HEADER LYASE 15-OCT-15 5E9H TITLE STRUCTURAL INSIGHTS OF ISOCITRATE LYASES FROM FUSARIUM GRAMINEARUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOCITRATE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ICL,ISOCITRASE,ISOCITRATASE,METHYLISOCITRATE LYASE,MICA, COMPND 5 THREO-D(S)-ISOCITRATE GLYOXYLATE-LYASE; COMPND 6 EC: 4.1.3.1,4.1.3.30; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GIBBERELLA ZEAE PH-1; SOURCE 3 ORGANISM_COMMON: WHEAT HEAD BLIGHT FUNGUS; SOURCE 4 ORGANISM_TAXID: 229533; SOURCE 5 STRAIN: PH-1; SOURCE 6 GENE: ICL1, FGSG_09896; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TIM BETA/ALPHA-BARREL, LYASE ACTIVITY, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.PARK,Y.CHO,Y.-H.LEE,Y.-W.LEE,S.RHEE REVDAT 3 08-NOV-23 5E9H 1 JRNL REMARK LINK REVDAT 2 18-MAY-16 5E9H 1 JRNL REVDAT 1 27-APR-16 5E9H 0 JRNL AUTH Y.PARK,Y.CHO,Y.-H.LEE,Y.-W.LEE,S.RHEE JRNL TITL CRYSTAL STRUCTURE AND FUNCTIONAL ANALYSIS OF ISOCITRATE JRNL TITL 2 LYASES FROM MAGNAPORTHE ORYZAE AND FUSARIUM GRAMINEARUM JRNL REF J.STRUCT.BIOL. V. 194 395 2016 JRNL REFN ESSN 1095-8657 JRNL PMID 27016285 JRNL DOI 10.1016/J.JSB.2016.03.019 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 64136 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.4064 - 5.5351 1.00 4659 156 0.1648 0.1722 REMARK 3 2 5.5351 - 4.3968 1.00 4521 137 0.1531 0.1808 REMARK 3 3 4.3968 - 3.8421 1.00 4468 148 0.1547 0.2082 REMARK 3 4 3.8421 - 3.4912 1.00 4449 144 0.1712 0.1910 REMARK 3 5 3.4912 - 3.2412 1.00 4440 143 0.1896 0.2254 REMARK 3 6 3.2412 - 3.0503 1.00 4434 140 0.2133 0.2449 REMARK 3 7 3.0503 - 2.8976 1.00 4402 146 0.2109 0.2686 REMARK 3 8 2.8976 - 2.7716 1.00 4408 137 0.2223 0.2807 REMARK 3 9 2.7716 - 2.6649 1.00 4421 139 0.2219 0.2744 REMARK 3 10 2.6649 - 2.5730 1.00 4403 144 0.2125 0.2764 REMARK 3 11 2.5730 - 2.4926 1.00 4383 139 0.2112 0.2909 REMARK 3 12 2.4926 - 2.4214 1.00 4391 140 0.2262 0.3143 REMARK 3 13 2.4214 - 2.3576 1.00 4377 141 0.2141 0.2561 REMARK 3 14 2.3576 - 2.3000 1.00 4382 144 0.2164 0.2860 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 8411 REMARK 3 ANGLE : 1.124 11394 REMARK 3 CHIRALITY : 0.043 1236 REMARK 3 PLANARITY : 0.006 1480 REMARK 3 DIHEDRAL : 15.136 3086 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E9H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214508. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64136 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1DQU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4M SODIUM MALONATE, PH 8.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.90000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.45000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.45000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 106.90000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 872 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 882 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 741 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 742 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 784 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLN A 4 REMARK 465 ASN A 5 REMARK 465 MET A 6 REMARK 465 THR A 7 REMARK 465 ASN A 8 REMARK 465 PRO A 9 REMARK 465 SER A 10 REMARK 465 GLY A 529 REMARK 465 ILE A 530 REMARK 465 SER A 531 REMARK 465 SER A 532 REMARK 465 THR A 533 REMARK 465 ALA A 534 REMARK 465 ALA A 535 REMARK 465 MET A 536 REMARK 465 GLY A 537 REMARK 465 ALA A 538 REMARK 465 GLY A 539 REMARK 465 VAL A 540 REMARK 465 THR A 541 REMARK 465 GLU A 542 REMARK 465 ASP A 543 REMARK 465 GLN A 544 REMARK 465 PHE A 545 REMARK 465 LYS A 546 REMARK 465 LEU A 547 REMARK 465 GLU A 548 REMARK 465 HIS A 549 REMARK 465 HIS A 550 REMARK 465 HIS A 551 REMARK 465 HIS A 552 REMARK 465 HIS A 553 REMARK 465 HIS A 554 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 GLN B 4 REMARK 465 ASN B 5 REMARK 465 MET B 6 REMARK 465 THR B 7 REMARK 465 ASN B 8 REMARK 465 PRO B 9 REMARK 465 SER B 10 REMARK 465 ILE B 11 REMARK 465 LYS B 213 REMARK 465 LYS B 214 REMARK 465 CYS B 215 REMARK 465 GLY B 216 REMARK 465 HIS B 217 REMARK 465 MET B 218 REMARK 465 ALA B 219 REMARK 465 LEU B 547 REMARK 465 GLU B 548 REMARK 465 HIS B 549 REMARK 465 HIS B 550 REMARK 465 HIS B 551 REMARK 465 HIS B 552 REMARK 465 HIS B 553 REMARK 465 HIS B 554 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 11 CG1 CG2 CD1 REMARK 470 ASN A 12 CG OD1 ND2 REMARK 470 PRO B 13 CG CD REMARK 470 LYS B 546 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 617 O HOH B 728 2.07 REMARK 500 O PRO A 13 N ILE A 15 2.12 REMARK 500 O HOH A 904 O HOH A 931 2.16 REMARK 500 O HOH B 759 O HOH B 764 2.18 REMARK 500 O HOH A 893 O HOH A 925 2.18 REMARK 500 O ILE A 15 N ASP A 17 2.18 REMARK 500 O HOH B 695 O HOH B 778 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 761 O HOH B 787 5679 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 13 -125.14 -70.03 REMARK 500 ASP A 14 -50.89 52.84 REMARK 500 ILE A 15 -77.99 -94.67 REMARK 500 GLU A 16 -59.40 37.04 REMARK 500 ALA A 114 25.57 -151.12 REMARK 500 ASP A 118 -0.47 65.99 REMARK 500 GLU A 160 2.92 -68.15 REMARK 500 ASP A 179 -124.51 51.95 REMARK 500 ASP A 207 36.41 -87.10 REMARK 500 LEU A 247 124.20 -29.90 REMARK 500 VAL A 496 -64.40 -125.76 REMARK 500 ASP A 506 -63.24 -5.46 REMARK 500 PRO B 42 32.76 -90.77 REMARK 500 THR B 113 -16.55 -141.20 REMARK 500 ALA B 114 25.81 -154.04 REMARK 500 ASP B 123 83.54 -66.80 REMARK 500 ASP B 179 -124.08 58.89 REMARK 500 ASP B 207 30.73 -87.93 REMARK 500 LEU B 247 128.05 -34.19 REMARK 500 LYS B 296 125.39 -28.97 REMARK 500 ASN B 313 71.27 43.68 REMARK 500 TRP B 439 61.07 -61.89 REMARK 500 LYS B 440 -49.24 -159.23 REMARK 500 VAL B 496 -65.57 -126.46 REMARK 500 ASP B 506 -69.05 0.97 REMARK 500 THR B 527 50.44 -118.89 REMARK 500 ALA B 538 -119.22 43.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 177 OD2 REMARK 620 2 HOH A 714 O 170.1 REMARK 620 3 HOH A 716 O 82.6 87.5 REMARK 620 4 HOH A 727 O 80.9 99.2 91.7 REMARK 620 5 HOH A 824 O 104.7 85.1 167.1 99.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5E9F RELATED DB: PDB REMARK 900 RELATED ID: 5E9G RELATED DB: PDB DBREF 5E9H A 1 546 UNP Q4HYR2 ACEA_GIBZE 1 546 DBREF 5E9H B 1 546 UNP Q4HYR2 ACEA_GIBZE 1 546 SEQADV 5E9H LEU A 547 UNP Q4HYR2 EXPRESSION TAG SEQADV 5E9H GLU A 548 UNP Q4HYR2 EXPRESSION TAG SEQADV 5E9H HIS A 549 UNP Q4HYR2 EXPRESSION TAG SEQADV 5E9H HIS A 550 UNP Q4HYR2 EXPRESSION TAG SEQADV 5E9H HIS A 551 UNP Q4HYR2 EXPRESSION TAG SEQADV 5E9H HIS A 552 UNP Q4HYR2 EXPRESSION TAG SEQADV 5E9H HIS A 553 UNP Q4HYR2 EXPRESSION TAG SEQADV 5E9H HIS A 554 UNP Q4HYR2 EXPRESSION TAG SEQADV 5E9H LEU B 547 UNP Q4HYR2 EXPRESSION TAG SEQADV 5E9H GLU B 548 UNP Q4HYR2 EXPRESSION TAG SEQADV 5E9H HIS B 549 UNP Q4HYR2 EXPRESSION TAG SEQADV 5E9H HIS B 550 UNP Q4HYR2 EXPRESSION TAG SEQADV 5E9H HIS B 551 UNP Q4HYR2 EXPRESSION TAG SEQADV 5E9H HIS B 552 UNP Q4HYR2 EXPRESSION TAG SEQADV 5E9H HIS B 553 UNP Q4HYR2 EXPRESSION TAG SEQADV 5E9H HIS B 554 UNP Q4HYR2 EXPRESSION TAG SEQRES 1 A 554 MET ALA SER GLN ASN MET THR ASN PRO SER ILE ASN PRO SEQRES 2 A 554 ASP ILE GLU ASP GLU LEU PHE GLN LYS GLU VAL GLU ALA SEQRES 3 A 554 VAL LYS THR TRP TRP SER ASP SER ARG TRP ARG GLN THR SEQRES 4 A 554 LYS ARG PRO PHE THR ALA GLU GLN ILE VAL SER LYS ARG SEQRES 5 A 554 GLY TYR LEU PRO ILE ASP TYR ALA SER ASN THR GLN ALA SEQRES 6 A 554 LYS LYS LEU TRP LYS ILE LEU GLU HIS ARG PHE GLU ASN SEQRES 7 A 554 ARG ASP ALA SER TYR THR TYR GLY CYS LEU GLU PRO THR SEQRES 8 A 554 MET VAL THR GLN MET ALA LYS TYR LEU ASP THR VAL TYR SEQRES 9 A 554 VAL SER GLY TRP GLN SER SER SER THR ALA SER ALA SER SEQRES 10 A 554 ASP GLU PRO GLY PRO ASP LEU ALA ASP TYR PRO TYR THR SEQRES 11 A 554 THR VAL PRO ASN LYS VAL GLY HIS LEU PHE MET ALA GLN SEQRES 12 A 554 LEU PHE HIS ASP ARG LYS GLN ARG GLN GLU ARG LEU SER SEQRES 13 A 554 VAL PRO LYS GLU GLN ARG ALA ASN LEU LEU ASN ILE ASP SEQRES 14 A 554 TYR LEU ARG PRO ILE VAL ALA ASP ALA ASP THR GLY HIS SEQRES 15 A 554 GLY GLY LEU THR ALA VAL MET LYS LEU THR LYS LEU PHE SEQRES 16 A 554 ILE GLU LYS GLY ALA ALA GLY ILE HIS ILE GLU ASP GLN SEQRES 17 A 554 ALA PRO GLY THR LYS LYS CYS GLY HIS MET ALA GLY LYS SEQRES 18 A 554 VAL LEU VAL PRO ILE GLN GLU HIS ILE ASN ARG LEU VAL SEQRES 19 A 554 ALA ILE ARG ALA GLN ALA ASP ILE MET GLY SER ASP LEU SEQRES 20 A 554 LEU ALA ILE ALA ARG THR ASP ALA GLU ALA ALA THR LEU SEQRES 21 A 554 LEU SER THR ASN ILE ASP PRO ARG ASP HIS ALA PHE ILE SEQRES 22 A 554 LEU GLY SER THR ASN SER THR LEU LYS PRO LEU ASN ASP SEQRES 23 A 554 LEU MET ILE ALA ALA GLU ALA THR GLY LYS SER GLY ALA SEQRES 24 A 554 GLU LEU GLN ARG ILE GLU ASP GLU TRP LEU ALA LYS ALA SEQRES 25 A 554 ASN LEU SER SER PHE ASP ASP ALA VAL ALA ALA ALA ILE SEQRES 26 A 554 ASP ALA GLY SER PHE SER ASP LYS ALA GLY ILE LYS GLN SEQRES 27 A 554 GLU TYR THR SER ARG ALA LYS GLY LYS SER ASN PHE GLU SEQRES 28 A 554 ALA ARG ALA VAL ALA ARG GLN LEU LEU GLY ARG ASP ILE SEQRES 29 A 554 PHE PHE ASP TRP ASP ALA PRO ARG THR ARG GLU GLY TYR SEQRES 30 A 554 PHE ARG LEU LYS GLY GLY CYS ASP CYS ALA VAL ASN ARG SEQRES 31 A 554 ALA ILE ALA TYR ALA PRO TYR CYS ASP ALA ILE TRP MET SEQRES 32 A 554 GLU SER LYS LEU PRO ASP PHE ALA GLN ALA GLU GLN PHE SEQRES 33 A 554 ALA GLN GLY VAL HIS ALA VAL TRP PRO GLU LYS LYS LEU SEQRES 34 A 554 ALA TYR ASN LEU SER PRO SER PHE ASN TRP LYS THR ALA SEQRES 35 A 554 MET PRO ARG ASP GLU GLN GLU THR TYR ILE ARG ARG LEU SEQRES 36 A 554 ALA LYS LEU GLY TYR CYS TRP GLN PHE ILE THR LEU ALA SEQRES 37 A 554 GLY LEU HIS THR THR ALA LEU ILE SER ASP GLN PHE ALA SEQRES 38 A 554 LYS ALA TYR SER THR VAL GLY MET ARG ALA TYR GLY GLU SEQRES 39 A 554 LEU VAL GLN GLU PRO GLU MET ASP GLN LYS VAL ASP VAL SEQRES 40 A 554 VAL LYS HIS GLN LYS TRP SER GLY ALA THR TYR VAL ASP SEQRES 41 A 554 GLU LEU GLN LYS MET VAL THR GLY GLY ILE SER SER THR SEQRES 42 A 554 ALA ALA MET GLY ALA GLY VAL THR GLU ASP GLN PHE LYS SEQRES 43 A 554 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 554 MET ALA SER GLN ASN MET THR ASN PRO SER ILE ASN PRO SEQRES 2 B 554 ASP ILE GLU ASP GLU LEU PHE GLN LYS GLU VAL GLU ALA SEQRES 3 B 554 VAL LYS THR TRP TRP SER ASP SER ARG TRP ARG GLN THR SEQRES 4 B 554 LYS ARG PRO PHE THR ALA GLU GLN ILE VAL SER LYS ARG SEQRES 5 B 554 GLY TYR LEU PRO ILE ASP TYR ALA SER ASN THR GLN ALA SEQRES 6 B 554 LYS LYS LEU TRP LYS ILE LEU GLU HIS ARG PHE GLU ASN SEQRES 7 B 554 ARG ASP ALA SER TYR THR TYR GLY CYS LEU GLU PRO THR SEQRES 8 B 554 MET VAL THR GLN MET ALA LYS TYR LEU ASP THR VAL TYR SEQRES 9 B 554 VAL SER GLY TRP GLN SER SER SER THR ALA SER ALA SER SEQRES 10 B 554 ASP GLU PRO GLY PRO ASP LEU ALA ASP TYR PRO TYR THR SEQRES 11 B 554 THR VAL PRO ASN LYS VAL GLY HIS LEU PHE MET ALA GLN SEQRES 12 B 554 LEU PHE HIS ASP ARG LYS GLN ARG GLN GLU ARG LEU SER SEQRES 13 B 554 VAL PRO LYS GLU GLN ARG ALA ASN LEU LEU ASN ILE ASP SEQRES 14 B 554 TYR LEU ARG PRO ILE VAL ALA ASP ALA ASP THR GLY HIS SEQRES 15 B 554 GLY GLY LEU THR ALA VAL MET LYS LEU THR LYS LEU PHE SEQRES 16 B 554 ILE GLU LYS GLY ALA ALA GLY ILE HIS ILE GLU ASP GLN SEQRES 17 B 554 ALA PRO GLY THR LYS LYS CYS GLY HIS MET ALA GLY LYS SEQRES 18 B 554 VAL LEU VAL PRO ILE GLN GLU HIS ILE ASN ARG LEU VAL SEQRES 19 B 554 ALA ILE ARG ALA GLN ALA ASP ILE MET GLY SER ASP LEU SEQRES 20 B 554 LEU ALA ILE ALA ARG THR ASP ALA GLU ALA ALA THR LEU SEQRES 21 B 554 LEU SER THR ASN ILE ASP PRO ARG ASP HIS ALA PHE ILE SEQRES 22 B 554 LEU GLY SER THR ASN SER THR LEU LYS PRO LEU ASN ASP SEQRES 23 B 554 LEU MET ILE ALA ALA GLU ALA THR GLY LYS SER GLY ALA SEQRES 24 B 554 GLU LEU GLN ARG ILE GLU ASP GLU TRP LEU ALA LYS ALA SEQRES 25 B 554 ASN LEU SER SER PHE ASP ASP ALA VAL ALA ALA ALA ILE SEQRES 26 B 554 ASP ALA GLY SER PHE SER ASP LYS ALA GLY ILE LYS GLN SEQRES 27 B 554 GLU TYR THR SER ARG ALA LYS GLY LYS SER ASN PHE GLU SEQRES 28 B 554 ALA ARG ALA VAL ALA ARG GLN LEU LEU GLY ARG ASP ILE SEQRES 29 B 554 PHE PHE ASP TRP ASP ALA PRO ARG THR ARG GLU GLY TYR SEQRES 30 B 554 PHE ARG LEU LYS GLY GLY CYS ASP CYS ALA VAL ASN ARG SEQRES 31 B 554 ALA ILE ALA TYR ALA PRO TYR CYS ASP ALA ILE TRP MET SEQRES 32 B 554 GLU SER LYS LEU PRO ASP PHE ALA GLN ALA GLU GLN PHE SEQRES 33 B 554 ALA GLN GLY VAL HIS ALA VAL TRP PRO GLU LYS LYS LEU SEQRES 34 B 554 ALA TYR ASN LEU SER PRO SER PHE ASN TRP LYS THR ALA SEQRES 35 B 554 MET PRO ARG ASP GLU GLN GLU THR TYR ILE ARG ARG LEU SEQRES 36 B 554 ALA LYS LEU GLY TYR CYS TRP GLN PHE ILE THR LEU ALA SEQRES 37 B 554 GLY LEU HIS THR THR ALA LEU ILE SER ASP GLN PHE ALA SEQRES 38 B 554 LYS ALA TYR SER THR VAL GLY MET ARG ALA TYR GLY GLU SEQRES 39 B 554 LEU VAL GLN GLU PRO GLU MET ASP GLN LYS VAL ASP VAL SEQRES 40 B 554 VAL LYS HIS GLN LYS TRP SER GLY ALA THR TYR VAL ASP SEQRES 41 B 554 GLU LEU GLN LYS MET VAL THR GLY GLY ILE SER SER THR SEQRES 42 B 554 ALA ALA MET GLY ALA GLY VAL THR GLU ASP GLN PHE LYS SEQRES 43 B 554 LEU GLU HIS HIS HIS HIS HIS HIS HET MN A 601 1 HET MLI A 602 7 HETNAM MN MANGANESE (II) ION HETNAM MLI MALONATE ION FORMUL 3 MN MN 2+ FORMUL 4 MLI C3 H2 O4 2- FORMUL 5 HOH *420(H2 O) HELIX 1 AA1 GLU A 16 SER A 32 1 17 HELIX 2 AA2 ASP A 33 ARG A 37 5 5 HELIX 3 AA3 THR A 44 SER A 50 1 7 HELIX 4 AA4 TYR A 59 ASN A 78 1 20 HELIX 5 AA5 GLU A 89 ALA A 97 1 9 HELIX 6 AA6 SER A 106 ALA A 114 1 9 HELIX 7 AA7 THR A 130 SER A 156 1 27 HELIX 8 AA8 PRO A 158 ARG A 162 5 5 HELIX 9 AA9 GLY A 184 GLY A 199 1 16 HELIX 10 AB1 PRO A 225 GLY A 244 1 20 HELIX 11 AB2 ASP A 266 ALA A 271 1 6 HELIX 12 AB3 PRO A 283 THR A 294 1 12 HELIX 13 AB4 SER A 297 ALA A 312 1 16 HELIX 14 AB5 SER A 316 GLY A 328 1 13 HELIX 15 AB6 ASP A 332 LYS A 345 1 14 HELIX 16 AB7 SER A 348 GLY A 361 1 14 HELIX 17 AB8 GLY A 383 ALA A 395 1 13 HELIX 18 AB9 PRO A 396 CYS A 398 5 3 HELIX 19 AC1 ASP A 409 ALA A 422 1 14 HELIX 20 AC2 ASN A 438 MET A 443 1 6 HELIX 21 AC3 PRO A 444 GLU A 449 1 6 HELIX 22 AC4 THR A 450 LEU A 458 1 9 HELIX 23 AC5 LEU A 467 GLY A 488 1 22 HELIX 24 AC6 GLY A 488 VAL A 496 1 9 HELIX 25 AC7 VAL A 496 GLN A 503 1 8 HELIX 26 AC8 VAL A 505 VAL A 508 5 4 HELIX 27 AC9 LYS A 509 SER A 514 1 6 HELIX 28 AD1 GLY A 515 VAL A 526 1 12 HELIX 29 AD2 PRO B 13 SER B 32 1 20 HELIX 30 AD3 ASP B 33 ARG B 37 5 5 HELIX 31 AD4 THR B 44 SER B 50 1 7 HELIX 32 AD5 TYR B 59 ASN B 78 1 20 HELIX 33 AD6 GLU B 89 ALA B 97 1 9 HELIX 34 AD7 SER B 106 ALA B 114 1 9 HELIX 35 AD8 THR B 130 SER B 156 1 27 HELIX 36 AD9 PRO B 158 ARG B 162 5 5 HELIX 37 AE1 GLY B 184 GLY B 199 1 16 HELIX 38 AE2 PRO B 225 MET B 243 1 19 HELIX 39 AE3 ASP B 266 ILE B 273 5 8 HELIX 40 AE4 PRO B 283 THR B 294 1 12 HELIX 41 AE5 GLY B 298 ALA B 312 1 15 HELIX 42 AE6 SER B 316 GLY B 328 1 13 HELIX 43 AE7 ASP B 332 LYS B 345 1 14 HELIX 44 AE8 SER B 348 GLY B 361 1 14 HELIX 45 AE9 GLY B 383 ALA B 395 1 13 HELIX 46 AF1 PRO B 396 CYS B 398 5 3 HELIX 47 AF2 ASP B 409 ALA B 422 1 14 HELIX 48 AF3 PRO B 444 LEU B 458 1 15 HELIX 49 AF4 LEU B 467 GLY B 488 1 22 HELIX 50 AF5 MET B 489 VAL B 496 1 8 HELIX 51 AF6 VAL B 496 GLN B 503 1 8 HELIX 52 AF7 VAL B 505 VAL B 508 5 4 HELIX 53 AF8 LYS B 509 SER B 514 1 6 HELIX 54 AF9 GLY B 515 THR B 527 1 13 HELIX 55 AG1 VAL B 540 PHE B 545 5 6 SHEET 1 AA1 3 SER A 82 TYR A 85 0 SHEET 2 AA1 3 TYR A 460 ILE A 465 1 O CYS A 461 N SER A 82 SHEET 3 AA1 3 LEU A 429 ASN A 432 1 N TYR A 431 O PHE A 464 SHEET 1 AA2 5 VAL A 103 VAL A 105 0 SHEET 2 AA2 5 ILE A 174 ASP A 177 1 O VAL A 175 N VAL A 103 SHEET 3 AA2 5 GLY A 202 GLU A 206 1 O GLY A 202 N ALA A 176 SHEET 4 AA2 5 LEU A 248 THR A 253 1 O ILE A 250 N ILE A 203 SHEET 5 AA2 5 ALA A 400 MET A 403 1 O TRP A 402 N THR A 253 SHEET 1 AA3 3 VAL A 222 LEU A 223 0 SHEET 2 AA3 3 LEU A 260 LEU A 261 1 O LEU A 260 N LEU A 223 SHEET 3 AA3 3 PHE A 378 ARG A 379 -1 O PHE A 378 N LEU A 261 SHEET 1 AA4 8 SER B 82 TYR B 85 0 SHEET 2 AA4 8 TYR B 460 ILE B 465 1 O CYS B 461 N SER B 82 SHEET 3 AA4 8 LEU B 429 ASN B 432 1 N TYR B 431 O TRP B 462 SHEET 4 AA4 8 ALA B 400 MET B 403 1 N ILE B 401 O ALA B 430 SHEET 5 AA4 8 LEU B 248 THR B 253 1 N THR B 253 O TRP B 402 SHEET 6 AA4 8 GLY B 202 GLU B 206 1 N ILE B 203 O ILE B 250 SHEET 7 AA4 8 ILE B 174 ASP B 177 1 N ALA B 176 O GLY B 202 SHEET 8 AA4 8 VAL B 103 VAL B 105 1 N VAL B 103 O VAL B 175 SHEET 1 AA5 3 VAL B 222 LEU B 223 0 SHEET 2 AA5 3 LEU B 260 LEU B 261 1 O LEU B 260 N LEU B 223 SHEET 3 AA5 3 PHE B 378 ARG B 379 -1 O PHE B 378 N LEU B 261 LINK OD2 ASP A 177 MN MN A 601 1555 1555 2.36 LINK MN MN A 601 O HOH A 714 1555 1555 2.37 LINK MN MN A 601 O HOH A 716 1555 1555 2.62 LINK MN MN A 601 O HOH A 727 1555 1555 2.48 LINK MN MN A 601 O HOH A 824 1555 1555 2.45 SITE 1 AC1 6 ASP A 177 HOH A 714 HOH A 716 HOH A 719 SITE 2 AC1 6 HOH A 727 HOH A 824 SITE 1 AC2 12 TRP A 108 CYS A 215 HIS A 217 ASN A 432 SITE 2 AC2 12 SER A 434 SER A 436 THR A 466 LEU A 467 SITE 3 AC2 12 HOH A 708 HOH A 714 HOH A 719 HOH A 824 CRYST1 124.475 124.475 160.350 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008034 0.004638 0.000000 0.00000 SCALE2 0.000000 0.009277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006236 0.00000