HEADER HYDROLASE 22-OCT-15 5EE9 TITLE COMPLEX STRUCTURE OF OSYCHF1 WITH GMP-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: OBG-LIKE ATPASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RIBOSOME-BINDING ATPASE YCHF,OSYCHF1; COMPND 5 EC: 3.6.5.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA SUBSP. JAPONICA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: OS08G0199300, OSYCHF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSETA-HISSUMO KEYWDS OSYCHF1, GTP-BINDING PROTEIN, ATP, AMP-PNP, YCHF-TYPE, P-LOOP NTPASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.LI,Z.CHEN REVDAT 3 20-MAR-24 5EE9 1 JRNL REMARK LINK REVDAT 2 23-MAR-16 5EE9 1 JRNL REVDAT 1 24-FEB-16 5EE9 0 JRNL AUTH M.-Y.CHEUNG,X.LI,R.MIAO,Y.-H.FONG,K.-P.LI,Y.-L.YUNG,M.-H.YU, JRNL AUTH 2 K.-B.WONG,Z.CHEN,H.-M.LAM JRNL TITL ATP BINDING BY THE P-LOOP NTPASE OSYCHF1 (AN UNCONVENTIONAL JRNL TITL 2 G PROTEIN) CONTRIBUTES TO BIOTIC BUT NOT ABIOTIC STRESS JRNL TITL 3 RESPONSES JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 2648 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 26912459 JRNL DOI 10.1073/PNAS.1522966113 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 22711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1133 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1384 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5433 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.371 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.275 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.045 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5594 ; 0.005 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7592 ; 0.894 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 710 ; 4.637 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 237 ;32.562 ;24.937 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 871 ;15.250 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;12.120 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 854 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4229 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5EE9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214776. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24080 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.22550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.86800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.03200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.86800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.22550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.03200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 PRO A 3 REMARK 465 LYS A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 ASP A 9 REMARK 465 ALA A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 GLY A 101 REMARK 465 ALA A 102 REMARK 465 HIS A 103 REMARK 465 ALA A 104 REMARK 465 GLY A 105 REMARK 465 GLU A 106 REMARK 465 GLY A 107 REMARK 465 LEU A 108 REMARK 465 GLY A 109 REMARK 465 LYS A 132 REMARK 465 GLU A 133 REMARK 465 VAL A 134 REMARK 465 THR A 135 REMARK 465 HIS A 136 REMARK 465 ILE A 137 REMARK 465 ASP A 138 REMARK 465 ASP A 139 REMARK 465 VAL A 388 REMARK 465 SER A 389 REMARK 465 GLY A 390 REMARK 465 GLY A 391 REMARK 465 GLY A 392 REMARK 465 LYS A 393 REMARK 465 LYS A 394 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 PRO B 3 REMARK 465 LYS B 4 REMARK 465 ALA B 5 REMARK 465 SER B 6 REMARK 465 LYS B 7 REMARK 465 LYS B 8 REMARK 465 ASP B 9 REMARK 465 ALA B 10 REMARK 465 ALA B 11 REMARK 465 PRO B 12 REMARK 465 ALA B 13 REMARK 465 GLY B 101 REMARK 465 ALA B 102 REMARK 465 HIS B 103 REMARK 465 ALA B 104 REMARK 465 GLY B 105 REMARK 465 GLU B 106 REMARK 465 GLY B 107 REMARK 465 LYS B 132 REMARK 465 GLU B 133 REMARK 465 VAL B 134 REMARK 465 THR B 135 REMARK 465 HIS B 136 REMARK 465 ILE B 137 REMARK 465 ASP B 138 REMARK 465 ASP B 139 REMARK 465 VAL B 388 REMARK 465 SER B 389 REMARK 465 GLY B 390 REMARK 465 GLY B 391 REMARK 465 GLY B 392 REMARK 465 LYS B 393 REMARK 465 LYS B 394 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 ARG A 15 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 21 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 34 CG OD1 ND2 REMARK 470 LYS A 46 CE NZ REMARK 470 LEU A 47 CG CD1 CD2 REMARK 470 GLN A 78 CG CD OE1 NE2 REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 VAL A 99 CG1 CG2 REMARK 470 ARG A 100 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 115 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 127 NH1 REMARK 470 ASP A 131 CG OD1 OD2 REMARK 470 ILE A 150 CD1 REMARK 470 GLU A 152 CD OE1 OE2 REMARK 470 GLU A 153 OE1 OE2 REMARK 470 ARG A 155 NH1 NH2 REMARK 470 LYS A 157 CD CE NZ REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 LYS A 174 NZ REMARK 470 ARG A 175 NH1 NH2 REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 LEU A 183 CD1 CD2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LYS A 199 CD CE NZ REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 GLU A 212 CG CD OE1 OE2 REMARK 470 ARG A 238 NH1 REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 GLU A 253 OE1 OE2 REMARK 470 ARG A 268 NH1 NH2 REMARK 470 ASP A 276 OD1 REMARK 470 GLU A 277 CG CD OE1 OE2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 ARG A 321 NH1 NH2 REMARK 470 LYS A 325 CE NZ REMARK 470 GLN A 328 OE1 NE2 REMARK 470 ARG A 339 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 353 CG CD CE NZ REMARK 470 GLU A 358 OE1 OE2 REMARK 470 LYS A 362 NZ REMARK 470 LYS A 366 CG CD CE NZ REMARK 470 TYR A 367 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 368 NH2 REMARK 470 LYS A 372 CE NZ REMARK 470 GLN A 377 OE1 NE2 REMARK 470 LYS A 385 CE NZ REMARK 470 GLU B 14 CD OE1 OE2 REMARK 470 ARG B 15 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 21 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL B 30 CG1 CG2 REMARK 470 LEU B 32 CD1 CD2 REMARK 470 ASN B 34 CG OD1 ND2 REMARK 470 GLN B 78 CD OE1 NE2 REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 VAL B 99 CG1 CG2 REMARK 470 ARG B 100 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 108 CG CD1 CD2 REMARK 470 ILE B 116 CG2 CD1 REMARK 470 ARG B 117 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 122 CG2 CD1 REMARK 470 LEU B 126 CD1 CD2 REMARK 470 ASP B 131 CG OD1 OD2 REMARK 470 ARG B 145 NH2 REMARK 470 ILE B 150 CG2 CD1 REMARK 470 GLU B 152 CD OE1 OE2 REMARK 470 GLU B 153 OE1 REMARK 470 LEU B 154 CD1 CD2 REMARK 470 LYS B 157 CD CE NZ REMARK 470 GLN B 163 CD OE1 NE2 REMARK 470 ILE B 166 CG1 CG2 CD1 REMARK 470 LYS B 171 CD CE NZ REMARK 470 LYS B 174 NZ REMARK 470 ARG B 175 NH1 REMARK 470 LYS B 179 CG CD CE NZ REMARK 470 LYS B 182 CG CD CE NZ REMARK 470 GLU B 189 OE1 OE2 REMARK 470 LYS B 190 CG CD CE NZ REMARK 470 VAL B 191 CG1 CG2 REMARK 470 LYS B 192 CG CD CE NZ REMARK 470 ASP B 197 CG OD1 OD2 REMARK 470 LYS B 199 CD CE NZ REMARK 470 LYS B 207 CG CD CE NZ REMARK 470 GLU B 212 OE1 OE2 REMARK 470 LEU B 219 CD1 CD2 REMARK 470 VAL B 229 CG1 REMARK 470 LYS B 240 NZ REMARK 470 LYS B 242 CD CE NZ REMARK 470 LYS B 246 CG CD CE NZ REMARK 470 GLU B 253 CD OE1 OE2 REMARK 470 ILE B 259 CG2 CD1 REMARK 470 ARG B 268 NE CZ NH1 NH2 REMARK 470 LYS B 280 CG CD CE NZ REMARK 470 GLN B 286 CD OE1 NE2 REMARK 470 ASP B 313 CG OD1 OD2 REMARK 470 ARG B 321 CZ NH1 NH2 REMARK 470 ARG B 322 CD NE CZ NH1 NH2 REMARK 470 LYS B 325 NZ REMARK 470 ARG B 339 NE CZ NH1 NH2 REMARK 470 LYS B 353 NZ REMARK 470 GLU B 358 CG CD OE1 OE2 REMARK 470 ARG B 368 CD NE CZ NH1 NH2 REMARK 470 LYS B 372 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 78 34.10 -78.78 REMARK 500 LEU A 79 -10.38 -149.85 REMARK 500 ALA A 128 39.00 -144.22 REMARK 500 GLN A 323 24.32 82.95 REMARK 500 TYR A 367 90.99 -59.55 REMARK 500 VAL B 99 -73.53 -123.37 REMARK 500 ALA B 128 29.38 -141.60 REMARK 500 PHE B 203 75.78 -109.94 REMARK 500 ILE B 342 -60.12 -105.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 625 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 626 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH A 627 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH B 625 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B 626 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B 627 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B 628 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B 629 DISTANCE = 8.47 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GNP A 401 O2G REMARK 620 2 GNP A 401 O2B 72.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EE0 RELATED DB: PDB REMARK 900 RELATED ID: 5EE1 RELATED DB: PDB REMARK 900 RELATED ID: 5EE3 RELATED DB: PDB DBREF 5EE9 A 1 394 UNP Q6Z1J6 OLA1_ORYSJ 1 394 DBREF 5EE9 B 1 394 UNP Q6Z1J6 OLA1_ORYSJ 1 394 SEQADV 5EE9 SER A 0 UNP Q6Z1J6 EXPRESSION TAG SEQADV 5EE9 SER B 0 UNP Q6Z1J6 EXPRESSION TAG SEQRES 1 A 395 SER MET PRO PRO LYS ALA SER LYS LYS ASP ALA ALA PRO SEQRES 2 A 395 ALA GLU ARG PRO ILE LEU GLY ARG PHE SER SER HIS LEU SEQRES 3 A 395 LYS ILE GLY ILE VAL GLY LEU PRO ASN VAL GLY LYS SER SEQRES 4 A 395 THR PHE PHE ASN ILE VAL THR LYS LEU SER ILE PRO ALA SEQRES 5 A 395 GLU ASN PHE PRO PHE CYS THR ILE ASP PRO ASN GLU ALA SEQRES 6 A 395 ARG VAL TYR VAL PRO ASP GLU ARG PHE ASP TRP LEU CYS SEQRES 7 A 395 GLN LEU TYR LYS PRO LYS SER GLU VAL SER ALA TYR LEU SEQRES 8 A 395 GLU ILE ASN ASP ILE ALA GLY LEU VAL ARG GLY ALA HIS SEQRES 9 A 395 ALA GLY GLU GLY LEU GLY ASN ALA PHE LEU SER HIS ILE SEQRES 10 A 395 ARG ALA VAL ASP GLY ILE PHE HIS VAL LEU ARG ALA PHE SEQRES 11 A 395 GLU ASP LYS GLU VAL THR HIS ILE ASP ASP SER VAL ASP SEQRES 12 A 395 PRO VAL ARG ASP LEU GLU THR ILE GLY GLU GLU LEU ARG SEQRES 13 A 395 LEU LYS ASP ILE GLU PHE VAL GLN ASN LYS ILE ASP ASP SEQRES 14 A 395 LEU GLU LYS SER MET LYS ARG SER ASN ASP LYS GLN LEU SEQRES 15 A 395 LYS LEU GLU HIS GLU LEU CYS GLU LYS VAL LYS ALA HIS SEQRES 16 A 395 LEU GLU ASP GLY LYS ASP VAL ARG PHE GLY ASP TRP LYS SEQRES 17 A 395 SER ALA ASP ILE GLU ILE LEU ASN THR PHE GLN LEU LEU SEQRES 18 A 395 THR ALA LYS PRO VAL VAL TYR LEU VAL ASN MET SER GLU SEQRES 19 A 395 LYS ASP TYR GLN ARG LYS LYS ASN LYS PHE LEU PRO LYS SEQRES 20 A 395 ILE HIS ALA TRP VAL GLN GLU HIS GLY GLY GLU THR ILE SEQRES 21 A 395 ILE PRO PHE SER CYS ALA PHE GLU ARG LEU LEU ALA ASP SEQRES 22 A 395 MET PRO PRO ASP GLU ALA ALA LYS TYR CYS ALA GLU ASN SEQRES 23 A 395 GLN ILE ALA SER VAL ILE PRO LYS ILE ILE LYS THR GLY SEQRES 24 A 395 PHE ALA ALA ILE HIS LEU ILE TYR PHE PHE THR ALA GLY SEQRES 25 A 395 PRO ASP GLU VAL LYS CYS TRP GLN ILE ARG ARG GLN THR SEQRES 26 A 395 LYS ALA PRO GLN ALA ALA GLY THR ILE HIS THR ASP PHE SEQRES 27 A 395 GLU ARG GLY PHE ILE CYS ALA GLU VAL MET LYS PHE ASP SEQRES 28 A 395 ASP LEU LYS GLU LEU GLY SER GLU SER ALA VAL LYS ALA SEQRES 29 A 395 ALA GLY LYS TYR ARG GLN GLU GLY LYS THR TYR VAL VAL SEQRES 30 A 395 GLN ASP GLY ASP ILE ILE PHE PHE LYS PHE ASN VAL SER SEQRES 31 A 395 GLY GLY GLY LYS LYS SEQRES 1 B 395 SER MET PRO PRO LYS ALA SER LYS LYS ASP ALA ALA PRO SEQRES 2 B 395 ALA GLU ARG PRO ILE LEU GLY ARG PHE SER SER HIS LEU SEQRES 3 B 395 LYS ILE GLY ILE VAL GLY LEU PRO ASN VAL GLY LYS SER SEQRES 4 B 395 THR PHE PHE ASN ILE VAL THR LYS LEU SER ILE PRO ALA SEQRES 5 B 395 GLU ASN PHE PRO PHE CYS THR ILE ASP PRO ASN GLU ALA SEQRES 6 B 395 ARG VAL TYR VAL PRO ASP GLU ARG PHE ASP TRP LEU CYS SEQRES 7 B 395 GLN LEU TYR LYS PRO LYS SER GLU VAL SER ALA TYR LEU SEQRES 8 B 395 GLU ILE ASN ASP ILE ALA GLY LEU VAL ARG GLY ALA HIS SEQRES 9 B 395 ALA GLY GLU GLY LEU GLY ASN ALA PHE LEU SER HIS ILE SEQRES 10 B 395 ARG ALA VAL ASP GLY ILE PHE HIS VAL LEU ARG ALA PHE SEQRES 11 B 395 GLU ASP LYS GLU VAL THR HIS ILE ASP ASP SER VAL ASP SEQRES 12 B 395 PRO VAL ARG ASP LEU GLU THR ILE GLY GLU GLU LEU ARG SEQRES 13 B 395 LEU LYS ASP ILE GLU PHE VAL GLN ASN LYS ILE ASP ASP SEQRES 14 B 395 LEU GLU LYS SER MET LYS ARG SER ASN ASP LYS GLN LEU SEQRES 15 B 395 LYS LEU GLU HIS GLU LEU CYS GLU LYS VAL LYS ALA HIS SEQRES 16 B 395 LEU GLU ASP GLY LYS ASP VAL ARG PHE GLY ASP TRP LYS SEQRES 17 B 395 SER ALA ASP ILE GLU ILE LEU ASN THR PHE GLN LEU LEU SEQRES 18 B 395 THR ALA LYS PRO VAL VAL TYR LEU VAL ASN MET SER GLU SEQRES 19 B 395 LYS ASP TYR GLN ARG LYS LYS ASN LYS PHE LEU PRO LYS SEQRES 20 B 395 ILE HIS ALA TRP VAL GLN GLU HIS GLY GLY GLU THR ILE SEQRES 21 B 395 ILE PRO PHE SER CYS ALA PHE GLU ARG LEU LEU ALA ASP SEQRES 22 B 395 MET PRO PRO ASP GLU ALA ALA LYS TYR CYS ALA GLU ASN SEQRES 23 B 395 GLN ILE ALA SER VAL ILE PRO LYS ILE ILE LYS THR GLY SEQRES 24 B 395 PHE ALA ALA ILE HIS LEU ILE TYR PHE PHE THR ALA GLY SEQRES 25 B 395 PRO ASP GLU VAL LYS CYS TRP GLN ILE ARG ARG GLN THR SEQRES 26 B 395 LYS ALA PRO GLN ALA ALA GLY THR ILE HIS THR ASP PHE SEQRES 27 B 395 GLU ARG GLY PHE ILE CYS ALA GLU VAL MET LYS PHE ASP SEQRES 28 B 395 ASP LEU LYS GLU LEU GLY SER GLU SER ALA VAL LYS ALA SEQRES 29 B 395 ALA GLY LYS TYR ARG GLN GLU GLY LYS THR TYR VAL VAL SEQRES 30 B 395 GLN ASP GLY ASP ILE ILE PHE PHE LYS PHE ASN VAL SER SEQRES 31 B 395 GLY GLY GLY LYS LYS HET GNP A 401 32 HET MG A 402 1 HET K B 401 1 HET GOL B 402 6 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GNP C10 H17 N6 O13 P3 FORMUL 4 MG MG 2+ FORMUL 5 K K 1+ FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *256(H2 O) HELIX 1 AA1 GLY A 36 LYS A 46 1 11 HELIX 2 AA2 PRO A 50 PHE A 54 5 5 HELIX 3 AA3 ASP A 70 LEU A 76 1 7 HELIX 4 AA4 PHE A 112 ARG A 117 1 6 HELIX 5 AA5 ASP A 142 LYS A 174 1 33 HELIX 6 AA6 ASP A 178 ASP A 197 1 20 HELIX 7 AA7 ASP A 200 GLY A 204 5 5 HELIX 8 AA8 LYS A 207 ASN A 215 1 9 HELIX 9 AA9 LEU A 219 LYS A 223 5 5 HELIX 10 AB1 SER A 232 ARG A 238 1 7 HELIX 11 AB2 PHE A 243 HIS A 254 1 12 HELIX 12 AB3 SER A 263 ASP A 272 1 10 HELIX 13 AB4 PRO A 274 GLN A 286 1 13 HELIX 14 AB5 VAL A 290 ILE A 302 1 13 HELIX 15 AB6 LYS A 325 THR A 332 1 8 HELIX 16 AB7 HIS A 334 GLY A 340 1 7 HELIX 17 AB8 LYS A 348 LEU A 355 1 8 HELIX 18 AB9 SER A 357 GLY A 365 1 9 HELIX 19 AC1 GLY B 36 LYS B 46 1 11 HELIX 20 AC2 PRO B 50 PHE B 54 5 5 HELIX 21 AC3 ASP B 70 LYS B 81 1 12 HELIX 22 AC4 ALA B 96 VAL B 99 5 4 HELIX 23 AC5 GLY B 109 ARG B 117 1 9 HELIX 24 AC6 ASP B 142 LYS B 174 1 33 HELIX 25 AC7 ASP B 178 ASP B 197 1 20 HELIX 26 AC8 LYS B 207 GLN B 218 1 12 HELIX 27 AC9 LEU B 219 LYS B 223 5 5 HELIX 28 AD1 SER B 232 LYS B 239 1 8 HELIX 29 AD2 PHE B 243 HIS B 254 1 12 HELIX 30 AD3 SER B 263 ASP B 272 1 10 HELIX 31 AD4 PRO B 274 ASN B 285 1 12 HELIX 32 AD5 VAL B 290 ILE B 302 1 13 HELIX 33 AD6 LYS B 325 THR B 332 1 8 HELIX 34 AD7 HIS B 334 GLY B 340 1 7 HELIX 35 AD8 LYS B 348 GLY B 356 1 9 HELIX 36 AD9 SER B 357 ALA B 364 1 8 SHEET 1 AA1 6 GLU A 63 TYR A 67 0 SHEET 2 AA1 6 TYR A 89 ASP A 94 -1 O ILE A 92 N ALA A 64 SHEET 3 AA1 6 LYS A 26 VAL A 30 1 N ILE A 27 O ASN A 93 SHEET 4 AA1 6 GLY A 121 ARG A 127 1 O PHE A 123 N GLY A 28 SHEET 5 AA1 6 VAL A 225 ASN A 230 1 O LEU A 228 N HIS A 124 SHEET 6 AA1 6 ILE A 259 PHE A 262 1 O ILE A 260 N TYR A 227 SHEET 1 AA2 3 SER A 84 VAL A 86 0 SHEET 2 AA2 3 GLU A 314 ARG A 321 1 O CYS A 317 N VAL A 86 SHEET 3 AA2 3 LEU A 304 ALA A 310 -1 N ILE A 305 O ILE A 320 SHEET 1 AA3 3 ARG A 368 GLU A 370 0 SHEET 2 AA3 3 PHE A 341 MET A 347 -1 N VAL A 346 O ARG A 368 SHEET 3 AA3 3 ILE A 381 PHE A 386 -1 O LYS A 385 N ILE A 342 SHEET 1 AA4 6 GLU B 63 TYR B 67 0 SHEET 2 AA4 6 TYR B 89 ASP B 94 -1 O ILE B 92 N ALA B 64 SHEET 3 AA4 6 LYS B 26 VAL B 30 1 N ILE B 27 O ASN B 93 SHEET 4 AA4 6 GLY B 121 ARG B 127 1 O PHE B 123 N GLY B 28 SHEET 5 AA4 6 VAL B 225 ASN B 230 1 O VAL B 226 N ILE B 122 SHEET 6 AA4 6 ILE B 259 PHE B 262 1 O ILE B 260 N TYR B 227 SHEET 1 AA5 3 SER B 84 VAL B 86 0 SHEET 2 AA5 3 GLU B 314 ARG B 321 1 O VAL B 315 N SER B 84 SHEET 3 AA5 3 LEU B 304 ALA B 310 -1 N PHE B 307 O TRP B 318 SHEET 1 AA6 3 ARG B 368 GLU B 370 0 SHEET 2 AA6 3 PHE B 341 MET B 347 -1 N ALA B 344 O GLU B 370 SHEET 3 AA6 3 ILE B 381 PHE B 386 -1 O PHE B 383 N GLU B 345 LINK O2G GNP A 401 MG MG A 402 1555 1555 2.06 LINK O2B GNP A 401 MG MG A 402 1555 1555 2.56 LINK OG1 THR B 258 K K B 401 1555 1555 3.43 SITE 1 AC1 14 PRO A 33 ASN A 34 VAL A 35 GLY A 36 SITE 2 AC1 14 LYS A 37 SER A 38 THR A 39 GLY A 97 SITE 3 AC1 14 PHE A 129 ASN A 230 CYS A 264 MG A 402 SITE 4 AC1 14 HOH A 504 HOH A 510 SITE 1 AC2 2 SER A 38 GNP A 401 SITE 1 AC3 1 THR B 258 SITE 1 AC4 6 ASN B 34 VAL B 35 GLY B 36 LYS B 37 SITE 2 AC4 6 SER B 38 THR B 39 CRYST1 70.451 112.064 115.736 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014194 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008640 0.00000