HEADER TRANSPORT PROTEIN 26-OCT-15 5EG1 TITLE ANTIBACTERIAL PEPTIDE ABC TRANSPORTER MCJD WITH A RESOLVED LIPID COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROCIN-J25 EXPORT ATP-BINDING/PERMEASE PROTEIN MCJD; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MICROCIN-J25 IMMUNITY PROTEIN,MICROCIN-J25 SECRETION ATP- COMPND 5 BINDING PROTEIN MCJD; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: MCJD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C43; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PWALDOGFPD KEYWDS MEMBRANE PROTEIN, ABC TRANSPORTER, LIPID, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.G.CHOUDHURY,K.BEIS REVDAT 5 10-JAN-24 5EG1 1 LINK REVDAT 4 30-AUG-17 5EG1 1 REMARK REVDAT 3 16-NOV-16 5EG1 1 JRNL REVDAT 2 14-SEP-16 5EG1 1 JRNL REVDAT 1 31-AUG-16 5EG1 0 JRNL AUTH S.MEHMOOD,V.CORRADI,H.G.CHOUDHURY,R.HUSSAIN,P.BECKER, JRNL AUTH 2 D.AXFORD,S.ZIRAH,S.REBUFFAT,D.P.TIELEMAN,C.V.ROBINSON,K.BEIS JRNL TITL STRUCTURAL AND FUNCTIONAL BASIS FOR LIPID SYNERGY ON THE JRNL TITL 2 ACTIVITY OF THE ANTIBACTERIAL PEPTIDE ABC TRANSPORTER MCJD. JRNL REF J.BIOL.CHEM. V. 291 21656 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27555327 JRNL DOI 10.1074/JBC.M116.732107 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.G.CHOUDHURY,Z.TONG,I.MATHAVAN,Y.LI,S.IWATA,S.ZIRAH, REMARK 1 AUTH 2 S.REBUFFAT,H.W.VAN VEEN,K.BEIS REMARK 1 TITL STRUCTURE OF AN ANTIBACTERIAL PEPTIDE ATP-BINDING CASSETTE REMARK 1 TITL 2 TRANSPORTER IN A NOVEL OUTWARD OCCLUDED STATE. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 111 9145 2014 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ESSN 1091-6490 REMARK 1 PMID 24920594 REMARK 1 DOI 10.1073/PNAS.1320506111 REMARK 2 REMARK 2 RESOLUTION. 3.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 29028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1458 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.42 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.54 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.70 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2794 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3000 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2649 REMARK 3 BIN R VALUE (WORKING SET) : 0.2998 REMARK 3 BIN FREE R VALUE : 0.3042 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.19 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 145 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9095 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 115 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 126.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -62.36340 REMARK 3 B22 (A**2) : -17.70630 REMARK 3 B33 (A**2) : 80.06970 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 1.298 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.513 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.781 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.809 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 9378 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 12705 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 4452 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 216 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1360 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 9378 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1281 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 11154 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.42 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.62 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DUE TO LOW RESOLUTION OF THE DATA, THE REMARK 3 LIGAND HEAD GROUP COULD EITHER A GLYCEROL OR ETHANOLAMINE REMARK 3 MOIETY. WE ASSIGNED IT AS GLYCEROL SINCE IT WAS SUPPORTED BY OUR REMARK 3 BIOCHEMICAL DATA. BOTH HEAD GROUPS CAN BE REFINED WITHOUT THE REMARK 3 PRESENCE OF ANY NEGATIVE FO-FC DENSITY REMARK 4 REMARK 4 5EG1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214851. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29066 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.420 REMARK 200 RESOLUTION RANGE LOW (A) : 67.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.76000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4PL0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE PH 5.5, 45 MM REMARK 280 NACL, 28% PEG 400 AND 1% NONYL-GLUCOPYRANOSIDE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.49000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.59500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.56500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 116.59500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.49000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.56500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ARG A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 LYS A 6 REMARK 465 ASN A 7 REMARK 465 SER A 8 REMARK 465 GLU A 580 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ARG B 3 REMARK 465 GLU B 580 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 18 -161.81 -79.21 REMARK 500 ALA A 325 1.49 -152.45 REMARK 500 ALA A 329 -78.26 -69.77 REMARK 500 THR A 330 -73.97 -152.78 REMARK 500 SER A 331 87.10 59.27 REMARK 500 SER A 333 -169.21 64.89 REMARK 500 PRO A 335 -72.93 -64.10 REMARK 500 ASP A 356 -23.08 62.14 REMARK 500 ASN A 362 -72.13 -68.24 REMARK 500 SER A 363 57.53 -158.90 REMARK 500 ASN A 405 60.23 65.15 REMARK 500 ASP A 406 -36.98 79.74 REMARK 500 ASP A 433 -164.93 -170.20 REMARK 500 ASN A 465 15.77 56.35 REMARK 500 ASN A 479 6.03 -68.92 REMARK 500 GLU A 506 29.41 44.22 REMARK 500 ASN A 540 3.23 -63.81 REMARK 500 ASP B 18 -162.59 -78.30 REMARK 500 LEU B 57 73.81 -104.91 REMARK 500 ASN B 59 79.45 -104.95 REMARK 500 ILE B 147 -72.62 -105.93 REMARK 500 ARG B 323 22.67 -70.98 REMARK 500 HIS B 324 -5.14 -145.98 REMARK 500 GLU B 326 -73.11 -77.97 REMARK 500 ASN B 327 99.52 -52.52 REMARK 500 LYS B 328 115.10 -160.30 REMARK 500 ALA B 329 -76.31 -74.10 REMARK 500 THR B 330 -71.41 -149.14 REMARK 500 SER B 331 88.43 61.62 REMARK 500 SER B 333 160.13 62.97 REMARK 500 SER B 355 -129.58 -104.33 REMARK 500 ASP B 357 -35.21 77.56 REMARK 500 SER B 363 58.44 -158.67 REMARK 500 THR B 370 151.73 -47.95 REMARK 500 ASN B 405 61.31 65.17 REMARK 500 ASP B 406 -37.89 79.79 REMARK 500 ASP B 433 -163.94 -171.85 REMARK 500 ASN B 465 15.49 56.44 REMARK 500 ILE B 475 171.00 -59.39 REMARK 500 ALA B 576 46.45 -79.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 385 OG REMARK 620 2 GLN A 426 OE1 84.6 REMARK 620 3 ANP A 601 O3G 170.9 97.4 REMARK 620 4 ANP A 601 O2B 99.6 170.5 79.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 385 OG REMARK 620 2 GLN B 426 OE1 77.0 REMARK 620 3 ANP B 601 O3G 161.5 84.6 REMARK 620 4 ANP B 601 O2B 104.7 171.7 93.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6L B 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PL0 RELATED DB: PDB REMARK 900 4PL0 CONTAINS THE SAME PROTEIN IN THE ABSENCE OF LIPID DBREF 5EG1 A 1 580 UNP Q9X2W0 MCJD_ECOLX 1 580 DBREF 5EG1 B 1 580 UNP Q9X2W0 MCJD_ECOLX 1 580 SEQRES 1 A 580 MET GLU ARG LYS GLN LYS ASN SER LEU PHE ASN TYR ILE SEQRES 2 A 580 TYR SER LEU MET ASP VAL ARG GLY LYS PHE LEU PHE PHE SEQRES 3 A 580 SER MET LEU PHE ILE THR SER LEU SER SER ILE ILE ILE SEQRES 4 A 580 SER ILE SER PRO LEU ILE LEU ALA LYS ILE THR ASP LEU SEQRES 5 A 580 LEU SER GLY SER LEU SER ASN PHE SER TYR GLU TYR LEU SEQRES 6 A 580 VAL LEU LEU ALA CYS LEU TYR MET PHE CYS VAL ILE SER SEQRES 7 A 580 ASN LYS ALA SER VAL PHE LEU PHE MET ILE LEU GLN SER SEQRES 8 A 580 SER LEU ARG ILE ASN MET GLN LYS LYS MET SER LEU LYS SEQRES 9 A 580 TYR LEU ARG GLU LEU TYR ASN GLU ASN ILE THR ASN LEU SEQRES 10 A 580 SER LYS ASN ASN ALA GLY TYR THR THR GLN SER LEU ASN SEQRES 11 A 580 GLN ALA SER ASN ASP ILE TYR ILE LEU VAL ARG ASN VAL SEQRES 12 A 580 SER GLN ASN ILE LEU SER PRO VAL ILE GLN LEU ILE SER SEQRES 13 A 580 THR ILE VAL VAL VAL LEU SER THR LYS ASP TRP PHE SER SEQRES 14 A 580 ALA GLY VAL PHE PHE LEU TYR ILE LEU VAL PHE VAL ILE SEQRES 15 A 580 PHE ASN THR ARG LEU THR GLY SER LEU ALA SER LEU ARG SEQRES 16 A 580 LYS HIS SER MET ASP ILE THR LEU ASN SER TYR SER LEU SEQRES 17 A 580 LEU SER ASP THR VAL ASP ASN MET ILE ALA ALA LYS LYS SEQRES 18 A 580 ASN ASN ALA LEU ARG LEU ILE SER GLU ARG TYR GLU ASP SEQRES 19 A 580 ALA LEU THR GLN GLU ASN ASN ALA GLN LYS LYS TYR TRP SEQRES 20 A 580 LEU LEU SER SER LYS VAL LEU LEU LEU ASN SER LEU LEU SEQRES 21 A 580 ALA VAL ILE LEU PHE GLY SER VAL PHE ILE TYR ASN ILE SEQRES 22 A 580 LEU GLY VAL LEU ASN GLY VAL VAL SER ILE GLY HIS PHE SEQRES 23 A 580 ILE MET ILE THR SER TYR ILE ILE LEU LEU SER THR PRO SEQRES 24 A 580 VAL GLU ASN ILE GLY ALA LEU LEU SER GLU ILE ARG GLN SEQRES 25 A 580 SER MET SER SER LEU ALA GLY PHE ILE GLN ARG HIS ALA SEQRES 26 A 580 GLU ASN LYS ALA THR SER PRO SER ILE PRO PHE LEU ASN SEQRES 27 A 580 MET GLU ARG LYS LEU ASN LEU SER ILE ARG GLU LEU SER SEQRES 28 A 580 PHE SER TYR SER ASP ASP LYS LYS ILE LEU ASN SER VAL SEQRES 29 A 580 SER LEU ASP LEU PHE THR GLY LYS MET TYR SER LEU THR SEQRES 30 A 580 GLY PRO SER GLY SER GLY LYS SER THR LEU VAL LYS ILE SEQRES 31 A 580 ILE SER GLY TYR TYR LYS ASN TYR PHE GLY ASP ILE TYR SEQRES 32 A 580 LEU ASN ASP ILE SER LEU ARG ASN ILE SER ASP GLU ASP SEQRES 33 A 580 LEU ASN ASP ALA ILE TYR TYR LEU THR GLN ASP ASP TYR SEQRES 34 A 580 ILE PHE MET ASP THR LEU ARG PHE ASN LEU ARG LEU ALA SEQRES 35 A 580 ASN TYR ASP ALA SER GLU ASN GLU ILE PHE LYS VAL LEU SEQRES 36 A 580 LYS LEU ALA ASN LEU SER VAL VAL ASN ASN GLU PRO VAL SEQRES 37 A 580 SER LEU ASP THR HIS LEU ILE ASN ARG GLY ASN ASN TYR SEQRES 38 A 580 SER GLY GLY GLN LYS GLN ARG ILE SER LEU ALA ARG LEU SEQRES 39 A 580 PHE LEU ARG LYS PRO ALA ILE ILE ILE ILE ASP GLU ALA SEQRES 40 A 580 THR SER ALA LEU ASP TYR ILE ASN GLU SER GLU ILE LEU SEQRES 41 A 580 SER SER ILE ARG THR HIS PHE PRO ASP ALA LEU ILE ILE SEQRES 42 A 580 ASN ILE SER HIS ARG ILE ASN LEU LEU GLU CYS SER ASP SEQRES 43 A 580 CYS VAL TYR VAL LEU ASN GLU GLY ASN ILE VAL ALA SER SEQRES 44 A 580 GLY HIS PHE ARG ASP LEU MET VAL SER ASN GLU TYR ILE SEQRES 45 A 580 SER GLY LEU ALA SER VAL THR GLU SEQRES 1 B 580 MET GLU ARG LYS GLN LYS ASN SER LEU PHE ASN TYR ILE SEQRES 2 B 580 TYR SER LEU MET ASP VAL ARG GLY LYS PHE LEU PHE PHE SEQRES 3 B 580 SER MET LEU PHE ILE THR SER LEU SER SER ILE ILE ILE SEQRES 4 B 580 SER ILE SER PRO LEU ILE LEU ALA LYS ILE THR ASP LEU SEQRES 5 B 580 LEU SER GLY SER LEU SER ASN PHE SER TYR GLU TYR LEU SEQRES 6 B 580 VAL LEU LEU ALA CYS LEU TYR MET PHE CYS VAL ILE SER SEQRES 7 B 580 ASN LYS ALA SER VAL PHE LEU PHE MET ILE LEU GLN SER SEQRES 8 B 580 SER LEU ARG ILE ASN MET GLN LYS LYS MET SER LEU LYS SEQRES 9 B 580 TYR LEU ARG GLU LEU TYR ASN GLU ASN ILE THR ASN LEU SEQRES 10 B 580 SER LYS ASN ASN ALA GLY TYR THR THR GLN SER LEU ASN SEQRES 11 B 580 GLN ALA SER ASN ASP ILE TYR ILE LEU VAL ARG ASN VAL SEQRES 12 B 580 SER GLN ASN ILE LEU SER PRO VAL ILE GLN LEU ILE SER SEQRES 13 B 580 THR ILE VAL VAL VAL LEU SER THR LYS ASP TRP PHE SER SEQRES 14 B 580 ALA GLY VAL PHE PHE LEU TYR ILE LEU VAL PHE VAL ILE SEQRES 15 B 580 PHE ASN THR ARG LEU THR GLY SER LEU ALA SER LEU ARG SEQRES 16 B 580 LYS HIS SER MET ASP ILE THR LEU ASN SER TYR SER LEU SEQRES 17 B 580 LEU SER ASP THR VAL ASP ASN MET ILE ALA ALA LYS LYS SEQRES 18 B 580 ASN ASN ALA LEU ARG LEU ILE SER GLU ARG TYR GLU ASP SEQRES 19 B 580 ALA LEU THR GLN GLU ASN ASN ALA GLN LYS LYS TYR TRP SEQRES 20 B 580 LEU LEU SER SER LYS VAL LEU LEU LEU ASN SER LEU LEU SEQRES 21 B 580 ALA VAL ILE LEU PHE GLY SER VAL PHE ILE TYR ASN ILE SEQRES 22 B 580 LEU GLY VAL LEU ASN GLY VAL VAL SER ILE GLY HIS PHE SEQRES 23 B 580 ILE MET ILE THR SER TYR ILE ILE LEU LEU SER THR PRO SEQRES 24 B 580 VAL GLU ASN ILE GLY ALA LEU LEU SER GLU ILE ARG GLN SEQRES 25 B 580 SER MET SER SER LEU ALA GLY PHE ILE GLN ARG HIS ALA SEQRES 26 B 580 GLU ASN LYS ALA THR SER PRO SER ILE PRO PHE LEU ASN SEQRES 27 B 580 MET GLU ARG LYS LEU ASN LEU SER ILE ARG GLU LEU SER SEQRES 28 B 580 PHE SER TYR SER ASP ASP LYS LYS ILE LEU ASN SER VAL SEQRES 29 B 580 SER LEU ASP LEU PHE THR GLY LYS MET TYR SER LEU THR SEQRES 30 B 580 GLY PRO SER GLY SER GLY LYS SER THR LEU VAL LYS ILE SEQRES 31 B 580 ILE SER GLY TYR TYR LYS ASN TYR PHE GLY ASP ILE TYR SEQRES 32 B 580 LEU ASN ASP ILE SER LEU ARG ASN ILE SER ASP GLU ASP SEQRES 33 B 580 LEU ASN ASP ALA ILE TYR TYR LEU THR GLN ASP ASP TYR SEQRES 34 B 580 ILE PHE MET ASP THR LEU ARG PHE ASN LEU ARG LEU ALA SEQRES 35 B 580 ASN TYR ASP ALA SER GLU ASN GLU ILE PHE LYS VAL LEU SEQRES 36 B 580 LYS LEU ALA ASN LEU SER VAL VAL ASN ASN GLU PRO VAL SEQRES 37 B 580 SER LEU ASP THR HIS LEU ILE ASN ARG GLY ASN ASN TYR SEQRES 38 B 580 SER GLY GLY GLN LYS GLN ARG ILE SER LEU ALA ARG LEU SEQRES 39 B 580 PHE LEU ARG LYS PRO ALA ILE ILE ILE ILE ASP GLU ALA SEQRES 40 B 580 THR SER ALA LEU ASP TYR ILE ASN GLU SER GLU ILE LEU SEQRES 41 B 580 SER SER ILE ARG THR HIS PHE PRO ASP ALA LEU ILE ILE SEQRES 42 B 580 ASN ILE SER HIS ARG ILE ASN LEU LEU GLU CYS SER ASP SEQRES 43 B 580 CYS VAL TYR VAL LEU ASN GLU GLY ASN ILE VAL ALA SER SEQRES 44 B 580 GLY HIS PHE ARG ASP LEU MET VAL SER ASN GLU TYR ILE SEQRES 45 B 580 SER GLY LEU ALA SER VAL THR GLU HET ANP A 601 31 HET MG A 602 1 HET ANP B 601 31 HET MG B 602 1 HET P6L B 603 51 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM P6L (2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) HETNAM 2 P6L PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL HETNAM 3 P6L (8E)-OCTADEC-8-ENOATE FORMUL 3 ANP 2(C10 H17 N6 O12 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 P6L C40 H75 O10 P HELIX 1 AA1 LEU A 9 LEU A 16 1 8 HELIX 2 AA2 ASP A 18 SER A 40 1 23 HELIX 3 AA3 ILE A 41 SER A 54 1 14 HELIX 4 AA4 SER A 58 ASN A 111 1 54 HELIX 5 AA5 ASN A 113 SER A 118 1 6 HELIX 6 AA6 ASN A 121 ILE A 147 1 27 HELIX 7 AA7 ILE A 147 THR A 164 1 18 HELIX 8 AA8 ASP A 166 ASN A 215 1 50 HELIX 9 AA9 ASN A 215 ASN A 222 1 8 HELIX 10 AB1 ALA A 224 ASN A 278 1 55 HELIX 11 AB2 SER A 282 ARG A 323 1 42 HELIX 12 AB3 GLY A 383 SER A 392 1 10 HELIX 13 AB4 ARG A 410 ILE A 412 5 3 HELIX 14 AB5 SER A 413 ALA A 420 1 8 HELIX 15 AB6 THR A 434 LEU A 441 1 8 HELIX 16 AB7 SER A 447 ALA A 458 1 12 HELIX 17 AB8 ILE A 475 ASN A 479 5 5 HELIX 18 AB9 SER A 482 ARG A 497 1 16 HELIX 19 AC1 ASP A 512 PHE A 527 1 16 HELIX 20 AC2 ASP A 564 ASN A 569 1 6 HELIX 21 AC3 ASN A 569 SER A 577 1 9 HELIX 22 AC4 GLN B 5 LEU B 16 1 12 HELIX 23 AC5 ASP B 18 SER B 54 1 37 HELIX 24 AC6 SER B 61 ASN B 111 1 51 HELIX 25 AC7 ASN B 113 SER B 118 1 6 HELIX 26 AC8 ASN B 121 ILE B 147 1 27 HELIX 27 AC9 ILE B 147 THR B 164 1 18 HELIX 28 AD1 ASP B 166 ASN B 215 1 50 HELIX 29 AD2 ASN B 215 ASN B 222 1 8 HELIX 30 AD3 ALA B 224 ASN B 278 1 55 HELIX 31 AD4 SER B 282 LEU B 296 1 15 HELIX 32 AD5 LEU B 296 GLU B 326 1 31 HELIX 33 AD6 GLY B 383 SER B 392 1 10 HELIX 34 AD7 ARG B 410 ILE B 412 5 3 HELIX 35 AD8 SER B 413 ALA B 420 1 8 HELIX 36 AD9 THR B 434 LEU B 441 1 8 HELIX 37 AE1 SER B 447 ALA B 458 1 12 HELIX 38 AE2 ILE B 475 ASN B 479 5 5 HELIX 39 AE3 SER B 482 ARG B 497 1 16 HELIX 40 AE4 ASP B 512 PHE B 527 1 16 HELIX 41 AE5 ARG B 538 CYS B 544 1 7 HELIX 42 AE6 HIS B 561 MET B 566 1 6 HELIX 43 AE7 ASN B 569 ALA B 576 1 8 SHEET 1 AA1 4 LYS A 359 LEU A 368 0 SHEET 2 AA1 4 LEU A 345 SER A 353 -1 N LEU A 345 O LEU A 368 SHEET 3 AA1 4 PHE A 399 LEU A 404 -1 O ASP A 401 N ARG A 348 SHEET 4 AA1 4 ILE A 407 SER A 408 -1 O ILE A 407 N LEU A 404 SHEET 1 AA2 6 ILE A 421 LEU A 424 0 SHEET 2 AA2 6 ILE A 501 ASP A 505 1 O ILE A 503 N LEU A 424 SHEET 3 AA2 6 LEU A 531 ILE A 535 1 O LEU A 531 N ILE A 502 SHEET 4 AA2 6 MET A 373 THR A 377 1 N TYR A 374 O ILE A 532 SHEET 5 AA2 6 CYS A 547 ASN A 552 1 O LEU A 551 N THR A 377 SHEET 6 AA2 6 ASN A 555 ALA A 558 -1 O ASN A 555 N ASN A 552 SHEET 1 AA3 2 VAL A 462 VAL A 463 0 SHEET 2 AA3 2 GLU A 466 PRO A 467 -1 O GLU A 466 N VAL A 463 SHEET 1 AA4 4 LEU B 361 LEU B 368 0 SHEET 2 AA4 4 LEU B 345 PHE B 352 -1 N LEU B 345 O LEU B 368 SHEET 3 AA4 4 PHE B 399 LEU B 404 -1 O ASP B 401 N ARG B 348 SHEET 4 AA4 4 ILE B 407 SER B 408 -1 O ILE B 407 N LEU B 404 SHEET 1 AA5 6 ILE B 421 LEU B 424 0 SHEET 2 AA5 6 ILE B 501 ASP B 505 1 O ILE B 503 N LEU B 424 SHEET 3 AA5 6 LEU B 531 ILE B 535 1 O LEU B 531 N ILE B 502 SHEET 4 AA5 6 MET B 373 THR B 377 1 N TYR B 374 O ILE B 532 SHEET 5 AA5 6 CYS B 547 ASN B 552 1 O LEU B 551 N THR B 377 SHEET 6 AA5 6 ASN B 555 ALA B 558 -1 O ASN B 555 N ASN B 552 SHEET 1 AA6 2 VAL B 462 VAL B 463 0 SHEET 2 AA6 2 GLU B 466 PRO B 467 -1 O GLU B 466 N VAL B 463 LINK OG SER A 385 MG MG A 602 1555 1555 1.90 LINK OE1 GLN A 426 MG MG A 602 1555 1555 1.95 LINK O3G ANP A 601 MG MG A 602 1555 1555 2.04 LINK O2B ANP A 601 MG MG A 602 1555 1555 2.58 LINK OG SER B 385 MG MG B 602 1555 1555 1.90 LINK OE1 GLN B 426 MG MG B 602 1555 1555 2.23 LINK O3G ANP B 601 MG MG B 602 1555 1555 1.96 LINK O2B ANP B 601 MG MG B 602 1555 1555 2.08 SITE 1 AC1 24 TYR A 354 ILE A 360 PRO A 379 SER A 380 SITE 2 AC1 24 GLY A 381 SER A 382 GLY A 383 LYS A 384 SITE 3 AC1 24 SER A 385 THR A 386 GLN A 426 GLU A 506 SITE 4 AC1 24 HIS A 537 MG A 602 VAL B 463 ASN B 464 SITE 5 AC1 24 ASN B 479 ASN B 480 TYR B 481 SER B 482 SITE 6 AC1 24 GLY B 483 GLY B 484 GLN B 485 ALA B 510 SITE 1 AC2 3 SER A 385 GLN A 426 ANP A 601 SITE 1 AC3 22 VAL A 463 ASN A 464 ASN A 479 ASN A 480 SITE 2 AC3 22 SER A 482 GLY A 483 GLY A 484 GLN A 485 SITE 3 AC3 22 TYR B 354 ILE B 360 PRO B 379 SER B 380 SITE 4 AC3 22 GLY B 381 SER B 382 GLY B 383 LYS B 384 SITE 5 AC3 22 SER B 385 THR B 386 GLN B 426 GLU B 506 SITE 6 AC3 22 HIS B 537 MG B 602 SITE 1 AC4 3 SER B 385 GLN B 426 ANP B 601 SITE 1 AC5 2 ILE B 155 ARG B 186 CRYST1 82.980 109.130 233.190 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012051 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009163 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004288 0.00000