PHE D 36 SHEET 4 AA8 8 HIS D 3 SER D 13 -1 N ARG D 6 O TYR D 27 SHEET 5 AA8 8 HIS D 93 LEU D 103 -1 O LEU D 103 N HIS D 3 SHEET 6 AA8 8 LEU D 109 TYR D 118 -1 O LEU D 110 N ASP D 102 SHEET 7 AA8 8 ARG D 121 LEU D 126 -1 O LEU D 126 N LEU D 114 SHEET 8 AA8 8 TRP D 133 THR D 134 -1 O THR D 134 N ALA D 125 SHEET 1 AA9 4 LYS D 186 PRO D 193 0 SHEET 2 AA9 4 VAL D 199 PHE D 208 -1 O TRP D 204 N HIS D 188 SHEET 3 AA9 4 PHE D 241 VAL D 249 -1 O VAL D 247 N LEU D 201 SHEET 4 AA9 4 MET D 228 LEU D 230 -1 N GLU D 229 O SER D 246 SHEET 1 AB1 4 LYS D 186 PRO D 193 0 SHEET 2 AB1 4 VAL D 199 PHE D 208 -1 O TRP D 204 N HIS D 188 SHEET 3 AB1 4 PHE D 241 VAL D 249 -1 O VAL D 247 N LEU D 201 SHEET 4 AB1 4 ARG D 234 PRO D 235 -1 N ARG D 234 O GLN D 242 SHEET 1 AB2 3 THR D 214 GLN D 218 0 SHEET 2 AB2 3 THR D 258 TYR D 262 -1 O THR D 258 N GLN D 218 SHEET 3 AB2 3 LEU D 270 LEU D 272 -1 O LEU D 272 N CYS D 259 SHEET 1 AB3 4 GLN E 6 SER E 11 0 SHEET 2 AB3 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 AB3 4 PHE E 62 PHE E 70 -1 O THR E 68 N LEU E 23 SHEET 4 AB3 4 GLU E 50 MET E 51 -1 N GLU E 50 O HIS E 67 SHEET 1 AB4 4 GLN E 6 SER E 11 0 SHEET 2 AB4 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 AB4 4 PHE E 62 PHE E 70 -1 O THR E 68 N LEU E 23 SHEET 4 AB4 4 SER E 55 PHE E 56 -1 N SER E 55 O TYR E 63 SHEET 1 AB5 4 LYS E 44 LYS E 45 0 SHEET 2 AB5 4 GLU E 36 LYS E 41 -1 N LYS E 41 O LYS E 44 SHEET 3 AB5 4 TYR E 78 LYS E 83 -1 O ARG E 81 N GLN E 38 SHEET 4 AB5 4 LYS E 91 TYR E 94 -1 O LYS E 91 N VAL E 82 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.08 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.01 SSBOND 4 CYS D 101 CYS D 164 1555 1555 2.06 SSBOND 5 CYS D 203 CYS D 259 1555 1555 2.04 SSBOND 6 CYS E 25 CYS E 80 1555 1555 2.00 LINK C ARG C 4 N NLE C 5 1555 1555 1.31 LINK C NLE C 5 N THR C 6 1555 1555 1.30 LINK C ARG F 4 N NLE F 5 1555 1555 1.33 LINK C NLE F 5 N THR F 6 1555 1555 1.33 CISPEP 1 TYR A 209 PRO A 210 0 -1.89 CISPEP 2 HIS B 31 PRO B 32 0 0.38 CISPEP 3 TYR D 209 PRO D 210 0 -2.80 CISPEP 4 HIS E 31 PRO E 32 0 2.72 CRYST1 90.590 123.772 97.683 90.00 104.31 90.00 I 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011039 0.000000 0.002816 0.00000 SCALE2 0.000000 0.008079 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010565 0.00000