HEADER OXIDOREDUCTASE 15-OCT-15 5E9N TITLE STECCHERINUM MURASHKINSKYI LACCASE AT 0.95 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACCASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 20-546; COMPND 5 EC: 1.10.3.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STECCHERINUM MURASHKINSKYI; SOURCE 3 ORGANISM_TAXID: 627145 KEYWDS LACCASE, OXIDOREDUCTASE, ENZYME EXPDTA X-RAY DIFFRACTION AUTHOR K.M.POLYAKOV,O.A.GLAZUNOVA,T.V.FEDOROVA,O.V.KOROLEVA REVDAT 6 10-JAN-24 5E9N 1 HETSYN REVDAT 5 29-JUL-20 5E9N 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 17-JUL-19 5E9N 1 REMARK REVDAT 3 10-JUL-19 5E9N 1 REMARK REVDAT 2 01-AUG-18 5E9N 1 JRNL REMARK REVDAT 1 23-DEC-15 5E9N 0 JRNL AUTH O.A.GLAZUNOVA,K.M.POLYAKOV,K.V.MOISEENKO,S.A.KURZEEV, JRNL AUTH 2 T.V.FEDOROVA JRNL TITL STRUCTURE-FUNCTION STUDY OF TWO NEW MIDDLE-REDOX POTENTIAL JRNL TITL 2 LACCASES FROM BASIDIOMYCETES ANTRODIELLA FAGINEA AND JRNL TITL 3 STECCHERINUM MURASHKINSKYI. JRNL REF INT. J. BIOL. MACROMOL. V. 118 406 2018 JRNL REFN ISSN 1879-0003 JRNL PMID 29890251 JRNL DOI 10.1016/J.IJBIOMAC.2018.06.038 REMARK 2 REMARK 2 RESOLUTION. 0.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 301501 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.122 REMARK 3 R VALUE (WORKING SET) : 0.121 REMARK 3 FREE R VALUE : 0.139 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 15916 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 0.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 21636 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 1097 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3739 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 731 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.016 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.017 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.015 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.635 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.985 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.980 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4010 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3309 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5493 ; 1.804 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7620 ; 0.910 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 496 ; 6.896 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;35.732 ;25.189 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 539 ;10.993 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;22.260 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 626 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4567 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 860 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1986 ; 1.144 ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1981 ; 1.114 ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2482 ; 1.550 ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2478 ; 1.498 ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2024 ; 1.913 ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1999 ; 1.798 ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2982 ; 2.295 ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5528 ; 3.440 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5011 ; 2.855 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3882 ; 5.387 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 82 ;26.915 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4254 ; 9.682 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5E9N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000213965. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.803 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 981844 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.950 REMARK 200 RESOLUTION RANGE LOW (A) : 8.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.66800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3FPX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.5, 0.2 AMMONIUN REMARK 280 SULPHATE, 25% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.75500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.52000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.63500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.52000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.75500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.63500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 496 REMARK 465 ILE A 497 REMARK 465 SER A 498 REMARK 465 THR A 499 REMARK 465 ALA A 500 REMARK 465 THR A 501 REMARK 465 ARG A 502 REMARK 465 GLN A 503 REMARK 465 ASP A 504 REMARK 465 PHE A 505 REMARK 465 GLN A 506 REMARK 465 ILE A 507 REMARK 465 LEU A 508 REMARK 465 CYS A 509 REMARK 465 ILE A 510 REMARK 465 CYS A 511 REMARK 465 GLY A 512 REMARK 465 ILE A 513 REMARK 465 LEU A 514 REMARK 465 HIS A 515 REMARK 465 VAL A 516 REMARK 465 ASN A 517 REMARK 465 PHE A 518 REMARK 465 ARG A 519 REMARK 465 GLN A 520 REMARK 465 GLU A 521 REMARK 465 GLU A 522 REMARK 465 ARG A 523 REMARK 465 CYS A 524 REMARK 465 GLY A 525 REMARK 465 ILE A 526 REMARK 465 SER A 527 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 493 CG CD OE1 NE2 REMARK 470 HIS A 495 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 409 CA - CB - CG2 ANGL. DEV. = 9.9 DEGREES REMARK 500 PHE A 450 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 59 131.18 77.50 REMARK 500 SER A 114 -141.20 50.95 REMARK 500 ASP A 209 -73.94 -159.20 REMARK 500 ALA A 244 -5.32 82.40 REMARK 500 VAL A 420 -63.32 -109.40 REMARK 500 ASN A 421 40.07 -143.30 REMARK 500 ASN A 436 56.36 -144.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1428 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1429 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A1430 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A1431 DISTANCE = 8.47 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG6 A 610 REMARK 610 PG6 A 611 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 603 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 65 NE2 REMARK 620 2 HIS A 400 NE2 168.8 REMARK 620 3 HOH A 996 O 94.7 96.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 602 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 67 ND1 REMARK 620 2 HIS A 110 NE2 120.5 REMARK 620 3 HIS A 454 NE2 103.3 107.3 REMARK 620 4 HOH A1125 O 129.3 102.1 87.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 602 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 67 ND1 REMARK 620 2 HIS A 110 NE2 144.2 REMARK 620 3 HIS A 454 NE2 108.6 106.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 601 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 112 NE2 REMARK 620 2 HIS A 402 NE2 110.8 REMARK 620 3 HIS A 452 NE2 121.9 125.6 REMARK 620 4 HOH A1125 O 86.5 100.8 95.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 601 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 112 NE2 REMARK 620 2 HIS A 402 NE2 100.9 REMARK 620 3 HIS A 452 NE2 101.5 107.8 REMARK 620 4 HOH A1125 O 102.4 130.1 109.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 605 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 317 O REMARK 620 2 HOH A 959 O 85.8 REMARK 620 3 HOH A1144 O 90.4 174.9 REMARK 620 4 HOH A1171 O 77.7 94.6 87.8 REMARK 620 5 HOH A1243 O 104.3 89.2 88.6 175.9 REMARK 620 6 HOH A1390 O 168.0 89.6 94.7 91.6 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 604 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 397 ND1 REMARK 620 2 CYS A 453 SG 123.5 REMARK 620 3 HIS A 458 ND1 104.6 131.6 REMARK 620 N 1 2 DBREF 5E9N A 1 527 UNP I1VE66 I1VE66_9APHY 20 546 SEQRES 1 A 527 ALA GLN ILE GLY PRO VAL THR ASP LEU HIS ILE THR ASN SEQRES 2 A 527 ALA ASN ILE SER PRO ASP GLY PHE SER ARG PRO ALA VAL SEQRES 3 A 527 LEU ALA GLY GLY THR PHE PRO GLY PRO THR ILE ALA GLY SEQRES 4 A 527 ASN THR GLY ASP ASN PHE GLN ILE THR VAL PHE ASN ASP SEQRES 5 A 527 LEU THR ASP PRO SER MET LEU THR ASP THR SER ILE HIS SEQRES 6 A 527 TRP HIS GLY LEU PHE GLN LYS GLY THR ASN TRP ALA ASP SEQRES 7 A 527 GLY PRO ALA PHE VAL THR GLN CYS PRO ILE ILE THR GLY SEQRES 8 A 527 GLN SER PHE ASP TYR ASN PHE ASN VAL PRO GLY GLN ALA SEQRES 9 A 527 GLY THR PHE TRP TYR HIS SER HIS LEU SER THR GLN TYR SEQRES 10 A 527 CYS ASP GLY LEU ARG GLY PRO PHE VAL VAL TYR ASP PRO SEQRES 11 A 527 ASN ASP PRO ASN ALA SER LEU TYR ASP VAL ASP ASP ASP SEQRES 12 A 527 THR THR ILE ILE THR LEU ALA ASP TRP TYR HIS THR LEU SEQRES 13 A 527 ALA GLN GLN GLU PRO ILE GLY ALA ALA ILE THR ALA ASP SEQRES 14 A 527 ALA THR LEU ILE ASN GLY LEU GLY ARG SER PHE THR ASN SEQRES 15 A 527 THR THR ALA SER PRO LEU SER VAL ILE THR VAL GLN SER SEQRES 16 A 527 GLY LYS ARG TYR ARG MET ARG LEU VAL SER ILE SER CYS SEQRES 17 A 527 ASP PRO ASN TYR LEU PHE SER ILE ASP GLY HIS ASP MET SEQRES 18 A 527 THR ILE ILE GLU VAL ASP GLY VAL ASN SER GLN GLN LEU SEQRES 19 A 527 THR VAL ASP GLN ILE GLN ILE PHE ALA ALA GLN ARG TYR SEQRES 20 A 527 SER PHE VAL LEU ASN ALA ASN GLN PRO VAL GLY ASN TYR SEQRES 21 A 527 TRP ILE ARG ALA GLN PRO ASN SER GLY GLY GLN GLY PHE SEQRES 22 A 527 ASP GLY GLY ILE ASN SER ALA ILE LEU ARG TYR GLU GLY SEQRES 23 A 527 ALA THR VAL GLU ASP PRO THR THR THR ALA PRO THR THR SEQRES 24 A 527 PHE SER ASN PRO LEU VAL GLU THR ASP LEU HIS PRO LEU SEQRES 25 A 527 ALA ASP LEU GLY VAL PRO GLY GLN PRO PHE ARG GLY GLY SEQRES 26 A 527 ALA ASP ASP PRO LEU VAL LEU ASN LEU ALA PHE ALA ASN SEQRES 27 A 527 GLY ARG PHE SER ILE ASP GLY VAL SER PHE VAL PRO PRO SEQRES 28 A 527 THR VAL PRO VAL LEU LEU GLN ILE LEU SER GLY ALA GLN SEQRES 29 A 527 ASN ALA GLN ASP LEU LEU PRO ALA GLY SER VAL ILE SER SEQRES 30 A 527 LEU PRO SER ASN SER VAL ILE GLU VAL ALA LEU PRO ALA SEQRES 31 A 527 GLY ALA ALA GLY GLY PRO HIS PRO PHE HIS LEU HIS GLY SEQRES 32 A 527 HIS ASN PHE ALA VAL VAL GLN SER ALA ASN ASN ALA THR SEQRES 33 A 527 PRO ASN TYR VAL ASN PRO ILE TRP ARG ASP THR VAL SER SEQRES 34 A 527 ILE GLY GLY THR GLY ASP ASN VAL THR ILE ARG PHE THR SEQRES 35 A 527 THR ASN ASN PRO GLY PRO TRP PHE LEU HIS CYS HIS ILE SEQRES 36 A 527 ASP TRP HIS LEU GLU ALA GLY PHE ALA ILE VAL PHE ALA SEQRES 37 A 527 GLU ASP ILE PRO ASP THR ALA SER ALA ASN PRO VAL PRO SEQRES 38 A 527 GLN ALA TRP SER ASP LEU CYS PRO ALA TYR ASP GLN ALA SEQRES 39 A 527 HIS ASN ILE SER THR ALA THR ARG GLN ASP PHE GLN ILE SEQRES 40 A 527 LEU CYS ILE CYS GLY ILE LEU HIS VAL ASN PHE ARG GLN SEQRES 41 A 527 GLU GLU ARG CYS GLY ILE SER MODRES 5E9N NAG B 1 NAG -D MODRES 5E9N NAG C 1 NAG -D MODRES 5E9N NAG C 2 NAG -D MODRES 5E9N NAG B 2 NAG -D HET NAG B 1 25 HET NAG B 2 14 HET NAG C 1 24 HET NAG C 2 25 HET CU A 601 2 HET CU A 602 2 HET CU A 603 1 HET CU A 604 1 HET NA A 605 1 HET PG6 A 610 9 HET PG6 A 611 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CU COPPER (II) ION HETNAM NA SODIUM ION HETNAM PG6 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]- HETNAM 2 PG6 ETHOXY}-ETHANE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 4 CU 4(CU 2+) FORMUL 8 NA NA 1+ FORMUL 9 PG6 2(C12 H26 O6) FORMUL 11 HOH *731(H2 O) HELIX 1 AA1 ASP A 55 LEU A 59 5 5 HELIX 2 AA2 THR A 74 ASP A 78 5 5 HELIX 3 AA3 THR A 115 GLY A 120 5 6 HELIX 4 AA4 ASN A 134 TYR A 138 5 5 HELIX 5 AA5 ASP A 142 THR A 144 5 3 HELIX 6 AA6 LEU A 156 GLU A 160 5 5 HELIX 7 AA7 PHE A 273 ILE A 277 5 5 HELIX 8 AA8 VAL A 305 LEU A 309 5 5 HELIX 9 AA9 PRO A 354 SER A 361 1 8 HELIX 10 AB1 ASN A 365 LEU A 369 5 5 HELIX 11 AB2 ILE A 455 ALA A 461 1 7 HELIX 12 AB3 ASP A 470 ASN A 478 1 9 HELIX 13 AB4 PRO A 481 ASP A 486 1 6 HELIX 14 AB5 ASP A 486 HIS A 495 1 10 SHEET 1 AA1 4 ARG A 23 ALA A 28 0 SHEET 2 AA1 4 VAL A 6 ILE A 16 -1 N THR A 12 O LEU A 27 SHEET 3 AA1 4 ASN A 44 ASN A 51 1 O PHE A 50 N ILE A 11 SHEET 4 AA1 4 SER A 93 ASN A 99 -1 O PHE A 94 N VAL A 49 SHEET 1 AA2 4 ILE A 37 ASN A 40 0 SHEET 2 AA2 4 ARG A 122 TYR A 128 1 O TYR A 128 N GLY A 39 SHEET 3 AA2 4 GLY A 105 SER A 111 -1 N PHE A 107 O PHE A 125 SHEET 4 AA2 4 ILE A 64 HIS A 67 -1 N HIS A 65 O HIS A 110 SHEET 1 AA3 6 ALA A 170 ILE A 173 0 SHEET 2 AA3 6 ILE A 146 TRP A 152 -1 N ALA A 150 O LEU A 172 SHEET 3 AA3 6 ARG A 198 SER A 205 1 O VAL A 204 N ILE A 147 SHEET 4 AA3 6 ARG A 246 ASN A 252 -1 O TYR A 247 N LEU A 203 SHEET 5 AA3 6 MET A 221 VAL A 226 -1 N THR A 222 O VAL A 250 SHEET 6 AA3 6 VAL A 229 VAL A 236 -1 O LEU A 234 N ILE A 223 SHEET 1 AA4 5 VAL A 190 VAL A 193 0 SHEET 2 AA4 5 SER A 279 TYR A 284 1 O ILE A 281 N ILE A 191 SHEET 3 AA4 5 ASN A 259 PRO A 266 -1 N TYR A 260 O LEU A 282 SHEET 4 AA4 5 TYR A 212 ILE A 216 -1 N SER A 215 O ARG A 263 SHEET 5 AA4 5 ILE A 239 ILE A 241 -1 O ILE A 239 N PHE A 214 SHEET 1 AA5 5 ASP A 328 VAL A 331 0 SHEET 2 AA5 5 VAL A 383 ALA A 387 1 O GLU A 385 N LEU A 330 SHEET 3 AA5 5 THR A 438 THR A 442 -1 O PHE A 441 N ILE A 384 SHEET 4 AA5 5 PHE A 406 GLN A 410 -1 N ALA A 407 O ARG A 440 SHEET 5 AA5 5 TRP A 424 ARG A 425 -1 O ARG A 425 N PHE A 406 SHEET 1 AA6 2 LEU A 334 ALA A 337 0 SHEET 2 AA6 2 ARG A 340 ILE A 343 -1 O ARG A 340 N ALA A 337 SHEET 1 AA7 5 VAL A 375 LEU A 378 0 SHEET 2 AA7 5 ALA A 464 GLU A 469 1 O VAL A 466 N ILE A 376 SHEET 3 AA7 5 GLY A 447 CYS A 453 -1 N TRP A 449 O PHE A 467 SHEET 4 AA7 5 PRO A 398 LEU A 401 -1 N HIS A 400 O HIS A 452 SHEET 5 AA7 5 THR A 427 SER A 429 -1 O VAL A 428 N PHE A 399 SSBOND 1 CYS A 86 CYS A 488 1555 1555 2.17 SSBOND 2 CYS A 118 CYS A 208 1555 1555 2.02 LINK ND2 ASN A 414 C1 NAG C 1 1555 1555 1.42 LINK ND2 ASN A 436 C1 NAG B 1 1555 1555 1.42 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.38 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.37 LINK NE2 HIS A 65 CU CU A 603 1555 1555 1.87 LINK ND1 HIS A 67 CU B CU A 602 1555 1555 2.14 LINK ND1 HIS A 67 CU A CU A 602 1555 1555 1.87 LINK NE2 HIS A 110 CU B CU A 602 1555 1555 2.07 LINK NE2 HIS A 110 CU A CU A 602 1555 1555 1.96 LINK NE2 HIS A 112 CU A CU A 601 1555 1555 1.99 LINK NE2 HIS A 112 CU B CU A 601 1555 1555 2.18 LINK O VAL A 317 NA NA A 605 1555 1555 2.30 LINK ND1 HIS A 397 CU CU A 604 1555 1555 1.99 LINK NE2 HIS A 400 CU CU A 603 1555 1555 1.87 LINK NE2 HIS A 402 CU A CU A 601 1555 1555 1.95 LINK NE2 HIS A 402 CU B CU A 601 1555 1555 2.02 LINK NE2 HIS A 452 CU A CU A 601 1555 1555 1.89 LINK NE2 HIS A 452 CU B CU A 601 1555 1555 2.20 LINK SG CYS A 453 CU CU A 604 1555 1555 2.17 LINK NE2 HIS A 454 CU B CU A 602 1555 1555 1.95 LINK NE2 HIS A 454 CU A CU A 602 1555 1555 2.07 LINK ND1 HIS A 458 CU CU A 604 1555 1555 1.98 LINK CU A CU A 601 O HOH A1125 1555 1555 2.46 LINK CU B CU A 601 O HOH A1125 1555 1555 1.74 LINK CU B CU A 602 O HOH A1125 1555 1555 2.23 LINK CU CU A 603 O HOH A 996 1555 1555 2.53 LINK NA NA A 605 O HOH A 959 1555 1555 2.26 LINK NA NA A 605 O HOH A1144 1555 1555 2.41 LINK NA NA A 605 O HOH A1171 1555 1555 2.41 LINK NA NA A 605 O HOH A1243 1555 1555 2.45 LINK NA NA A 605 O HOH A1390 1555 1555 2.35 CISPEP 1 GLY A 4 PRO A 5 0 8.77 CISPEP 2 PHE A 32 PRO A 33 0 -14.93 CISPEP 3 LEU A 370 PRO A 371 0 7.59 CISPEP 4 GLY A 395 PRO A 396 0 6.00 CRYST1 55.510 83.270 111.040 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018015 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012009 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009006 0.00000