HEADER TRANSFERASE 15-OCT-15 5E9E TITLE CRYSTAL STRUCTURE OF THE ALPHA-KINASE DOMAIN OF MYOSIN-II HEAVY CHAIN TITLE 2 KINASE A IN COMPLEX WITH AMP-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN-II HEAVY CHAIN KINASE A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ALPHA KINASE DOMAIN (UNP RESIDUES 552-841); COMPND 5 SYNONYM: MHCK-A; COMPND 6 EC: 2.7.11.7; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_COMMON: SLIME MOLD; SOURCE 4 ORGANISM_TAXID: 44689; SOURCE 5 GENE: MHKA, MHCKA, DDB_G0291231; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ATYPICAL SER/THR PROTEIN KINASE, ALPHA KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.YE,Z.JIA REVDAT 3 27-SEP-23 5E9E 1 REMARK REVDAT 2 08-JAN-20 5E9E 1 REMARK REVDAT 1 08-JUN-16 5E9E 0 JRNL AUTH Q.YE,Y.YANG,L.VAN STAALDUINEN,S.W.CRAWLEY,L.LIU,S.BRENNAN, JRNL AUTH 2 G.P.COTE,Z.JIA JRNL TITL STRUCTURE OF THE DICTYOSTELIUM MYOSIN-II HEAVY CHAIN KINASE JRNL TITL 2 A (MHCK-A) ALPHA-KINASE DOMAIN APOENZYME REVEALS A NOVEL JRNL TITL 3 AUTOINHIBITED CONFORMATION. JRNL REF SCI REP V. 6 26634 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27211275 JRNL DOI 10.1038/SREP26634 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 26910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1434 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1942 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4078 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.82000 REMARK 3 B22 (A**2) : 0.96000 REMARK 3 B33 (A**2) : 1.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.318 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.233 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.168 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.311 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4237 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4086 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5726 ; 1.491 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9459 ; 0.947 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 511 ; 6.419 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;36.285 ;25.419 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 778 ;13.315 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;21.921 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 628 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4639 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 913 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2055 ; 2.753 ; 4.093 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2054 ; 2.753 ; 4.092 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2557 ; 4.499 ; 6.113 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 552 810 B 552 810 15167 0.120 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5E9E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 1.98.7 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 1.98.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28345 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.34900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3LMH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG8000, 0.1 M MOPS, 0.2 M REMARK 280 MAGNESIUM SULFATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.30050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.05600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.30050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.05600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 535 REMARK 465 GLY A 536 REMARK 465 GLY A 537 REMARK 465 HIS A 538 REMARK 465 HIS A 539 REMARK 465 HIS A 540 REMARK 465 HIS A 541 REMARK 465 HIS A 542 REMARK 465 HIS A 543 REMARK 465 GLY A 544 REMARK 465 GLU A 545 REMARK 465 ASN A 546 REMARK 465 LEU A 547 REMARK 465 TYR A 548 REMARK 465 PHE A 549 REMARK 465 GLN A 550 REMARK 465 GLY A 551 REMARK 465 THR A 613 REMARK 465 THR A 614 REMARK 465 ALA A 651 REMARK 465 GLU A 652 REMARK 465 GLY A 811 REMARK 465 VAL A 812 REMARK 465 LEU A 813 REMARK 465 SER A 814 REMARK 465 GLY A 815 REMARK 465 ASN A 816 REMARK 465 ASN A 817 REMARK 465 LYS A 818 REMARK 465 LYS A 819 REMARK 465 GLN A 820 REMARK 465 LEU A 821 REMARK 465 GLN A 822 REMARK 465 GLN A 823 REMARK 465 GLY A 824 REMARK 465 THR A 825 REMARK 465 MET A 826 REMARK 465 VAL A 827 REMARK 465 MET A 828 REMARK 465 PRO A 829 REMARK 465 ASP A 830 REMARK 465 ILE A 831 REMARK 465 LEU A 832 REMARK 465 PRO A 833 REMARK 465 GLU A 834 REMARK 465 LEU A 835 REMARK 465 MET A 836 REMARK 465 PRO A 837 REMARK 465 SER A 838 REMARK 465 ASP A 839 REMARK 465 ASN A 840 REMARK 465 THR A 841 REMARK 465 MET B 535 REMARK 465 GLY B 536 REMARK 465 GLY B 537 REMARK 465 HIS B 538 REMARK 465 HIS B 539 REMARK 465 HIS B 540 REMARK 465 HIS B 541 REMARK 465 HIS B 542 REMARK 465 HIS B 543 REMARK 465 GLY B 544 REMARK 465 GLU B 545 REMARK 465 ASN B 546 REMARK 465 LEU B 547 REMARK 465 TYR B 548 REMARK 465 PHE B 549 REMARK 465 GLN B 550 REMARK 465 GLY B 551 REMARK 465 THR B 613 REMARK 465 SER B 814 REMARK 465 GLY B 815 REMARK 465 ASN B 816 REMARK 465 ASN B 817 REMARK 465 LYS B 818 REMARK 465 LYS B 819 REMARK 465 GLN B 820 REMARK 465 LEU B 821 REMARK 465 GLN B 822 REMARK 465 GLN B 823 REMARK 465 GLY B 824 REMARK 465 THR B 825 REMARK 465 MET B 826 REMARK 465 VAL B 827 REMARK 465 MET B 828 REMARK 465 PRO B 829 REMARK 465 ASP B 830 REMARK 465 ILE B 831 REMARK 465 LEU B 832 REMARK 465 PRO B 833 REMARK 465 GLU B 834 REMARK 465 LEU B 835 REMARK 465 MET B 836 REMARK 465 PRO B 837 REMARK 465 SER B 838 REMARK 465 ASP B 839 REMARK 465 ASN B 840 REMARK 465 THR B 841 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 610 O REMARK 470 SER A 700 O REMARK 470 PRO B 701 O REMARK 470 VAL B 807 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 701 157.07 -46.20 REMARK 500 TYR A 727 40.90 -148.10 REMARK 500 MET A 752 101.72 -161.52 REMARK 500 VAL A 755 -157.76 -130.57 REMARK 500 ASP A 761 -121.85 55.40 REMARK 500 LYS B 615 32.46 -97.00 REMARK 500 TYR B 727 40.02 -148.67 REMARK 500 VAL B 755 -158.58 -130.06 REMARK 500 ASP B 761 -122.30 55.92 REMARK 500 VAL B 812 171.27 -58.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 742 ND1 REMARK 620 2 HIS A 794 NE2 96.0 REMARK 620 3 CYS A 796 SG 99.4 101.5 REMARK 620 4 CYS A 800 SG 122.3 116.7 116.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 742 ND1 REMARK 620 2 HIS B 794 NE2 104.2 REMARK 620 3 CYS B 796 SG 101.0 106.4 REMARK 620 4 CYS B 800 SG 113.2 115.4 115.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 903 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LKM RELATED DB: PDB REMARK 900 MYOSIN-II HEAVY CHAIN KINASE A COMPLEXED WITH AMP REMARK 900 RELATED ID: 3LLA RELATED DB: PDB REMARK 900 MYOSIN-II HEAVY CHAIN KINASE A COMPLEXED WITH AMP-PCP REMARK 900 RELATED ID: 3LMH RELATED DB: PDB REMARK 900 MYOSIN-II HEAVY CHAIN KINASE A COMPLEXED WITH ADP REMARK 900 RELATED ID: 3LMI RELATED DB: PDB REMARK 900 MYOSIN-II HEAVY CHAIN KINASE A D766A MUTANT COMPLEXED WITH ATP REMARK 900 RELATED ID: 3PDT RELATED DB: PDB REMARK 900 MYOSIN-II HEAVY CHAIN KINASE A WITH 32 AMINO ACID C-TERMINAL REMARK 900 TRUNCATION REMARK 900 RELATED ID: 4ZME RELATED DB: PDB REMARK 900 MYOSIN-II HEAVY CHAIN KINASE A COMPLEXED WITH ADENOSINE REMARK 900 RELATED ID: 4ZMF RELATED DB: PDB REMARK 900 MYOSIN-II HEAVY CHAIN KINASE A WITH PHOSPHORYLATED ASPARTATE REMARK 900 RELATED ID: 4ZS4 RELATED DB: PDB REMARK 900 MYOSIN-II HEAVY CHAIN KINASE A D756A MUTANT COMPLEXED WITH ATP REMARK 900 RELATED ID: 5E4H RELATED DB: PDB DBREF 5E9E A 552 841 UNP P42527 MHCKA_DICDI 552 841 DBREF 5E9E B 552 841 UNP P42527 MHCKA_DICDI 552 841 SEQADV 5E9E MET A 535 UNP P42527 EXPRESSION TAG SEQADV 5E9E GLY A 536 UNP P42527 EXPRESSION TAG SEQADV 5E9E GLY A 537 UNP P42527 EXPRESSION TAG SEQADV 5E9E HIS A 538 UNP P42527 EXPRESSION TAG SEQADV 5E9E HIS A 539 UNP P42527 EXPRESSION TAG SEQADV 5E9E HIS A 540 UNP P42527 EXPRESSION TAG SEQADV 5E9E HIS A 541 UNP P42527 EXPRESSION TAG SEQADV 5E9E HIS A 542 UNP P42527 EXPRESSION TAG SEQADV 5E9E HIS A 543 UNP P42527 EXPRESSION TAG SEQADV 5E9E GLY A 544 UNP P42527 EXPRESSION TAG SEQADV 5E9E GLU A 545 UNP P42527 EXPRESSION TAG SEQADV 5E9E ASN A 546 UNP P42527 EXPRESSION TAG SEQADV 5E9E LEU A 547 UNP P42527 EXPRESSION TAG SEQADV 5E9E TYR A 548 UNP P42527 EXPRESSION TAG SEQADV 5E9E PHE A 549 UNP P42527 EXPRESSION TAG SEQADV 5E9E GLN A 550 UNP P42527 EXPRESSION TAG SEQADV 5E9E GLY A 551 UNP P42527 EXPRESSION TAG SEQADV 5E9E MET B 535 UNP P42527 EXPRESSION TAG SEQADV 5E9E GLY B 536 UNP P42527 EXPRESSION TAG SEQADV 5E9E GLY B 537 UNP P42527 EXPRESSION TAG SEQADV 5E9E HIS B 538 UNP P42527 EXPRESSION TAG SEQADV 5E9E HIS B 539 UNP P42527 EXPRESSION TAG SEQADV 5E9E HIS B 540 UNP P42527 EXPRESSION TAG SEQADV 5E9E HIS B 541 UNP P42527 EXPRESSION TAG SEQADV 5E9E HIS B 542 UNP P42527 EXPRESSION TAG SEQADV 5E9E HIS B 543 UNP P42527 EXPRESSION TAG SEQADV 5E9E GLY B 544 UNP P42527 EXPRESSION TAG SEQADV 5E9E GLU B 545 UNP P42527 EXPRESSION TAG SEQADV 5E9E ASN B 546 UNP P42527 EXPRESSION TAG SEQADV 5E9E LEU B 547 UNP P42527 EXPRESSION TAG SEQADV 5E9E TYR B 548 UNP P42527 EXPRESSION TAG SEQADV 5E9E PHE B 549 UNP P42527 EXPRESSION TAG SEQADV 5E9E GLN B 550 UNP P42527 EXPRESSION TAG SEQADV 5E9E GLY B 551 UNP P42527 EXPRESSION TAG SEQRES 1 A 307 MET GLY GLY HIS HIS HIS HIS HIS HIS GLY GLU ASN LEU SEQRES 2 A 307 TYR PHE GLN GLY ILE SER SER GLU THR GLY GLU MET GLY SEQRES 3 A 307 ILE LEU TRP GLU PHE ASP PRO ILE ILE ASN LYS TRP ILE SEQRES 4 A 307 ARG LEU SER MET LYS LEU LYS VAL GLU ARG LYS PRO PHE SEQRES 5 A 307 ALA GLU GLY ALA LEU ARG GLU ALA TYR HIS THR VAL SER SEQRES 6 A 307 LEU GLY VAL GLY THR ASP GLU ASN TYR PRO LEU GLY THR SEQRES 7 A 307 THR THR LYS LEU PHE PRO PRO ILE GLU MET ILE SER PRO SEQRES 8 A 307 ILE SER LYS ASN ASN GLU ALA MET THR GLN LEU LYS ASN SEQRES 9 A 307 GLY THR LYS PHE VAL LEU LYS LEU TYR LYS LYS GLU ALA SEQRES 10 A 307 GLU GLN GLN ALA SER ARG GLU LEU TYR PHE GLU ASP VAL SEQRES 11 A 307 LYS MET GLN MET VAL CYS ARG ASP TRP GLY ASN LYS PHE SEQRES 12 A 307 ASN GLN LYS LYS PRO PRO LYS LYS ILE GLU PHE LEU MET SEQRES 13 A 307 SER TRP VAL VAL GLU LEU ILE ASP ARG SER PRO SER SER SEQRES 14 A 307 ASN GLY GLN PRO ILE LEU CYS SER ILE GLU PRO LEU LEU SEQRES 15 A 307 VAL GLY GLU PHE LYS LYS ASN ASN SER ASN TYR GLY ALA SEQRES 16 A 307 VAL LEU THR ASN ARG SER THR PRO GLN ALA PHE SER HIS SEQRES 17 A 307 PHE THR TYR GLU LEU SER ASN LYS GLN MET ILE VAL VAL SEQRES 18 A 307 ASP ILE GLN GLY VAL ASP ASP LEU TYR THR ASP PRO GLN SEQRES 19 A 307 ILE HIS THR PRO ASP GLY LYS GLY PHE GLY LEU GLY ASN SEQRES 20 A 307 LEU GLY LYS ALA GLY ILE ASN LYS PHE ILE THR THR HIS SEQRES 21 A 307 LYS CYS ASN ALA VAL CYS ALA LEU LEU ASP LEU ASP VAL SEQRES 22 A 307 LYS LEU GLY GLY VAL LEU SER GLY ASN ASN LYS LYS GLN SEQRES 23 A 307 LEU GLN GLN GLY THR MET VAL MET PRO ASP ILE LEU PRO SEQRES 24 A 307 GLU LEU MET PRO SER ASP ASN THR SEQRES 1 B 307 MET GLY GLY HIS HIS HIS HIS HIS HIS GLY GLU ASN LEU SEQRES 2 B 307 TYR PHE GLN GLY ILE SER SER GLU THR GLY GLU MET GLY SEQRES 3 B 307 ILE LEU TRP GLU PHE ASP PRO ILE ILE ASN LYS TRP ILE SEQRES 4 B 307 ARG LEU SER MET LYS LEU LYS VAL GLU ARG LYS PRO PHE SEQRES 5 B 307 ALA GLU GLY ALA LEU ARG GLU ALA TYR HIS THR VAL SER SEQRES 6 B 307 LEU GLY VAL GLY THR ASP GLU ASN TYR PRO LEU GLY THR SEQRES 7 B 307 THR THR LYS LEU PHE PRO PRO ILE GLU MET ILE SER PRO SEQRES 8 B 307 ILE SER LYS ASN ASN GLU ALA MET THR GLN LEU LYS ASN SEQRES 9 B 307 GLY THR LYS PHE VAL LEU LYS LEU TYR LYS LYS GLU ALA SEQRES 10 B 307 GLU GLN GLN ALA SER ARG GLU LEU TYR PHE GLU ASP VAL SEQRES 11 B 307 LYS MET GLN MET VAL CYS ARG ASP TRP GLY ASN LYS PHE SEQRES 12 B 307 ASN GLN LYS LYS PRO PRO LYS LYS ILE GLU PHE LEU MET SEQRES 13 B 307 SER TRP VAL VAL GLU LEU ILE ASP ARG SER PRO SER SER SEQRES 14 B 307 ASN GLY GLN PRO ILE LEU CYS SER ILE GLU PRO LEU LEU SEQRES 15 B 307 VAL GLY GLU PHE LYS LYS ASN ASN SER ASN TYR GLY ALA SEQRES 16 B 307 VAL LEU THR ASN ARG SER THR PRO GLN ALA PHE SER HIS SEQRES 17 B 307 PHE THR TYR GLU LEU SER ASN LYS GLN MET ILE VAL VAL SEQRES 18 B 307 ASP ILE GLN GLY VAL ASP ASP LEU TYR THR ASP PRO GLN SEQRES 19 B 307 ILE HIS THR PRO ASP GLY LYS GLY PHE GLY LEU GLY ASN SEQRES 20 B 307 LEU GLY LYS ALA GLY ILE ASN LYS PHE ILE THR THR HIS SEQRES 21 B 307 LYS CYS ASN ALA VAL CYS ALA LEU LEU ASP LEU ASP VAL SEQRES 22 B 307 LYS LEU GLY GLY VAL LEU SER GLY ASN ASN LYS LYS GLN SEQRES 23 B 307 LEU GLN GLN GLY THR MET VAL MET PRO ASP ILE LEU PRO SEQRES 24 B 307 GLU LEU MET PRO SER ASP ASN THR HET ANP A 901 31 HET ZN A 902 1 HET PO4 A 903 5 HET ANP B 901 31 HET ZN B 902 1 HET PO4 B 903 5 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION FORMUL 3 ANP 2(C10 H17 N6 O12 P3) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 PO4 2(O4 P 3-) FORMUL 9 HOH *213(H2 O) HELIX 1 AA1 PRO A 619 ILE A 623 5 5 HELIX 2 AA2 GLU A 631 LEU A 636 1 6 HELIX 3 AA3 SER A 656 GLN A 679 1 24 HELIX 4 AA4 SER A 735 SER A 748 1 14 HELIX 5 AA5 LEU A 782 HIS A 794 1 13 HELIX 6 AA6 ASN A 797 LEU A 803 1 7 HELIX 7 AA7 PRO B 619 ILE B 623 5 5 HELIX 8 AA8 GLU B 631 LEU B 636 1 6 HELIX 9 AA9 LYS B 648 GLN B 653 1 6 HELIX 10 AB1 SER B 656 GLN B 679 1 24 HELIX 11 AB2 SER B 735 SER B 748 1 14 HELIX 12 AB3 LEU B 782 HIS B 794 1 13 HELIX 13 AB4 ASN B 797 LEU B 803 1 7 SHEET 1 AA1 8 ALA A 587 GLU A 588 0 SHEET 2 AA1 8 ARG A 592 THR A 604 -1 O ALA A 594 N ALA A 587 SHEET 3 AA1 8 LYS A 641 TYR A 647 -1 O PHE A 642 N THR A 597 SHEET 4 AA1 8 ILE A 708 PRO A 714 -1 O GLU A 713 N VAL A 643 SHEET 5 AA1 8 TRP A 692 LEU A 696 -1 N LEU A 696 O ILE A 708 SHEET 6 AA1 8 GLU A 558 ASP A 566 -1 N TRP A 563 O VAL A 693 SHEET 7 AA1 8 LYS A 571 VAL A 581 -1 O LEU A 575 N LEU A 562 SHEET 8 AA1 8 ARG A 592 THR A 604 -1 O LEU A 600 N LYS A 578 SHEET 1 AA2 4 GLU A 687 PHE A 688 0 SHEET 2 AA2 4 LEU A 763 TYR A 764 1 O TYR A 764 N GLU A 687 SHEET 3 AA2 4 GLN A 758 VAL A 760 -1 N VAL A 760 O LEU A 763 SHEET 4 AA2 4 LYS A 721 LYS A 722 -1 N LYS A 721 O GLY A 759 SHEET 1 AA3 2 ILE A 753 VAL A 755 0 SHEET 2 AA3 2 GLN A 768 HIS A 770 -1 O GLN A 768 N VAL A 755 SHEET 1 AA4 8 ALA B 587 GLU B 588 0 SHEET 2 AA4 8 ARG B 592 THR B 604 -1 O ALA B 594 N ALA B 587 SHEET 3 AA4 8 LYS B 641 TYR B 647 -1 O PHE B 642 N THR B 597 SHEET 4 AA4 8 ILE B 708 PRO B 714 -1 O GLU B 713 N VAL B 643 SHEET 5 AA4 8 TRP B 692 LEU B 696 -1 N LEU B 696 O ILE B 708 SHEET 6 AA4 8 GLU B 558 ASP B 566 -1 N TRP B 563 O VAL B 693 SHEET 7 AA4 8 LYS B 571 VAL B 581 -1 O LEU B 579 N GLU B 558 SHEET 8 AA4 8 ARG B 592 THR B 604 -1 O LEU B 600 N LYS B 578 SHEET 1 AA5 4 GLU B 687 PHE B 688 0 SHEET 2 AA5 4 LEU B 763 TYR B 764 1 O TYR B 764 N GLU B 687 SHEET 3 AA5 4 GLN B 758 VAL B 760 -1 N VAL B 760 O LEU B 763 SHEET 4 AA5 4 LYS B 721 LYS B 722 -1 N LYS B 721 O GLY B 759 SHEET 1 AA6 2 ILE B 753 VAL B 755 0 SHEET 2 AA6 2 GLN B 768 HIS B 770 -1 O GLN B 768 N VAL B 755 LINK ND1 HIS A 742 ZN ZN A 902 1555 1555 2.08 LINK NE2 HIS A 794 ZN ZN A 902 1555 1555 2.12 LINK SG CYS A 796 ZN ZN A 902 1555 1555 2.43 LINK SG CYS A 800 ZN ZN A 902 1555 1555 2.21 LINK ND1 HIS B 742 ZN ZN B 902 1555 1555 2.10 LINK NE2 HIS B 794 ZN ZN B 902 1555 1555 2.03 LINK SG CYS B 796 ZN ZN B 902 1555 1555 2.40 LINK SG CYS B 800 ZN ZN B 902 1555 1555 2.38 CISPEP 1 PHE A 617 PRO A 618 0 -0.49 CISPEP 2 PHE B 617 PRO B 618 0 -0.83 SITE 1 AC1 15 ALA A 587 GLU A 588 GLY A 589 ALA A 590 SITE 2 AC1 15 LEU A 591 ARG A 592 VAL A 643 LYS A 645 SITE 3 AC1 15 GLU A 713 PRO A 714 LEU A 716 PHE A 720 SITE 4 AC1 15 GLN A 758 ASP A 766 HOH A1006 SITE 1 AC2 4 HIS A 742 HIS A 794 CYS A 796 CYS A 800 SITE 1 AC3 5 LYS A 684 ARG A 734 SER A 735 THR A 736 SITE 2 AC3 5 HOH A1077 SITE 1 AC4 17 PHE B 586 ALA B 587 GLU B 588 GLY B 589 SITE 2 AC4 17 ALA B 590 LEU B 591 ARG B 592 VAL B 643 SITE 3 AC4 17 LYS B 645 GLU B 713 PRO B 714 LEU B 716 SITE 4 AC4 17 PHE B 720 LYS B 722 GLN B 758 ASP B 766 SITE 5 AC4 17 HOH B1038 SITE 1 AC5 4 HIS B 742 HIS B 794 CYS B 796 CYS B 800 SITE 1 AC6 5 LYS B 684 ARG B 734 SER B 735 THR B 736 SITE 2 AC6 5 HOH B1001 CRYST1 82.601 110.112 78.265 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012106 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009082 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012777 0.00000