HEADER HYDROLASE 27-OCT-15 5EGL TITLE THE STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF ACYL-COA HYDROLASE TITLE 2 FROM STAPHYLOCOCCUS AUREUS IN COMPLEX WITH BUTYRYL COENZYME A, TITLE 3 COENZYME A, AND COENZYME A DISULFIDE CAVEAT 5EGL BCO A 201 HAS WRONG CHIRALITY AT ATOM C10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL COA HYDROLASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS (STRAIN MU50 / ATCC SOURCE 3 700699); SOURCE 4 ORGANISM_TAXID: 158878; SOURCE 5 STRAIN: MU50 / ATCC 700699; SOURCE 6 GENE: SAV1878; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG21 KEYWDS ACYL COA THIOESTERASE, STAPHYLOCOCCUS AUREUS, COENZYME A, HOTDOG KEYWDS 2 THIOESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.B.KHANDOKAR,P.S.SRIVASTAVA,J.K.FORWOOD REVDAT 2 27-SEP-23 5EGL 1 REMARK REVDAT 1 09-NOV-16 5EGL 0 JRNL AUTH Y.B.KHANDOKAR,P.S.SRIVASTAVA,J.K.FORWOOD JRNL TITL THE STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF ACYL-COA JRNL TITL 2 HYDROLASE FROM STAPHYLOCOCCUS AUREUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1894 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 57459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8425 - 5.7881 1.00 2830 162 0.2074 0.2435 REMARK 3 2 5.7881 - 4.5964 1.00 2704 137 0.1722 0.1840 REMARK 3 3 4.5964 - 4.0160 1.00 2646 144 0.1602 0.1863 REMARK 3 4 4.0160 - 3.6491 1.00 2631 134 0.1863 0.2332 REMARK 3 5 3.6491 - 3.3877 1.00 2617 133 0.2068 0.2333 REMARK 3 6 3.3877 - 3.1881 1.00 2601 151 0.2206 0.2605 REMARK 3 7 3.1881 - 3.0285 1.00 2595 137 0.2353 0.2778 REMARK 3 8 3.0285 - 2.8967 1.00 2581 137 0.2469 0.2792 REMARK 3 9 2.8967 - 2.7852 1.00 2571 153 0.2444 0.2629 REMARK 3 10 2.7852 - 2.6891 1.00 2610 120 0.2446 0.2637 REMARK 3 11 2.6891 - 2.6050 1.00 2583 139 0.2394 0.2752 REMARK 3 12 2.6050 - 2.5306 1.00 2564 137 0.2452 0.2897 REMARK 3 13 2.5306 - 2.4640 1.00 2564 134 0.2439 0.2927 REMARK 3 14 2.4640 - 2.4039 1.00 2559 146 0.2379 0.2900 REMARK 3 15 2.4039 - 2.3492 1.00 2542 150 0.2409 0.2794 REMARK 3 16 2.3492 - 2.2992 1.00 2536 151 0.2435 0.3015 REMARK 3 17 2.2992 - 2.2532 1.00 2539 157 0.2466 0.2849 REMARK 3 18 2.2532 - 2.2107 1.00 2573 126 0.2494 0.2577 REMARK 3 19 2.2107 - 2.1712 1.00 2554 138 0.2582 0.2781 REMARK 3 20 2.1712 - 2.1344 1.00 2547 142 0.2733 0.3499 REMARK 3 21 2.1344 - 2.1000 1.00 2573 111 0.2754 0.2951 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4181 REMARK 3 ANGLE : 1.112 5682 REMARK 3 CHIRALITY : 0.041 619 REMARK 3 PLANARITY : 0.005 706 REMARK 3 DIHEDRAL : 15.181 1524 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EGL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214879. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SILICON DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57467 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 39.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.02717 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4NCP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M SODIUM FORMATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.26133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.63067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.94600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.31533 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 136.57667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 109.26133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 54.63067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 27.31533 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 81.94600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 136.57667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 71.13000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -123.20077 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -27.31533 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 380 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 GLN A 4 REMARK 465 ASP A 5 REMARK 465 ARG A 6 REMARK 465 ALA A 171 REMARK 465 GLN A 172 REMARK 465 HIS A 173 REMARK 465 ILE A 174 REMARK 465 ARG A 175 REMARK 465 ASP A 176 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASN B 3 REMARK 465 GLN B 4 REMARK 465 ASP B 5 REMARK 465 VAL B 103 REMARK 465 PHE B 104 REMARK 465 ASN B 105 REMARK 465 ASN B 106 REMARK 465 ILE B 174 REMARK 465 ARG B 175 REMARK 465 ASP B 176 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 ASN C 3 REMARK 465 GLN C 4 REMARK 465 ASP C 5 REMARK 465 ARG C 6 REMARK 465 ALA C 171 REMARK 465 GLN C 172 REMARK 465 HIS C 173 REMARK 465 ILE C 174 REMARK 465 ARG C 175 REMARK 465 ASP C 176 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP C 64 HH21 ARG C 154 1.47 REMARK 500 HG1 THR C 117 O HOH C 303 1.54 REMARK 500 O VAL A 103 O HOH A 301 2.10 REMARK 500 OG SER B 14 O HOH B 301 2.14 REMARK 500 O HOH A 367 O HOH A 378 2.14 REMARK 500 O54 5NG C 201 O HOH C 301 2.16 REMARK 500 O HOH B 362 O HOH C 339 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 332 O HOH C 305 6554 2.15 REMARK 500 O HOH A 327 O HOH C 323 6554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 169 66.67 -67.10 REMARK 500 ALA C 169 66.28 -68.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5NG C 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NCP RELATED DB: PDB REMARK 900 RELATED ID: 5EGJ RELATED DB: PDB REMARK 900 RELATED ID: 5EGK RELATED DB: PDB DBREF1 5EGL A 1 176 UNP A0A0H3K033_STAAM DBREF2 5EGL A A0A0H3K033 1 176 DBREF1 5EGL B 1 176 UNP A0A0H3K033_STAAM DBREF2 5EGL B A0A0H3K033 1 176 DBREF1 5EGL C 1 176 UNP A0A0H3K033_STAAM DBREF2 5EGL C A0A0H3K033 1 176 SEQRES 1 A 176 MET THR ASN GLN ASP ARG PRO MET LYS SER MET SER GLU SEQRES 2 A 176 SER LYS CYS TYR LYS ASN ARG GLN VAL PHE PRO GLN ASP SEQRES 3 A 176 THR ASN HIS HIS HIS THR MET PHE GLY GLY THR LEU MET SEQRES 4 A 176 ALA ASN ILE ASP GLU ILE ALA ALA ILE THR ALA MET LYS SEQRES 5 A 176 HIS ALA GLY ALA GLN VAL VAL THR ALA SER THR ASP SER SEQRES 6 A 176 VAL ASP PHE LEU LYS PRO ILE LYS THR GLY ASP ILE LEU SEQRES 7 A 176 GLN TYR VAL ALA MET VAL SER TYR ALA GLY THR SER SER SEQRES 8 A 176 MET GLU VAL VAL VAL GLN ILE ARG ILE ASP ASP VAL PHE SEQRES 9 A 176 ASN ASN LYS HIS ASP LEU ALA ALA LEU SER TYR LEU THR SEQRES 10 A 176 PHE VAL ALA LEU ASP ASP GLU GLY LYS PRO LYS HIS VAL SEQRES 11 A 176 PRO GLY VAL TYR PRO GLU ASP ASP VAL GLU LYS TRP PHE SEQRES 12 A 176 TYR ASP THR ALA PRO GLN ARG VAL GLU ARG ARG LYS ALA SEQRES 13 A 176 ARG ARG ILE GLU SER LYS GLN THR ILE GLU TYR LEU ALA SEQRES 14 A 176 GLN ALA GLN HIS ILE ARG ASP SEQRES 1 B 176 MET THR ASN GLN ASP ARG PRO MET LYS SER MET SER GLU SEQRES 2 B 176 SER LYS CYS TYR LYS ASN ARG GLN VAL PHE PRO GLN ASP SEQRES 3 B 176 THR ASN HIS HIS HIS THR MET PHE GLY GLY THR LEU MET SEQRES 4 B 176 ALA ASN ILE ASP GLU ILE ALA ALA ILE THR ALA MET LYS SEQRES 5 B 176 HIS ALA GLY ALA GLN VAL VAL THR ALA SER THR ASP SER SEQRES 6 B 176 VAL ASP PHE LEU LYS PRO ILE LYS THR GLY ASP ILE LEU SEQRES 7 B 176 GLN TYR VAL ALA MET VAL SER TYR ALA GLY THR SER SER SEQRES 8 B 176 MET GLU VAL VAL VAL GLN ILE ARG ILE ASP ASP VAL PHE SEQRES 9 B 176 ASN ASN LYS HIS ASP LEU ALA ALA LEU SER TYR LEU THR SEQRES 10 B 176 PHE VAL ALA LEU ASP ASP GLU GLY LYS PRO LYS HIS VAL SEQRES 11 B 176 PRO GLY VAL TYR PRO GLU ASP ASP VAL GLU LYS TRP PHE SEQRES 12 B 176 TYR ASP THR ALA PRO GLN ARG VAL GLU ARG ARG LYS ALA SEQRES 13 B 176 ARG ARG ILE GLU SER LYS GLN THR ILE GLU TYR LEU ALA SEQRES 14 B 176 GLN ALA GLN HIS ILE ARG ASP SEQRES 1 C 176 MET THR ASN GLN ASP ARG PRO MET LYS SER MET SER GLU SEQRES 2 C 176 SER LYS CYS TYR LYS ASN ARG GLN VAL PHE PRO GLN ASP SEQRES 3 C 176 THR ASN HIS HIS HIS THR MET PHE GLY GLY THR LEU MET SEQRES 4 C 176 ALA ASN ILE ASP GLU ILE ALA ALA ILE THR ALA MET LYS SEQRES 5 C 176 HIS ALA GLY ALA GLN VAL VAL THR ALA SER THR ASP SER SEQRES 6 C 176 VAL ASP PHE LEU LYS PRO ILE LYS THR GLY ASP ILE LEU SEQRES 7 C 176 GLN TYR VAL ALA MET VAL SER TYR ALA GLY THR SER SER SEQRES 8 C 176 MET GLU VAL VAL VAL GLN ILE ARG ILE ASP ASP VAL PHE SEQRES 9 C 176 ASN ASN LYS HIS ASP LEU ALA ALA LEU SER TYR LEU THR SEQRES 10 C 176 PHE VAL ALA LEU ASP ASP GLU GLY LYS PRO LYS HIS VAL SEQRES 11 C 176 PRO GLY VAL TYR PRO GLU ASP ASP VAL GLU LYS TRP PHE SEQRES 12 C 176 TYR ASP THR ALA PRO GLN ARG VAL GLU ARG ARG LYS ALA SEQRES 13 C 176 ARG ARG ILE GLU SER LYS GLN THR ILE GLU TYR LEU ALA SEQRES 14 C 176 GLN ALA GLN HIS ILE ARG ASP HET BCO A 201 87 HET COA B 201 80 HET 5NG C 201 158 HETNAM BCO BUTYRYL COENZYME A HETNAM COA COENZYME A HETNAM 5NG [[(2~{S},3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-4- HETNAM 2 5NG OXIDANYL-3-PHOSPHONOOXY-OXOLAN-2-YL]METHOXY-OXIDANYL- HETNAM 3 5NG PHOSPHORYL] [(3~{R})-4-[[3-[2-[2-[3-[[(2~{R})-4- HETNAM 4 5NG [[[(2~{R},3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-4- HETNAM 5 5NG OXIDANYL-3-PHOSPHONOOXY-OXOLAN-2-YL]METHOXY-OXIDANYL- HETNAM 6 5NG PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXY-3,3-DIMETHYL-2- HETNAM 7 5NG OXIDANYL-BUTANOYL]AMINO]PROPANOYLAMINO]ETHYLDISULFANYL HETNAM 8 5NG ]ETHYLAMINO]-3-OXIDANYLIDENE-PROPYL]AMINO]-2,2- HETNAM 9 5NG DIMETHYL-3-OXIDANYL-4-OXIDANYLIDENE-BUTYL] HYDROGEN HETNAM 10 5NG PHOSPHATE HETSYN BCO S-{(3S,5S,9R)-1-[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9- HETSYN 2 BCO YL)-4-HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]-3, HETSYN 3 BCO 5,9-TRIHYDROXY-8,8-DIMETHYL-3,5-DIOXIDO-10,14-DIOXO-2, HETSYN 4 BCO 4,6-TRIOXA-11,15-DIAZA-3LAMBDA~5~,5LAMBDA~5~- HETSYN 5 BCO DIPHOSPHAHEPTADECAN-17-YL} BUTANETHIOATE (NON- HETSYN 6 BCO PREFERRED NAME) HETSYN 5NG COA-DISULFIDE FORMUL 4 BCO C25 H42 N7 O17 P3 S FORMUL 5 COA C21 H36 N7 O16 P3 S FORMUL 6 5NG C42 H70 N14 O32 P6 S2 FORMUL 7 HOH *220(H2 O) HELIX 1 AA1 SER A 12 LYS A 15 5 4 HELIX 2 AA2 PHE A 23 THR A 27 5 5 HELIX 3 AA3 PHE A 34 GLY A 55 1 22 HELIX 4 AA4 ASP A 137 ALA A 169 1 33 HELIX 5 AA5 PHE B 23 THR B 27 5 5 HELIX 6 AA6 PHE B 34 GLY B 55 1 22 HELIX 7 AA7 ASP B 137 HIS B 173 1 37 HELIX 8 AA8 SER C 12 LYS C 15 5 4 HELIX 9 AA9 PHE C 23 THR C 27 5 5 HELIX 10 AB1 PHE C 34 GLY C 55 1 22 HELIX 11 AB2 ASP C 137 ALA C 169 1 33 SHEET 1 AA1 2 MET A 8 SER A 10 0 SHEET 2 AA1 2 GLY A 132 TYR A 134 1 O GLY A 132 N LYS A 9 SHEET 1 AA210 CYS A 16 GLN A 21 0 SHEET 2 AA210 ILE A 77 ALA A 87 -1 O LEU A 78 N ARG A 20 SHEET 3 AA210 SER A 91 ASP A 102 -1 O ASP A 101 N ILE A 77 SHEET 4 AA210 LYS A 107 LEU A 121 -1 O ASP A 109 N ILE A 100 SHEET 5 AA210 GLN A 57 PHE A 68 -1 N ASP A 67 O LEU A 113 SHEET 6 AA210 GLN B 57 PHE B 68 -1 O VAL B 66 N THR A 63 SHEET 7 AA210 ASP B 109 LEU B 121 -1 O LEU B 113 N ASP B 67 SHEET 8 AA210 SER B 91 ILE B 100 -1 N ILE B 100 O ASP B 109 SHEET 9 AA210 ILE B 77 ALA B 87 -1 N GLN B 79 O ARG B 99 SHEET 10 AA210 CYS B 16 GLN B 21 -1 N ARG B 20 O LEU B 78 SHEET 1 AA3 2 MET B 8 SER B 10 0 SHEET 2 AA3 2 GLY B 132 TYR B 134 1 O GLY B 132 N LYS B 9 SHEET 1 AA4 2 MET C 8 SER C 10 0 SHEET 2 AA4 2 GLY C 132 TYR C 134 1 O GLY C 132 N LYS C 9 SHEET 1 AA5 5 CYS C 16 GLN C 21 0 SHEET 2 AA5 5 ILE C 77 ALA C 87 -1 O TYR C 80 N LYS C 18 SHEET 3 AA5 5 SER C 91 ASP C 102 -1 O VAL C 95 N MET C 83 SHEET 4 AA5 5 LYS C 107 ALA C 120 -1 O LYS C 107 N ASP C 102 SHEET 5 AA5 5 VAL C 58 THR C 63 -1 N SER C 62 O THR C 117 SITE 1 AC1 22 THR A 60 ALA A 61 SER A 62 THR A 89 SITE 2 AC1 22 SER A 90 SER A 91 THR A 117 VAL A 119 SITE 3 AC1 22 ARG A 154 ARG A 158 HOH A 311 HOH A 329 SITE 4 AC1 22 HOH A 349 HOH A 371 ASN B 28 THR B 32 SITE 5 AC1 22 MET B 33 GLY B 35 ASP B 67 PHE B 68 SITE 6 AC1 22 LEU B 69 PRO B 71 SITE 1 AC2 20 THR A 32 MET A 33 GLY A 35 ASP A 67 SITE 2 AC2 20 PHE A 68 LEU A 69 PRO A 71 HOH A 307 SITE 3 AC2 20 HOH A 350 THR B 60 SER B 62 THR B 89 SITE 4 AC2 20 SER B 90 SER B 91 VAL B 119 ARG B 154 SITE 5 AC2 20 ARG B 158 HIS B 173 HOH B 306 HOH B 348 SITE 1 AC3 43 PHE A 34 GLY A 36 THR A 37 ARG B 20 SITE 2 AC3 43 GLN B 21 PHE B 23 THR B 37 ALA B 40 SITE 3 AC3 43 ASN B 41 ASP B 43 GLU B 44 LYS C 18 SITE 4 AC3 43 ARG C 20 THR C 32 MET C 33 PHE C 34 SITE 5 AC3 43 GLY C 35 ASP C 43 GLU C 44 ALA C 47 SITE 6 AC3 43 VAL C 59 THR C 60 ALA C 61 SER C 62 SITE 7 AC3 43 ASP C 67 PHE C 68 LEU C 69 PRO C 71 SITE 8 AC3 43 GLY C 88 THR C 89 SER C 90 SER C 91 SITE 9 AC3 43 THR C 117 VAL C 119 LYS C 155 ARG C 158 SITE 10 AC3 43 HOH C 301 HOH C 309 HOH C 312 HOH C 314 SITE 11 AC3 43 HOH C 329 HOH C 331 HOH C 342 CRYST1 142.260 142.260 163.892 90.00 90.00 120.00 P 65 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007029 0.004058 0.000000 0.00000 SCALE2 0.000000 0.008117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006102 0.00000