HEADER VIRAL PROTEIN 26-OCT-15 5EG8 TITLE THE CAP BINDING SITE OF INFLUENZA VIRUS PROTEIN PB2 AS A DRUG TARGET COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE BASIC PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 108-270; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS SOURCE 3 (A/SWINE/QUEBEC/1257777/2010(H3N2)); SOURCE 4 ORGANISM_TAXID: 1076704; SOURCE 5 STRAIN: A/SWINE/QUEBEC/1257777/2010(H3N2); SOURCE 6 GENE: PB2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PB2 CAP NATIVE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.LIU,X.ZHENG,C.SEVERIN,T.ROCHA DE MOURA,K.LI,M.LUO REVDAT 3 27-SEP-23 5EG8 1 REMARK REVDAT 2 18-APR-18 5EG8 1 JRNL REMARK REVDAT 1 10-FEB-16 5EG8 0 JRNL AUTH C.SEVERIN,T.ROCHA DE MOURA,Y.LIU,K.LI,X.ZHENG,M.LUO JRNL TITL THE CAP-BINDING SITE OF INFLUENZA VIRUS PROTEIN PB2 AS A JRNL TITL 2 DRUG TARGET. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 72 245 2016 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 26894672 JRNL DOI 10.1107/S2059798316000085 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 47547 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.124 REMARK 3 R VALUE (WORKING SET) : 0.122 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2546 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3384 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.0880 REMARK 3 BIN FREE R VALUE SET COUNT : 195 REMARK 3 BIN FREE R VALUE : 0.1720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2580 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 337 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : 0.64000 REMARK 3 B12 (A**2) : -0.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.150 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2794 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2769 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3749 ; 1.935 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6352 ; 1.303 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 6.780 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;30.969 ;22.879 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 555 ;15.805 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;17.993 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 415 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3181 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 679 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1380 ; 3.494 ; 2.036 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1370 ; 3.395 ; 2.023 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1729 ; 4.129 ; 3.054 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5563 ; 5.448 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 98 ;48.449 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5760 ;16.624 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 321 A 483 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8233 6.0986 11.0813 REMARK 3 T TENSOR REMARK 3 T11: 0.0028 T22: 0.0031 REMARK 3 T33: 0.0001 T12: 0.0001 REMARK 3 T13: -0.0002 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.0196 L22: 0.0051 REMARK 3 L33: 0.0103 L12: 0.0064 REMARK 3 L13: 0.0015 L23: 0.0031 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.0003 S13: -0.0005 REMARK 3 S21: -0.0010 S22: -0.0006 S23: 0.0002 REMARK 3 S31: -0.0011 S32: 0.0001 S33: -0.0001 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 321 B 483 REMARK 3 ORIGIN FOR THE GROUP (A): 38.7541 6.0850 21.6798 REMARK 3 T TENSOR REMARK 3 T11: 0.0028 T22: 0.0032 REMARK 3 T33: 0.0002 T12: -0.0000 REMARK 3 T13: -0.0001 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.0147 L22: 0.0022 REMARK 3 L33: 0.0094 L12: -0.0030 REMARK 3 L13: 0.0025 L23: -0.0029 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: 0.0000 S13: -0.0010 REMARK 3 S21: 0.0009 S22: -0.0003 S23: -0.0000 REMARK 3 S31: -0.0011 S32: 0.0001 S33: -0.0006 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5EG8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214859. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47547 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 15.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 57.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4CB4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.49533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 130.99067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 130.99067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.49533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 692 O HOH B 702 1.75 REMARK 500 O HOH A 640 O HOH A 705 1.97 REMARK 500 CE MET B 460 O HOH B 754 2.01 REMARK 500 OE1 GLU B 342 O HOH B 601 2.07 REMARK 500 O HOH A 643 O HOH A 681 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 657 O HOH B 649 6665 0.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 380 CZ ARG A 380 NH2 -0.095 REMARK 500 ARG B 380 CZ ARG B 380 NH2 -0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 369 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 375 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 375 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 380 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 380 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 423 NE - CZ - NH1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 423 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 423 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG A 436 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 436 NE - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 LEU B 345 CB - CG - CD1 ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG B 380 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 380 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 423 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG B 423 NE - CZ - NH2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 436 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG B 436 NE - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 377 -169.97 -116.18 REMARK 500 ALA A 377 -169.97 -114.13 REMARK 500 ASP A 441 112.81 -178.89 REMARK 500 VAL A 457 115.37 -12.41 REMARK 500 ALA B 377 -168.45 -114.56 REMARK 500 ALA B 377 -168.45 -113.96 REMARK 500 ASP B 441 115.07 -179.48 REMARK 500 MET B 458 -143.03 59.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 765 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 773 DISTANCE = 5.93 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN B 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EG7 RELATED DB: PDB REMARK 900 RELATED ID: 5EG9 RELATED DB: PDB DBREF 5EG8 A 321 483 UNP G3LZH2 G3LZH2_9INFA 108 270 DBREF 5EG8 B 321 483 UNP G3LZH2 G3LZH2_9INFA 108 270 SEQRES 1 A 163 SER SER PHE SER PHE GLY GLY PHE THR PHE LYS ARG THR SEQRES 2 A 163 SER GLY SER SER VAL LYS LYS GLU GLU GLU VAL LEU THR SEQRES 3 A 163 GLY ASN LEU GLN THR LEU LYS ILE ARG VAL HIS GLU GLY SEQRES 4 A 163 TYR GLU GLU PHE THR MET VAL GLY ARG ARG ALA THR ALA SEQRES 5 A 163 ILE LEU ARG LYS ALA THR ARG ARG LEU ILE GLN LEU ILE SEQRES 6 A 163 VAL SER GLY ARG ASP GLU GLN SER ILE ALA GLU ALA ILE SEQRES 7 A 163 ILE VAL ALA MET VAL PHE SER GLN GLU ASP CYS MET ILE SEQRES 8 A 163 LYS ALA VAL ARG GLY ASP LEU ASN PHE VAL ASN ARG ALA SEQRES 9 A 163 ASN GLN ARG LEU ASN PRO MET HIS GLN LEU LEU ARG HIS SEQRES 10 A 163 PHE GLN LYS ASP ALA LYS VAL LEU PHE GLN ASN TRP GLY SEQRES 11 A 163 ILE GLU SER ILE ASP ASN VAL MET GLY MET ILE GLY ILE SEQRES 12 A 163 LEU PRO ASP MET THR PRO SER THR GLU MET SER LEU ARG SEQRES 13 A 163 GLY ILE ARG VAL SER LYS MET SEQRES 1 B 163 SER SER PHE SER PHE GLY GLY PHE THR PHE LYS ARG THR SEQRES 2 B 163 SER GLY SER SER VAL LYS LYS GLU GLU GLU VAL LEU THR SEQRES 3 B 163 GLY ASN LEU GLN THR LEU LYS ILE ARG VAL HIS GLU GLY SEQRES 4 B 163 TYR GLU GLU PHE THR MET VAL GLY ARG ARG ALA THR ALA SEQRES 5 B 163 ILE LEU ARG LYS ALA THR ARG ARG LEU ILE GLN LEU ILE SEQRES 6 B 163 VAL SER GLY ARG ASP GLU GLN SER ILE ALA GLU ALA ILE SEQRES 7 B 163 ILE VAL ALA MET VAL PHE SER GLN GLU ASP CYS MET ILE SEQRES 8 B 163 LYS ALA VAL ARG GLY ASP LEU ASN PHE VAL ASN ARG ALA SEQRES 9 B 163 ASN GLN ARG LEU ASN PRO MET HIS GLN LEU LEU ARG HIS SEQRES 10 B 163 PHE GLN LYS ASP ALA LYS VAL LEU PHE GLN ASN TRP GLY SEQRES 11 B 163 ILE GLU SER ILE ASP ASN VAL MET GLY MET ILE GLY ILE SEQRES 12 B 163 LEU PRO ASP MET THR PRO SER THR GLU MET SER LEU ARG SEQRES 13 B 163 GLY ILE ARG VAL SER LYS MET HET SCN A 501 3 HET SCN A 502 3 HET SCN A 503 3 HET SCN A 504 3 HET SCN B 501 3 HET SCN B 502 3 HET SCN B 503 3 HET SCN B 504 3 HETNAM SCN THIOCYANATE ION FORMUL 3 SCN 8(C N S 1-) FORMUL 11 HOH *337(H2 O) HELIX 1 AA1 ASP A 390 SER A 405 1 16 HELIX 2 AA2 GLU A 407 LYS A 412 1 6 HELIX 3 AA3 ASN A 429 GLN A 439 1 11 HELIX 4 AA4 ALA A 442 GLY A 450 1 9 HELIX 5 AA5 ASP B 390 SER B 405 1 16 HELIX 6 AA6 GLU B 407 LYS B 412 1 6 HELIX 7 AA7 ASN B 429 ASP B 441 1 13 HELIX 8 AA8 ALA B 442 GLY B 450 1 9 SHEET 1 AA1 8 SER A 322 PHE A 325 0 SHEET 2 AA1 8 PHE A 328 GLY A 335 -1 O PHE A 330 N PHE A 323 SHEET 3 AA1 8 GLU A 361 VAL A 366 -1 O VAL A 366 N THR A 329 SHEET 4 AA1 8 ALA A 370 ALA A 377 -1 O LEU A 374 N PHE A 363 SHEET 5 AA1 8 ARG A 380 GLY A 388 -1 O GLN A 383 N ARG A 375 SHEET 6 AA1 8 ILE A 478 SER A 481 1 O ARG A 479 N VAL A 386 SHEET 7 AA1 8 MET A 460 ILE A 463 -1 N ILE A 461 O VAL A 480 SHEET 8 AA1 8 PRO A 469 SER A 470 -1 O SER A 470 N GLY A 462 SHEET 1 AA2 2 VAL A 338 LEU A 345 0 SHEET 2 AA2 2 THR A 351 GLU A 358 -1 O GLU A 358 N VAL A 338 SHEET 1 AA3 2 ILE A 451 SER A 453 0 SHEET 2 AA3 2 MET A 473 LEU A 475 -1 O SER A 474 N GLU A 452 SHEET 1 AA4 8 SER B 322 PHE B 325 0 SHEET 2 AA4 8 PHE B 328 GLY B 335 -1 O PHE B 330 N PHE B 323 SHEET 3 AA4 8 GLU B 361 VAL B 366 -1 O VAL B 366 N THR B 329 SHEET 4 AA4 8 ALA B 370 ALA B 377 -1 O LEU B 374 N PHE B 363 SHEET 5 AA4 8 ARG B 380 GLY B 388 -1 O SER B 387 N THR B 371 SHEET 6 AA4 8 ILE B 478 SER B 481 1 O SER B 481 N VAL B 386 SHEET 7 AA4 8 MET B 460 ILE B 463 -1 N ILE B 461 O VAL B 480 SHEET 8 AA4 8 PRO B 469 SER B 470 -1 O SER B 470 N GLY B 462 SHEET 1 AA5 2 VAL B 338 LEU B 345 0 SHEET 2 AA5 2 THR B 351 GLU B 358 -1 O GLU B 358 N VAL B 338 SHEET 1 AA6 2 ILE B 451 SER B 453 0 SHEET 2 AA6 2 MET B 473 LEU B 475 -1 O SER B 474 N GLU B 452 SITE 1 AC1 6 PHE A 323 SER A 324 THR A 329 PHE B 420 SITE 2 AC1 6 VAL B 421 ARG B 436 SITE 1 AC2 6 GLY A 359 ALA A 377 THR A 378 HOH A 621 SITE 2 AC2 6 HOH A 666 HOH B 653 SITE 1 AC3 7 ILE A 354 ARG A 355 GLN A 406 MET A 431 SITE 2 AC3 7 LEU A 434 ARG B 423 HOH B 602 SITE 1 AC4 8 SER A 324 PHE A 325 GLY A 326 GLY A 327 SITE 2 AC4 8 HIS A 432 HOH A 637 HIS B 432 ARG B 436 SITE 1 AC5 6 PHE A 420 VAL A 421 ARG A 436 PHE B 323 SITE 2 AC5 6 SER B 324 THR B 329 SITE 1 AC6 6 ILE B 354 ARG B 355 GLN B 406 MET B 431 SITE 2 AC6 6 LEU B 434 HOH B 673 SITE 1 AC7 4 GLY B 359 ALA B 377 THR B 378 HOH B 684 SITE 1 AC8 8 HIS A 432 ARG A 436 SER B 324 PHE B 325 SITE 2 AC8 8 GLY B 326 GLY B 327 HIS B 432 HOH B 611 CRYST1 54.611 54.611 196.486 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018311 0.010572 0.000000 0.00000 SCALE2 0.000000 0.021144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005089 0.00000