HEADER TRANSFERASE 22-OCT-15 5EEG TITLE CRYSTAL STRUCTURE OF CARMINOMYCIN-4-O-METHYLTRANSFERASE DNRK IN TITLE 2 COMPLEX WITH TETRAZOLE-SAH COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARMINOMYCIN 4-O-METHYLTRANSFERASE DNRK; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: COMT,ANTHRACYCLINE 4-O-METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.292; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES PEUCETIUS; SOURCE 3 ORGANISM_TAXID: 1950; SOURCE 4 GENE: DNRK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS UNNATURAL SUBSTRATE, STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, ENZYME DISCOVERY FOR NATURAL PRODUCT KEYWDS 3 BIOSYNTHESIS, NATPRO, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.WANG,S.SINGH,J.S.THORSON,G.N.PHILLIPS JR.,ENZYME DISCOVERY FOR AUTHOR 2 NATURAL PRODUCT BIOSYNTHESIS (NATPRO) REVDAT 6 27-SEP-23 5EEG 1 REMARK REVDAT 5 11-DEC-19 5EEG 1 REMARK REVDAT 4 20-SEP-17 5EEG 1 REMARK REVDAT 3 28-SEP-16 5EEG 1 JRNL REVDAT 2 13-JUL-16 5EEG 1 JRNL REVDAT 1 23-DEC-15 5EEG 0 JRNL AUTH T.D.HUBER,F.WANG,S.SINGH,B.R.JOHNSON,J.ZHANG,M.SUNKARA, JRNL AUTH 2 S.G.VAN LANEN,A.J.MORRIS,G.N.PHILLIPS,J.S.THORSON JRNL TITL FUNCTIONAL ADOMET ISOSTERES RESISTANT TO CLASSICAL ADOMET JRNL TITL 2 DEGRADATION PATHWAYS. JRNL REF ACS CHEM.BIOL. V. 11 2484 2016 JRNL REFN ESSN 1554-8937 JRNL PMID 27351335 JRNL DOI 10.1021/ACSCHEMBIO.6B00348 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 35347 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.690 REMARK 3 FREE R VALUE TEST SET COUNT : 2013 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8568 - 5.4237 1.00 2439 149 0.1924 0.2185 REMARK 3 2 5.4237 - 4.3091 0.98 2360 146 0.1719 0.2039 REMARK 3 3 4.3091 - 3.7656 0.99 2373 141 0.1668 0.1851 REMARK 3 4 3.7656 - 3.4218 1.00 2418 145 0.1758 0.2255 REMARK 3 5 3.4218 - 3.1769 1.00 2368 151 0.1876 0.2333 REMARK 3 6 3.1769 - 2.9897 1.00 2384 143 0.2024 0.2868 REMARK 3 7 2.9897 - 2.8401 1.00 2405 138 0.2108 0.2647 REMARK 3 8 2.8401 - 2.7166 1.00 2389 146 0.2217 0.3137 REMARK 3 9 2.7166 - 2.6121 1.00 2378 133 0.2236 0.3103 REMARK 3 10 2.6121 - 2.5220 1.00 2371 155 0.2224 0.2767 REMARK 3 11 2.5220 - 2.4432 1.00 2410 137 0.2189 0.2906 REMARK 3 12 2.4432 - 2.3734 1.00 2384 147 0.2077 0.2461 REMARK 3 13 2.3734 - 2.3109 1.00 2362 150 0.2302 0.3240 REMARK 3 14 2.3109 - 2.2545 0.96 2293 132 0.2221 0.2983 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5299 REMARK 3 ANGLE : 0.959 7216 REMARK 3 CHIRALITY : 0.063 837 REMARK 3 PLANARITY : 0.005 941 REMARK 3 DIHEDRAL : 20.167 1914 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 15 THROUGH 101) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6934 -11.4411 -19.5806 REMARK 3 T TENSOR REMARK 3 T11: 0.1294 T22: 0.1325 REMARK 3 T33: 0.2236 T12: -0.0075 REMARK 3 T13: 0.0182 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 3.1185 L22: 3.2035 REMARK 3 L33: 1.8695 L12: -0.6894 REMARK 3 L13: 0.4701 L23: -0.4232 REMARK 3 S TENSOR REMARK 3 S11: 0.0817 S12: 0.2754 S13: -0.4645 REMARK 3 S21: -0.2304 S22: -0.0559 S23: -0.2213 REMARK 3 S31: 0.1422 S32: 0.1758 S33: -0.0168 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 15 THROUGH 101) REMARK 3 ORIGIN FOR THE GROUP (A): -26.6318 7.3778 -19.4603 REMARK 3 T TENSOR REMARK 3 T11: 0.1290 T22: 0.1308 REMARK 3 T33: 0.1609 T12: 0.0040 REMARK 3 T13: -0.0430 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 2.8983 L22: 2.3684 REMARK 3 L33: 1.8155 L12: -0.4376 REMARK 3 L13: -0.4052 L23: 0.5819 REMARK 3 S TENSOR REMARK 3 S11: 0.1149 S12: 0.2741 S13: 0.1989 REMARK 3 S21: -0.2836 S22: -0.0861 S23: 0.2558 REMARK 3 S31: -0.1131 S32: -0.1401 S33: -0.0317 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 102 THROUGH 352) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3276 20.4987 -11.7712 REMARK 3 T TENSOR REMARK 3 T11: 0.0945 T22: 0.1636 REMARK 3 T33: 0.1204 T12: 0.0107 REMARK 3 T13: 0.0003 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.6311 L22: 1.8726 REMARK 3 L33: 0.5594 L12: 0.8072 REMARK 3 L13: -0.0119 L23: -0.0078 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: 0.1637 S13: 0.0458 REMARK 3 S21: -0.0933 S22: 0.0284 S23: -0.1072 REMARK 3 S31: -0.0733 S32: 0.0279 S33: -0.0265 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 102 THROUGH 352) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0615 -24.6337 -11.8442 REMARK 3 T TENSOR REMARK 3 T11: 0.1001 T22: 0.1222 REMARK 3 T33: 0.1143 T12: 0.0129 REMARK 3 T13: -0.0202 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.1803 L22: 1.9597 REMARK 3 L33: 0.7118 L12: 0.5556 REMARK 3 L13: -0.0708 L23: 0.0742 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.0794 S13: -0.0866 REMARK 3 S21: -0.1256 S22: 0.0312 S23: 0.0073 REMARK 3 S31: 0.0929 S32: -0.0065 S33: -0.0234 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EEG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214738. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35379 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : 0.12500 REMARK 200 FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.34600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 200 STARTING MODEL: 1TW2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MAGNESIUM FORMATE DIHYDRATE AND REMARK 280 15% (W/V) PEG 3,350, PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.09000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 465 PRO A 5 REMARK 465 THR A 6 REMARK 465 VAL A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 ARG A 10 REMARK 465 PRO A 11 REMARK 465 GLN A 12 REMARK 465 GLN A 13 REMARK 465 ILE A 14 REMARK 465 PRO A 336 REMARK 465 SER A 337 REMARK 465 PRO A 338 REMARK 465 THR A 339 REMARK 465 ILE A 340 REMARK 465 PRO A 341 REMARK 465 ALA A 353 REMARK 465 THR A 354 REMARK 465 GLY A 355 REMARK 465 ALA A 356 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 465 GLU B 4 REMARK 465 PRO B 5 REMARK 465 THR B 6 REMARK 465 VAL B 7 REMARK 465 ALA B 8 REMARK 465 ALA B 9 REMARK 465 ARG B 10 REMARK 465 PRO B 11 REMARK 465 GLN B 12 REMARK 465 GLN B 13 REMARK 465 ILE B 14 REMARK 465 PRO B 338 REMARK 465 THR B 339 REMARK 465 ILE B 340 REMARK 465 PRO B 341 REMARK 465 TYR B 342 REMARK 465 ALA B 353 REMARK 465 THR B 354 REMARK 465 GLY B 355 REMARK 465 ALA B 356 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 263 O HOH B 501 1.95 REMARK 500 O HOH A 595 O HOH A 596 1.98 REMARK 500 O HOH A 682 O HOH A 714 2.05 REMARK 500 O HOH B 681 O HOH B 713 2.06 REMARK 500 NH1 ARG B 199 O HOH B 502 2.09 REMARK 500 O HOH B 732 O HOH B 734 2.10 REMARK 500 O HOH B 590 O HOH B 737 2.11 REMARK 500 NH1 ARG A 315 O HOH A 501 2.11 REMARK 500 NH2 ARG B 128 O HOH B 503 2.11 REMARK 500 NH2 ARG A 128 O HOH A 502 2.11 REMARK 500 O HOH B 734 O HOH B 747 2.13 REMARK 500 OE2 GLU A 290 O HOH A 503 2.14 REMARK 500 O HOH B 616 O HOH B 727 2.16 REMARK 500 O HOH B 564 O HOH B 642 2.16 REMARK 500 OG SER A 292 NH1 ARG B 70 2.17 REMARK 500 O HOH A 602 O HOH A 697 2.17 REMARK 500 OD2 ASP B 232 O HOH B 504 2.18 REMARK 500 O HOH B 512 O HOH B 689 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 608 O HOH B 573 2454 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 199 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 48 81.70 -62.29 REMARK 500 ASP A 81 -74.58 -96.39 REMARK 500 ASP A 287 142.40 -171.43 REMARK 500 ALA A 311 144.08 -172.60 REMARK 500 ALA B 48 94.49 -69.36 REMARK 500 GLU B 284 -163.86 -171.50 REMARK 500 ASP B 286 34.86 -150.05 REMARK 500 ALA B 311 146.22 -175.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 731 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 732 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 733 DISTANCE = 7.95 ANGSTROMS REMARK 525 HOH A 734 DISTANCE = 8.59 ANGSTROMS REMARK 525 HOH A 735 DISTANCE = 8.74 ANGSTROMS REMARK 525 HOH B 754 DISTANCE = 8.31 ANGSTROMS REMARK 525 HOH B 755 DISTANCE = 8.83 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue S8M A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue S8M B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EEH RELATED DB: PDB DBREF 5EEG A 1 356 UNP Q06528 DNRK_STRPE 1 356 DBREF 5EEG B 1 356 UNP Q06528 DNRK_STRPE 1 356 SEQADV 5EEG MET A -19 UNP Q06528 INITIATING METHIONINE SEQADV 5EEG GLY A -18 UNP Q06528 EXPRESSION TAG SEQADV 5EEG SER A -17 UNP Q06528 EXPRESSION TAG SEQADV 5EEG SER A -16 UNP Q06528 EXPRESSION TAG SEQADV 5EEG HIS A -15 UNP Q06528 EXPRESSION TAG SEQADV 5EEG HIS A -14 UNP Q06528 EXPRESSION TAG SEQADV 5EEG HIS A -13 UNP Q06528 EXPRESSION TAG SEQADV 5EEG HIS A -12 UNP Q06528 EXPRESSION TAG SEQADV 5EEG HIS A -11 UNP Q06528 EXPRESSION TAG SEQADV 5EEG HIS A -10 UNP Q06528 EXPRESSION TAG SEQADV 5EEG SER A -9 UNP Q06528 EXPRESSION TAG SEQADV 5EEG SER A -8 UNP Q06528 EXPRESSION TAG SEQADV 5EEG GLY A -7 UNP Q06528 EXPRESSION TAG SEQADV 5EEG LEU A -6 UNP Q06528 EXPRESSION TAG SEQADV 5EEG VAL A -5 UNP Q06528 EXPRESSION TAG SEQADV 5EEG PRO A -4 UNP Q06528 EXPRESSION TAG SEQADV 5EEG ARG A -3 UNP Q06528 EXPRESSION TAG SEQADV 5EEG GLY A -2 UNP Q06528 EXPRESSION TAG SEQADV 5EEG SER A -1 UNP Q06528 EXPRESSION TAG SEQADV 5EEG HIS A 0 UNP Q06528 EXPRESSION TAG SEQADV 5EEG MET B -19 UNP Q06528 INITIATING METHIONINE SEQADV 5EEG GLY B -18 UNP Q06528 EXPRESSION TAG SEQADV 5EEG SER B -17 UNP Q06528 EXPRESSION TAG SEQADV 5EEG SER B -16 UNP Q06528 EXPRESSION TAG SEQADV 5EEG HIS B -15 UNP Q06528 EXPRESSION TAG SEQADV 5EEG HIS B -14 UNP Q06528 EXPRESSION TAG SEQADV 5EEG HIS B -13 UNP Q06528 EXPRESSION TAG SEQADV 5EEG HIS B -12 UNP Q06528 EXPRESSION TAG SEQADV 5EEG HIS B -11 UNP Q06528 EXPRESSION TAG SEQADV 5EEG HIS B -10 UNP Q06528 EXPRESSION TAG SEQADV 5EEG SER B -9 UNP Q06528 EXPRESSION TAG SEQADV 5EEG SER B -8 UNP Q06528 EXPRESSION TAG SEQADV 5EEG GLY B -7 UNP Q06528 EXPRESSION TAG SEQADV 5EEG LEU B -6 UNP Q06528 EXPRESSION TAG SEQADV 5EEG VAL B -5 UNP Q06528 EXPRESSION TAG SEQADV 5EEG PRO B -4 UNP Q06528 EXPRESSION TAG SEQADV 5EEG ARG B -3 UNP Q06528 EXPRESSION TAG SEQADV 5EEG GLY B -2 UNP Q06528 EXPRESSION TAG SEQADV 5EEG SER B -1 UNP Q06528 EXPRESSION TAG SEQADV 5EEG HIS B 0 UNP Q06528 EXPRESSION TAG SEQRES 1 A 376 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 376 LEU VAL PRO ARG GLY SER HIS MET THR ALA GLU PRO THR SEQRES 3 A 376 VAL ALA ALA ARG PRO GLN GLN ILE ASP ALA LEU ARG THR SEQRES 4 A 376 LEU ILE ARG LEU GLY SER LEU HIS THR PRO MET VAL VAL SEQRES 5 A 376 ARG THR ALA ALA THR LEU ARG LEU VAL ASP HIS ILE LEU SEQRES 6 A 376 ALA GLY ALA ARG THR VAL LYS ALA LEU ALA ALA ARG THR SEQRES 7 A 376 ASP THR ARG PRO GLU ALA LEU LEU ARG LEU ILE ARG HIS SEQRES 8 A 376 LEU VAL ALA ILE GLY LEU LEU GLU GLU ASP ALA PRO GLY SEQRES 9 A 376 GLU PHE VAL PRO THR GLU VAL GLY GLU LEU LEU ALA ASP SEQRES 10 A 376 ASP HIS PRO ALA ALA GLN ARG ALA TRP HIS ASP LEU THR SEQRES 11 A 376 GLN ALA VAL ALA ARG ALA ASP ILE SER PHE THR ARG LEU SEQRES 12 A 376 PRO ASP ALA ILE ARG THR GLY ARG PRO THR TYR GLU SER SEQRES 13 A 376 ILE TYR GLY LYS PRO PHE TYR GLU ASP LEU ALA GLY ARG SEQRES 14 A 376 PRO ASP LEU ARG ALA SER PHE ASP SER LEU LEU ALA CYS SEQRES 15 A 376 ASP GLN ASP VAL ALA PHE ASP ALA PRO ALA ALA ALA TYR SEQRES 16 A 376 ASP TRP THR ASN VAL ARG HIS VAL LEU ASP VAL GLY GLY SEQRES 17 A 376 GLY LYS GLY GLY PHE ALA ALA ALA ILE ALA ARG ARG ALA SEQRES 18 A 376 PRO HIS VAL SER ALA THR VAL LEU GLU MET ALA GLY THR SEQRES 19 A 376 VAL ASP THR ALA ARG SER TYR LEU LYS ASP GLU GLY LEU SEQRES 20 A 376 SER ASP ARG VAL ASP VAL VAL GLU GLY ASP PHE PHE GLU SEQRES 21 A 376 PRO LEU PRO ARG LYS ALA ASP ALA ILE ILE LEU SER PHE SEQRES 22 A 376 VAL LEU LEU ASN TRP PRO ASP HIS ASP ALA VAL ARG ILE SEQRES 23 A 376 LEU THR ARG CYS ALA GLU ALA LEU GLU PRO GLY GLY ARG SEQRES 24 A 376 ILE LEU ILE HIS GLU ARG ASP ASP LEU HIS GLU ASN SER SEQRES 25 A 376 PHE ASN GLU GLN PHE THR GLU LEU ASP LEU ARG MET LEU SEQRES 26 A 376 VAL PHE LEU GLY GLY ALA LEU ARG THR ARG GLU LYS TRP SEQRES 27 A 376 ASP GLY LEU ALA ALA SER ALA GLY LEU VAL VAL GLU GLU SEQRES 28 A 376 VAL ARG GLN LEU PRO SER PRO THR ILE PRO TYR ASP LEU SEQRES 29 A 376 SER LEU LEU VAL LEU ALA PRO ALA ALA THR GLY ALA SEQRES 1 B 376 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 376 LEU VAL PRO ARG GLY SER HIS MET THR ALA GLU PRO THR SEQRES 3 B 376 VAL ALA ALA ARG PRO GLN GLN ILE ASP ALA LEU ARG THR SEQRES 4 B 376 LEU ILE ARG LEU GLY SER LEU HIS THR PRO MET VAL VAL SEQRES 5 B 376 ARG THR ALA ALA THR LEU ARG LEU VAL ASP HIS ILE LEU SEQRES 6 B 376 ALA GLY ALA ARG THR VAL LYS ALA LEU ALA ALA ARG THR SEQRES 7 B 376 ASP THR ARG PRO GLU ALA LEU LEU ARG LEU ILE ARG HIS SEQRES 8 B 376 LEU VAL ALA ILE GLY LEU LEU GLU GLU ASP ALA PRO GLY SEQRES 9 B 376 GLU PHE VAL PRO THR GLU VAL GLY GLU LEU LEU ALA ASP SEQRES 10 B 376 ASP HIS PRO ALA ALA GLN ARG ALA TRP HIS ASP LEU THR SEQRES 11 B 376 GLN ALA VAL ALA ARG ALA ASP ILE SER PHE THR ARG LEU SEQRES 12 B 376 PRO ASP ALA ILE ARG THR GLY ARG PRO THR TYR GLU SER SEQRES 13 B 376 ILE TYR GLY LYS PRO PHE TYR GLU ASP LEU ALA GLY ARG SEQRES 14 B 376 PRO ASP LEU ARG ALA SER PHE ASP SER LEU LEU ALA CYS SEQRES 15 B 376 ASP GLN ASP VAL ALA PHE ASP ALA PRO ALA ALA ALA TYR SEQRES 16 B 376 ASP TRP THR ASN VAL ARG HIS VAL LEU ASP VAL GLY GLY SEQRES 17 B 376 GLY LYS GLY GLY PHE ALA ALA ALA ILE ALA ARG ARG ALA SEQRES 18 B 376 PRO HIS VAL SER ALA THR VAL LEU GLU MET ALA GLY THR SEQRES 19 B 376 VAL ASP THR ALA ARG SER TYR LEU LYS ASP GLU GLY LEU SEQRES 20 B 376 SER ASP ARG VAL ASP VAL VAL GLU GLY ASP PHE PHE GLU SEQRES 21 B 376 PRO LEU PRO ARG LYS ALA ASP ALA ILE ILE LEU SER PHE SEQRES 22 B 376 VAL LEU LEU ASN TRP PRO ASP HIS ASP ALA VAL ARG ILE SEQRES 23 B 376 LEU THR ARG CYS ALA GLU ALA LEU GLU PRO GLY GLY ARG SEQRES 24 B 376 ILE LEU ILE HIS GLU ARG ASP ASP LEU HIS GLU ASN SER SEQRES 25 B 376 PHE ASN GLU GLN PHE THR GLU LEU ASP LEU ARG MET LEU SEQRES 26 B 376 VAL PHE LEU GLY GLY ALA LEU ARG THR ARG GLU LYS TRP SEQRES 27 B 376 ASP GLY LEU ALA ALA SER ALA GLY LEU VAL VAL GLU GLU SEQRES 28 B 376 VAL ARG GLN LEU PRO SER PRO THR ILE PRO TYR ASP LEU SEQRES 29 B 376 SER LEU LEU VAL LEU ALA PRO ALA ALA THR GLY ALA HET S8M A 401 28 HET S8M B 401 28 HETNAM S8M (2~{R},3~{R},4~{S},5~{S})-2-(6-AMINOPURIN-9-YL)-5- HETNAM 2 S8M [[(3~{S})-3-AZANYL-3-(1~{H}-1,2,3,4-TETRAZOL-5-YL) HETNAM 3 S8M PROPYL]SULFANYLMETHYL]OXOLANE-3,4-DIOL FORMUL 3 S8M 2(C14 H20 N10 O3 S) FORMUL 5 HOH *490(H2 O) HELIX 1 AA1 ASP A 15 SER A 25 1 11 HELIX 2 AA2 LEU A 26 LEU A 38 1 13 HELIX 3 AA3 ARG A 39 ALA A 46 1 8 HELIX 4 AA4 THR A 50 ASP A 59 1 10 HELIX 5 AA5 ARG A 61 ILE A 75 1 15 HELIX 6 AA6 VAL A 91 ALA A 96 5 6 HELIX 7 AA7 ALA A 102 ASP A 108 1 7 HELIX 8 AA8 GLN A 111 ASP A 117 1 7 HELIX 9 AA9 ILE A 118 THR A 121 5 4 HELIX 10 AB1 ARG A 122 GLY A 130 1 9 HELIX 11 AB2 THR A 133 GLY A 139 1 7 HELIX 12 AB3 PRO A 141 ARG A 149 1 9 HELIX 13 AB4 ARG A 149 ALA A 161 1 13 HELIX 14 AB5 ASP A 163 PHE A 168 1 6 HELIX 15 AB6 PHE A 168 ALA A 174 1 7 HELIX 16 AB7 GLY A 191 ALA A 201 1 11 HELIX 17 AB8 GLY A 213 GLU A 225 1 13 HELIX 18 AB9 VAL A 254 TRP A 258 5 5 HELIX 19 AC1 PRO A 259 ALA A 273 1 15 HELIX 20 AC2 LEU A 288 SER A 292 5 5 HELIX 21 AC3 ASN A 294 GLY A 309 1 16 HELIX 22 AC4 THR A 314 ALA A 325 1 12 HELIX 23 AC5 ALA B 16 SER B 25 1 10 HELIX 24 AC6 LEU B 26 LEU B 38 1 13 HELIX 25 AC7 ARG B 39 ALA B 46 1 8 HELIX 26 AC8 THR B 50 ASP B 59 1 10 HELIX 27 AC9 ARG B 61 ILE B 75 1 15 HELIX 28 AD1 VAL B 91 ALA B 96 5 6 HELIX 29 AD2 ALA B 102 ASP B 108 1 7 HELIX 30 AD3 GLN B 111 ASP B 117 1 7 HELIX 31 AD4 ILE B 118 THR B 121 5 4 HELIX 32 AD5 ARG B 122 GLY B 130 1 9 HELIX 33 AD6 THR B 133 GLY B 139 1 7 HELIX 34 AD7 PRO B 141 GLY B 148 1 8 HELIX 35 AD8 ARG B 149 ALA B 161 1 13 HELIX 36 AD9 ASP B 163 PHE B 168 1 6 HELIX 37 AE1 PHE B 168 ALA B 174 1 7 HELIX 38 AE2 GLY B 191 ALA B 201 1 11 HELIX 39 AE3 GLY B 213 GLU B 225 1 13 HELIX 40 AE4 VAL B 254 TRP B 258 5 5 HELIX 41 AE5 PRO B 259 ALA B 273 1 15 HELIX 42 AE6 LEU B 288 SER B 292 5 5 HELIX 43 AE7 ASN B 294 GLY B 309 1 16 HELIX 44 AE8 THR B 314 ALA B 325 1 12 SHEET 1 AA1 2 LEU A 78 GLU A 80 0 SHEET 2 AA1 2 PHE A 86 PRO A 88 -1 O VAL A 87 N GLU A 79 SHEET 1 AA2 7 VAL A 231 GLU A 235 0 SHEET 2 AA2 7 SER A 205 GLU A 210 1 N VAL A 208 O VAL A 234 SHEET 3 AA2 7 HIS A 182 VAL A 186 1 N ASP A 185 O THR A 207 SHEET 4 AA2 7 ALA A 246 SER A 252 1 O ILE A 250 N LEU A 184 SHEET 5 AA2 7 LEU A 274 GLU A 284 1 O LEU A 281 N ILE A 249 SHEET 6 AA2 7 SER A 345 PRO A 351 -1 O LEU A 349 N ILE A 280 SHEET 7 AA2 7 LEU A 327 GLN A 334 -1 N GLU A 330 O VAL A 348 SHEET 1 AA3 2 LEU B 78 GLU B 80 0 SHEET 2 AA3 2 PHE B 86 PRO B 88 -1 O VAL B 87 N GLU B 79 SHEET 1 AA4 7 VAL B 231 GLU B 235 0 SHEET 2 AA4 7 SER B 205 GLU B 210 1 N VAL B 208 O VAL B 234 SHEET 3 AA4 7 HIS B 182 VAL B 186 1 N ASP B 185 O THR B 207 SHEET 4 AA4 7 ALA B 246 SER B 252 1 O ILE B 250 N LEU B 184 SHEET 5 AA4 7 LEU B 274 GLU B 284 1 O LEU B 281 N ILE B 249 SHEET 6 AA4 7 SER B 345 PRO B 351 -1 O LEU B 347 N ILE B 282 SHEET 7 AA4 7 LEU B 327 GLN B 334 -1 N GLU B 331 O VAL B 348 SITE 1 AC1 19 TYR A 143 ARG A 153 LEU A 160 PHE A 168 SITE 2 AC1 19 GLY A 187 GLY A 188 GLY A 189 GLU A 210 SITE 3 AC1 19 MET A 211 GLY A 236 ASP A 237 PHE A 238 SITE 4 AC1 19 SER A 252 PHE A 253 ASN A 257 HOH A 590 SITE 5 AC1 19 HOH A 612 HOH A 634 HOH A 656 SITE 1 AC2 22 TYR B 143 ARG B 153 LEU B 160 PHE B 168 SITE 2 AC2 22 GLY B 187 GLY B 188 GLU B 210 MET B 211 SITE 3 AC2 22 GLY B 236 ASP B 237 PHE B 238 SER B 252 SITE 4 AC2 22 PHE B 253 ASN B 257 TRP B 258 HOH B 542 SITE 5 AC2 22 HOH B 610 HOH B 617 HOH B 643 HOH B 650 SITE 6 AC2 22 HOH B 656 HOH B 683 CRYST1 60.562 104.180 62.986 90.00 105.20 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016512 0.000000 0.004485 0.00000 SCALE2 0.000000 0.009599 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016452 0.00000