HEADER TRANSFERASE 27-OCT-15 5EGR TITLE TRNA GUANINE TRANSGLYCOSYLASE (TGT) IN COMPLEX WITH AN IMMUCILLIN TITLE 2 DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE INSERTION ENZYME,TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS SUBSP. MOBILIS (STRAIN ATCC SOURCE 3 31821 / ZM4 / CP4); SOURCE 4 ORGANISM_TAXID: 264203; SOURCE 5 GENE: TGT, ZMO0363; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSITION STATE ANALOG, SHIGELLOSIS, IMMUCILLIN, MODELING, KEYWDS 2 TRANSFERASE, TRANSFERASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR F.R.EHRMANN,A.HEINE,G.KLEBE REVDAT 3 10-JAN-24 5EGR 1 REMARK REVDAT 2 19-AUG-20 5EGR 1 REMARK REVDAT 1 09-NOV-16 5EGR 0 JRNL AUTH F.R.EHRMANN,C.HOHN,A.HAERTSCH,N.TRAPP,A.HEINE,G.KLEBE, JRNL AUTH 2 F.DIEDERICH JRNL TITL SYNTHESIS OF AN IMMUCILLIN DERIVATIVE AS A CLASS OF JRNL TITL 2 TRNA-GUANINE TRANSGLYCOSYLASE INHIBITORS: EXPLORATION OF A JRNL TITL 3 TRANSITION STATE ANALOGOUS BINDING MODE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV-2006_1492: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 58635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8702 - 4.2728 0.97 2671 141 0.1663 0.1694 REMARK 3 2 4.2728 - 3.3919 0.98 2657 140 0.1536 0.1625 REMARK 3 3 3.3919 - 2.9632 0.99 2660 140 0.1650 0.1964 REMARK 3 4 2.9632 - 2.6923 0.99 2677 141 0.1659 0.1954 REMARK 3 5 2.6923 - 2.4994 0.99 2660 140 0.1713 0.1575 REMARK 3 6 2.4994 - 2.3520 0.99 2672 140 0.1685 0.1973 REMARK 3 7 2.3520 - 2.2343 0.99 2661 140 0.1659 0.2074 REMARK 3 8 2.2343 - 2.1370 0.99 2632 139 0.1718 0.1764 REMARK 3 9 2.1370 - 2.0547 0.99 2656 140 0.1663 0.1982 REMARK 3 10 2.0547 - 1.9838 0.99 2661 140 0.1705 0.2042 REMARK 3 11 1.9838 - 1.9218 0.99 2633 138 0.1760 0.1976 REMARK 3 12 1.9218 - 1.8669 0.99 2692 142 0.1863 0.2489 REMARK 3 13 1.8669 - 1.8177 1.00 2643 139 0.1876 0.2273 REMARK 3 14 1.8177 - 1.7734 1.00 2648 140 0.1943 0.2210 REMARK 3 15 1.7734 - 1.7331 1.00 2669 140 0.1951 0.2209 REMARK 3 16 1.7331 - 1.6962 0.99 2648 140 0.2170 0.2340 REMARK 3 17 1.6962 - 1.6622 0.99 2657 139 0.2261 0.2713 REMARK 3 18 1.6622 - 1.6309 0.99 2638 139 0.2333 0.2837 REMARK 3 19 1.6309 - 1.6017 1.00 2665 141 0.2530 0.2753 REMARK 3 20 1.6017 - 1.5746 0.99 2621 138 0.2657 0.2411 REMARK 3 21 1.5746 - 1.5500 0.97 2582 135 0.2833 0.2931 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2960 REMARK 3 ANGLE : 1.049 3996 REMARK 3 CHIRALITY : 0.050 422 REMARK 3 PLANARITY : 0.005 545 REMARK 3 DIHEDRAL : 12.635 1107 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 11:105) REMARK 3 ORIGIN FOR THE GROUP (A): 99.1930 3.9716 18.0751 REMARK 3 T TENSOR REMARK 3 T11: 0.2440 T22: 0.1838 REMARK 3 T33: 0.1429 T12: 0.0584 REMARK 3 T13: -0.0064 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 2.4107 L22: 0.9592 REMARK 3 L33: 1.1661 L12: -0.4814 REMARK 3 L13: 0.3052 L23: 0.0097 REMARK 3 S TENSOR REMARK 3 S11: -0.1722 S12: -0.3241 S13: 0.0480 REMARK 3 S21: 0.3078 S22: 0.1460 S23: -0.0321 REMARK 3 S31: -0.0666 S32: -0.0939 S33: 0.0079 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 106:135) REMARK 3 ORIGIN FOR THE GROUP (A): 99.3230 25.9732 29.0895 REMARK 3 T TENSOR REMARK 3 T11: 0.6257 T22: 0.4361 REMARK 3 T33: 0.6205 T12: 0.1296 REMARK 3 T13: -0.0617 T23: -0.1306 REMARK 3 L TENSOR REMARK 3 L11: 6.4602 L22: 8.4907 REMARK 3 L33: 4.5395 L12: -6.2379 REMARK 3 L13: -3.3365 L23: 4.2314 REMARK 3 S TENSOR REMARK 3 S11: 0.0953 S12: -0.0933 S13: 0.9374 REMARK 3 S21: -0.2578 S22: -0.2941 S23: -0.6631 REMARK 3 S31: -1.2360 S32: -0.4516 S33: 0.1988 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 136:159) REMARK 3 ORIGIN FOR THE GROUP (A): 97.6485 13.6334 29.2687 REMARK 3 T TENSOR REMARK 3 T11: 0.4276 T22: 0.3666 REMARK 3 T33: 0.2084 T12: 0.1135 REMARK 3 T13: -0.0031 T23: -0.0522 REMARK 3 L TENSOR REMARK 3 L11: 6.0984 L22: 5.8794 REMARK 3 L33: 8.1598 L12: 0.2783 REMARK 3 L13: 0.4523 L23: 4.9871 REMARK 3 S TENSOR REMARK 3 S11: 0.0320 S12: -0.5618 S13: 0.5970 REMARK 3 S21: 0.3575 S22: -0.0255 S23: -0.0214 REMARK 3 S31: -0.3030 S32: -0.1428 S33: -0.0997 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 160:289) REMARK 3 ORIGIN FOR THE GROUP (A): 111.7773 13.1414 25.2990 REMARK 3 T TENSOR REMARK 3 T11: 0.3419 T22: 0.3076 REMARK 3 T33: 0.3385 T12: 0.0394 REMARK 3 T13: -0.0840 T23: -0.0997 REMARK 3 L TENSOR REMARK 3 L11: 2.2205 L22: 1.7952 REMARK 3 L33: 2.6668 L12: -0.1175 REMARK 3 L13: -0.7182 L23: 0.3821 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: -0.5323 S13: 0.4039 REMARK 3 S21: 0.4111 S22: 0.1453 S23: -0.2757 REMARK 3 S31: -0.1918 S32: 0.1664 S33: -0.1264 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 290:382) REMARK 3 ORIGIN FOR THE GROUP (A): 108.3106 7.2328 -2.4937 REMARK 3 T TENSOR REMARK 3 T11: 0.1711 T22: 0.2143 REMARK 3 T33: 0.2206 T12: -0.0212 REMARK 3 T13: 0.0273 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.8387 L22: 1.3218 REMARK 3 L33: 2.3551 L12: -0.7197 REMARK 3 L13: 1.6214 L23: -0.9735 REMARK 3 S TENSOR REMARK 3 S11: -0.0914 S12: 0.2171 S13: 0.1091 REMARK 3 S21: -0.0646 S22: -0.0008 S23: -0.2277 REMARK 3 S31: 0.0134 S32: 0.2944 S33: 0.1082 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EGR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58639 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 42.854 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 2.849 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03200 REMARK 200 FOR THE DATA SET : 15.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.83 REMARK 200 R MERGE FOR SHELL (I) : 0.44200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1PUD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 8000,100MM MES, 1MM DTT, 10% REMARK 280 DMSO,, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.22900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.24250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.22900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.24250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 180.91600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 525 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 714 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 THR A 9 REMARK 465 ASP A 10 REMARK 465 SER A 112 REMARK 465 SER A 113 REMARK 465 LEU A 114 REMARK 465 LYS A 125 REMARK 465 SER A 126 REMARK 465 HIS A 127 REMARK 465 LEU A 128 REMARK 465 ASP A 129 REMARK 465 GLY A 130 REMARK 465 SER A 131 REMARK 465 ARG A 132 REMARK 465 ARG A 384 REMARK 465 ASN A 385 REMARK 465 SER A 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 72 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS A 73 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 76 CG CD1 CD2 REMARK 470 ARG A 77 CD NE CZ NH1 NH2 REMARK 470 GLN A 107 CG CD OE1 NE2 REMARK 470 SER A 110 OG REMARK 470 LEU A 111 CG CD1 CD2 REMARK 470 THR A 115 OG1 CG2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLU A 120 CD OE1 OE2 REMARK 470 HIS A 133 ND1 CD2 CE1 NE2 REMARK 470 SER A 166 OG REMARK 470 ARG A 167 CD NE CZ NH1 NH2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 GLN A 213 CG CD OE1 NE2 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 ARG A 242 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 264 CD CE NZ REMARK 470 ARG A 286 CZ NH1 NH2 REMARK 470 ARG A 306 NH1 NH2 REMARK 470 GLN A 375 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 14 109.52 -163.26 REMARK 500 GLN A 203 -162.44 -127.03 REMARK 500 SER A 205 -130.46 53.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 320 SG 105.3 REMARK 620 3 CYS A 323 SG 113.8 115.4 REMARK 620 4 HIS A 349 ND1 105.0 116.1 100.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5NT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KWO RELATED DB: PDB REMARK 900 RELATED ID: 4LBU RELATED DB: PDB REMARK 900 RELATED ID: 4LEQ RELATED DB: PDB REMARK 900 RELATED ID: 1PUD RELATED DB: PDB REMARK 900 RELATED ID: 1P0D RELATED DB: PDB DBREF 5EGR A 1 386 UNP P28720 TGT_ZYMMO 1 386 SEQADV 5EGR LYS A 312 UNP P28720 THR 312 CONFLICT SEQRES 1 A 386 MET VAL GLU ALA THR ALA GLN GLU THR ASP ARG PRO ARG SEQRES 2 A 386 PHE SER PHE SER ILE ALA ALA ARG GLU GLY LYS ALA ARG SEQRES 3 A 386 THR GLY THR ILE GLU MET LYS ARG GLY VAL ILE ARG THR SEQRES 4 A 386 PRO ALA PHE MET PRO VAL GLY THR ALA ALA THR VAL LYS SEQRES 5 A 386 ALA LEU LYS PRO GLU THR VAL ARG ALA THR GLY ALA ASP SEQRES 6 A 386 ILE ILE LEU GLY ASN THR TYR HIS LEU MET LEU ARG PRO SEQRES 7 A 386 GLY ALA GLU ARG ILE ALA LYS LEU GLY GLY LEU HIS SER SEQRES 8 A 386 PHE MET GLY TRP ASP ARG PRO ILE LEU THR ASP SER GLY SEQRES 9 A 386 GLY TYR GLN VAL MET SER LEU SER SER LEU THR LYS GLN SEQRES 10 A 386 SER GLU GLU GLY VAL THR PHE LYS SER HIS LEU ASP GLY SEQRES 11 A 386 SER ARG HIS MET LEU SER PRO GLU ARG SER ILE GLU ILE SEQRES 12 A 386 GLN HIS LEU LEU GLY SER ASP ILE VAL MET ALA PHE ASP SEQRES 13 A 386 GLU CYS THR PRO TYR PRO ALA THR PRO SER ARG ALA ALA SEQRES 14 A 386 SER SER MET GLU ARG SER MET ARG TRP ALA LYS ARG SER SEQRES 15 A 386 ARG ASP ALA PHE ASP SER ARG LYS GLU GLN ALA GLU ASN SEQRES 16 A 386 ALA ALA LEU PHE GLY ILE GLN GLN GLY SER VAL PHE GLU SEQRES 17 A 386 ASN LEU ARG GLN GLN SER ALA ASP ALA LEU ALA GLU ILE SEQRES 18 A 386 GLY PHE ASP GLY TYR ALA VAL GLY GLY LEU ALA VAL GLY SEQRES 19 A 386 GLU GLY GLN ASP GLU MET PHE ARG VAL LEU ASP PHE SER SEQRES 20 A 386 VAL PRO MET LEU PRO ASP ASP LYS PRO HIS TYR LEU MET SEQRES 21 A 386 GLY VAL GLY LYS PRO ASP ASP ILE VAL GLY ALA VAL GLU SEQRES 22 A 386 ARG GLY ILE ASP MET PHE ASP CYS VAL LEU PRO THR ARG SEQRES 23 A 386 SER GLY ARG ASN GLY GLN ALA PHE THR TRP ASP GLY PRO SEQRES 24 A 386 ILE ASN ILE ARG ASN ALA ARG PHE SER GLU ASP LEU LYS SEQRES 25 A 386 PRO LEU ASP SER GLU CYS HIS CYS ALA VAL CYS GLN LYS SEQRES 26 A 386 TRP SER ARG ALA TYR ILE HIS HIS LEU ILE ARG ALA GLY SEQRES 27 A 386 GLU ILE LEU GLY ALA MET LEU MET THR GLU HIS ASN ILE SEQRES 28 A 386 ALA PHE TYR GLN GLN LEU MET GLN LYS ILE ARG ASP SER SEQRES 29 A 386 ILE SER GLU GLY ARG PHE SER GLN PHE ALA GLN ASP PHE SEQRES 30 A 386 ARG ALA ARG TYR PHE ALA ARG ASN SER HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET ZN A 405 1 HET 5NT A 406 19 HET EDO A 407 4 HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETNAM 5NT 2-AZANYL-7-[(2~{S},3~{R},5~{S})-5-(HYDROXYMETHYL)-3- HETNAM 2 5NT OXIDANYL-PYRROLIDIN-2-YL]-3,5-DIHYDROPYRROLO[3,2- HETNAM 3 5NT D]PYRIMIDIN-4-ONE HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GOL 4(C3 H8 O3) FORMUL 6 ZN ZN 2+ FORMUL 7 5NT C11 H15 N5 O3 FORMUL 8 EDO C2 H6 O2 FORMUL 9 HOH *218(H2 O) HELIX 1 AA1 LYS A 55 THR A 62 1 8 HELIX 2 AA2 ASN A 70 ARG A 77 1 8 HELIX 3 AA3 GLY A 79 LEU A 86 1 8 HELIX 4 AA4 GLY A 88 GLY A 94 1 7 HELIX 5 AA5 GLY A 104 LEU A 111 1 8 HELIX 6 AA6 SER A 136 GLY A 148 1 13 HELIX 7 AA7 THR A 164 SER A 188 1 25 HELIX 8 AA8 ARG A 189 ALA A 196 1 8 HELIX 9 AA9 PHE A 207 GLY A 222 1 16 HELIX 10 AB1 GLY A 236 VAL A 248 1 13 HELIX 11 AB2 PRO A 249 LEU A 251 5 3 HELIX 12 AB3 LYS A 264 GLU A 273 1 10 HELIX 13 AB4 VAL A 282 ASN A 290 1 9 HELIX 14 AB5 ASN A 304 SER A 308 5 5 HELIX 15 AB6 CYS A 320 TRP A 326 1 7 HELIX 16 AB7 SER A 327 ALA A 337 1 11 HELIX 17 AB8 GLU A 339 GLU A 367 1 29 HELIX 18 AB9 ARG A 369 PHE A 382 1 14 SHEET 1 AA1 3 PHE A 14 GLU A 22 0 SHEET 2 AA1 3 ALA A 25 MET A 32 -1 O THR A 29 N SER A 17 SHEET 3 AA1 3 GLY A 35 THR A 39 -1 O ILE A 37 N ILE A 30 SHEET 1 AA2 9 ALA A 41 MET A 43 0 SHEET 2 AA2 9 MET A 278 ASP A 280 1 O PHE A 279 N MET A 43 SHEET 3 AA2 9 HIS A 257 LEU A 259 1 N LEU A 259 O MET A 278 SHEET 4 AA2 9 GLY A 225 VAL A 228 1 N VAL A 228 O TYR A 258 SHEET 5 AA2 9 ALA A 197 GLN A 202 1 N GLN A 202 O ALA A 227 SHEET 6 AA2 9 ILE A 151 MET A 153 1 N VAL A 152 O ALA A 197 SHEET 7 AA2 9 ILE A 99 THR A 101 1 N THR A 101 O ILE A 151 SHEET 8 AA2 9 ILE A 67 GLY A 69 1 N GLY A 69 O LEU A 100 SHEET 9 AA2 9 VAL A 45 GLY A 46 1 N GLY A 46 O LEU A 68 SHEET 1 AA3 2 LYS A 116 GLN A 117 0 SHEET 2 AA3 2 VAL A 122 THR A 123 -1 O THR A 123 N LYS A 116 SHEET 1 AA4 2 GLN A 292 ALA A 293 0 SHEET 2 AA4 2 ILE A 300 ASN A 301 -1 O ILE A 300 N ALA A 293 LINK SG CYS A 318 ZN ZN A 405 1555 1555 2.34 LINK SG CYS A 320 ZN ZN A 405 1555 1555 2.36 LINK SG CYS A 323 ZN ZN A 405 1555 1555 2.23 LINK ND1 HIS A 349 ZN ZN A 405 1555 1555 2.09 CISPEP 1 THR A 39 PRO A 40 0 0.62 CISPEP 2 ARG A 77 PRO A 78 0 4.52 CISPEP 3 TYR A 161 PRO A 162 0 0.20 CISPEP 4 VAL A 262 GLY A 263 0 -2.80 SITE 1 AC1 9 PRO A 56 GLU A 57 GLY A 94 TRP A 95 SITE 2 AC1 9 ASP A 96 ARG A 97 LYS A 325 HOH A 603 SITE 3 AC1 9 HOH A 629 SITE 1 AC2 6 GLU A 317 LYS A 360 PHE A 373 ARG A 380 SITE 2 AC2 6 HOH A 544 HOH A 569 SITE 1 AC3 6 LEU A 311 CYS A 323 LYS A 325 TRP A 326 SITE 2 AC3 6 SER A 327 HOH A 616 SITE 1 AC4 6 ALA A 61 CYS A 320 ALA A 321 GLU A 348 SITE 2 AC4 6 HOH A 528 HOH A 559 SITE 1 AC5 4 CYS A 318 CYS A 320 CYS A 323 HIS A 349 SITE 1 AC6 14 ASN A 70 ASP A 102 SER A 103 TYR A 106 SITE 2 AC6 14 ASP A 156 ILE A 201 GLN A 203 GLY A 229 SITE 3 AC6 14 GLY A 230 MET A 260 GLY A 261 ASP A 280 SITE 4 AC6 14 HOH A 530 HOH A 552 SITE 1 AC7 5 PRO A 249 MET A 250 LEU A 251 PRO A 252 SITE 2 AC7 5 ASP A 253 CRYST1 90.458 64.485 70.978 90.00 93.25 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011055 0.000000 0.000627 0.00000 SCALE2 0.000000 0.015507 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014111 0.00000