HEADER TRANSFERASE 27-OCT-15 5EH0 TITLE RAPID DISCOVERY OF PYRIDO[3,4-D]PYRIMIDINE INHIBITORS OF MONOPOLAR TITLE 2 SPINDLE KINASE 1 (MPS1) USING A STRUCTURE-BASED HYDRIDIZATION TITLE 3 APPROACH COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE TTK; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHOSPHOTYROSINE PICKED THREONINE-PROTEIN KINASE,PYT; COMPND 5 EC: 2.7.12.1; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: N8-NEOPENTYL-N2-(2-METHOXY-4-(1-METHYL-1H-PYRAZOL-4- COMPND 8 YL)PHENYL)PYRIDO[3,4-D]PYRIMIDINE-2,8-DIAMINE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTK, MPS1, MPS1L1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS SPINDLE ASSEMBLY CHECKPOINT (SAC), ONCOLOGY TARGET PYRIDO[3, 4- KEYWDS 2 D]PYRIMIDINE BASED INHIBITORS SELECTIVE AGAINST MPS1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.INNOCENTI,H.L.WOODWARD,S.SOLANKI,N.NAUD,I.M.WESTWOOD,N.CRONIN, AUTHOR 2 A.HAYES,J.ROBERTS,A.T.HENLEY,R.BAKER,A.FAISAL,G.MAK,G.BOX,M.VALENTI, AUTHOR 3 A.DE HAVEN BRANDON,L.O'FEE,J.SAVILLE,J.SCHMITT,R.BURKE,R.L.M.VAN AUTHOR 4 MONTFORT,F.I.RAYMAUD,S.A.ECCLES,S.LINARDOPOULOS,J.BLAGG,S.HOELDER REVDAT 6 08-MAY-24 5EH0 1 REMARK REVDAT 5 10-JUL-19 5EH0 1 REMARK REVDAT 4 24-APR-19 5EH0 1 COMPND SOURCE REMARK DBREF REVDAT 4 2 1 SEQADV SEQRES HELIX ATOM REVDAT 3 30-AUG-17 5EH0 1 REMARK REVDAT 2 11-MAY-16 5EH0 1 JRNL REVDAT 1 20-APR-16 5EH0 0 JRNL AUTH P.INNOCENTI,H.L.WOODWARD,S.SOLANKI,S.NAUD,I.M.WESTWOOD, JRNL AUTH 2 N.CRONIN,A.HAYES,J.ROBERTS,A.T.HENLEY,R.BAKER,A.FAISAL, JRNL AUTH 3 G.W.MAK,G.BOX,M.VALENTI,A.DE HAVEN BRANDON,L.O'FEE, JRNL AUTH 4 H.SAVILLE,J.SCHMITT,B.MATIJSSEN,R.BURKE,R.L.VAN MONTFORT, JRNL AUTH 5 F.I.RAYNAUD,S.A.ECCLES,S.LINARDOPOULOS,J.BLAGG,S.HOELDER JRNL TITL RAPID DISCOVERY OF PYRIDO[3,4-D]PYRIMIDINE INHIBITORS OF JRNL TITL 2 MONOPOLAR SPINDLE KINASE 1 (MPS1) USING A STRUCTURE-BASED JRNL TITL 3 HYBRIDIZATION APPROACH. JRNL REF J.MED.CHEM. V. 59 3671 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27055065 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01811 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22237 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1178 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.69 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2919 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2429 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2754 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE : 0.2751 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.65 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 165 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1999 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 13.35410 REMARK 3 B22 (A**2) : -16.38060 REMARK 3 B33 (A**2) : 3.02650 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.351 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.162 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.141 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.164 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.144 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2085 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2839 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 690 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 49 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 326 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2085 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 282 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2347 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.87 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.41 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|516 - 662} REMARK 3 ORIGIN FOR THE GROUP (A): 1.2938 -31.5997 -16.2065 REMARK 3 T TENSOR REMARK 3 T11: -0.2238 T22: -0.0013 REMARK 3 T33: -0.2476 T12: 0.0128 REMARK 3 T13: 0.0659 T23: 0.1104 REMARK 3 L TENSOR REMARK 3 L11: 4.4011 L22: 2.3276 REMARK 3 L33: 3.3169 L12: 1.3445 REMARK 3 L13: 1.3239 L23: -0.2900 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: -0.5442 S13: -0.1521 REMARK 3 S21: 0.2105 S22: 0.0243 S23: 0.0518 REMARK 3 S31: -0.1118 S32: -0.0994 S33: -0.0011 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|663 - 794} REMARK 3 ORIGIN FOR THE GROUP (A): -12.4564 -44.5383 -29.0082 REMARK 3 T TENSOR REMARK 3 T11: -0.2448 T22: -0.0765 REMARK 3 T33: -0.0405 T12: -0.0981 REMARK 3 T13: -0.0184 T23: 0.0887 REMARK 3 L TENSOR REMARK 3 L11: 1.8679 L22: 2.7661 REMARK 3 L33: 3.6749 L12: -1.0989 REMARK 3 L13: -0.2342 L23: -0.4056 REMARK 3 S TENSOR REMARK 3 S11: 0.0509 S12: -0.0926 S13: -0.5442 REMARK 3 S21: -0.1570 S22: -0.0211 S23: 0.4811 REMARK 3 S31: 0.5082 S32: -0.4668 S33: -0.0298 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EH0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214899. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9680 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22272 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 40.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 2.55500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BISTRIS PROPANE PH 7.5 0.2 M REMARK 280 MGCL2 0.2M SODIUM FORMATE 20% PEG3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.21000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.96000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.10500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.21000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.96000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.10500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.21000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.96000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.10500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.21000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.96000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.10500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -105.92000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 675 REMARK 465 THR A 676 REMARK 465 SER A 677 REMARK 465 VAL A 678 REMARK 465 VAL A 679 REMARK 465 LYS A 680 REMARK 465 ASP A 681 REMARK 465 SER A 682 REMARK 465 GLN A 683 REMARK 465 VAL A 684 REMARK 465 SER A 699 REMARK 465 SER A 700 REMARK 465 SER A 701 REMARK 465 ARG A 702 REMARK 465 GLU A 703 REMARK 465 ASN A 704 REMARK 465 GLY A 705 REMARK 465 LYS A 706 REMARK 465 SER A 707 REMARK 465 LYS A 708 REMARK 465 SER A 709 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 516 CG CD OE1 NE2 REMARK 470 ARG A 523 CZ NH1 NH2 REMARK 470 LYS A 529 CE NZ REMARK 470 SER A 536 OG REMARK 470 LYS A 538 CD CE NZ REMARK 470 GLU A 545 CG CD OE1 OE2 REMARK 470 LYS A 546 CG CD CE NZ REMARK 470 LYS A 547 CG CD CE NZ REMARK 470 GLU A 559 CG CD OE1 OE2 REMARK 470 GLN A 563 CG CD OE1 NE2 REMARK 470 GLN A 580 CD OE1 NE2 REMARK 470 LYS A 614 CE NZ REMARK 470 LYS A 615 CD CE NZ REMARK 470 LYS A 616 CE NZ REMARK 470 LYS A 617 CG CD CE NZ REMARK 470 SER A 618 OG REMARK 470 LYS A 629 CG CD CE NZ REMARK 470 GLU A 633 CG CD OE1 OE2 REMARK 470 ASP A 657 CG OD1 OD2 REMARK 470 ASN A 669 CG OD1 ND2 REMARK 470 GLN A 670 CG CD OE1 NE2 REMARK 470 GLN A 672 CG CD OE1 NE2 REMARK 470 LYS A 696 CD CE NZ REMARK 470 ASP A 697 CG OD1 OD2 REMARK 470 LYS A 710 CG CD CE NZ REMARK 470 ILE A 738 CG1 CG2 CD1 REMARK 470 GLU A 753 CG CD OE1 OE2 REMARK 470 GLU A 755 CG CD OE1 OE2 REMARK 470 LYS A 762 CG CD CE NZ REMARK 470 LYS A 769 CG CD CE NZ REMARK 470 LYS A 773 CD CE NZ REMARK 470 LYS A 777 CG CD CE NZ REMARK 470 GLN A 794 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 544 N GLN A 548 2.04 REMARK 500 OD1 ASN A 544 N LYS A 547 2.10 REMARK 500 NZ LYS A 731 OE1 GLN A 736 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 547 23.56 81.69 REMARK 500 SER A 646 -3.07 75.04 REMARK 500 ASP A 697 51.32 -93.44 REMARK 500 PHE A 756 77.81 -118.59 REMARK 500 LEU A 772 32.53 -97.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5NW A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 802 DBREF 5EH0 A 516 794 UNP P33981 TTK_HUMAN 516 794 SEQADV 5EH0 GLN A 516 UNP P33981 GLU 516 CONFLICT SEQADV 5EH0 SER A 517 UNP P33981 CYS 517 CONFLICT SEQADV 5EH0 MET A 518 UNP P33981 ILE 518 CONFLICT SEQRES 1 A 279 GLN SER MET SER VAL LYS GLY ARG ILE TYR SER ILE LEU SEQRES 2 A 279 LYS GLN ILE GLY SER GLY GLY SER SER LYS VAL PHE GLN SEQRES 3 A 279 VAL LEU ASN GLU LYS LYS GLN ILE TYR ALA ILE LYS TYR SEQRES 4 A 279 VAL ASN LEU GLU GLU ALA ASP ASN GLN THR LEU ASP SER SEQRES 5 A 279 TYR ARG ASN GLU ILE ALA TYR LEU ASN LYS LEU GLN GLN SEQRES 6 A 279 HIS SER ASP LYS ILE ILE ARG LEU TYR ASP TYR GLU ILE SEQRES 7 A 279 THR ASP GLN TYR ILE TYR MET VAL MET GLU CYS GLY ASN SEQRES 8 A 279 ILE ASP LEU ASN SER TRP LEU LYS LYS LYS LYS SER ILE SEQRES 9 A 279 ASP PRO TRP GLU ARG LYS SER TYR TRP LYS ASN MET LEU SEQRES 10 A 279 GLU ALA VAL HIS THR ILE HIS GLN HIS GLY ILE VAL HIS SEQRES 11 A 279 SER ASP LEU LYS PRO ALA ASN PHE LEU ILE VAL ASP GLY SEQRES 12 A 279 MET LEU LYS LEU ILE ASP PHE GLY ILE ALA ASN GLN MET SEQRES 13 A 279 GLN PRO ASP THR THR SER VAL VAL LYS ASP SER GLN VAL SEQRES 14 A 279 GLY THR VAL ASN TYR MET PRO PRO GLU ALA ILE LYS ASP SEQRES 15 A 279 MET SER SER SER ARG GLU ASN GLY LYS SER LYS SER LYS SEQRES 16 A 279 ILE SER PRO LYS SER ASP VAL TRP SER LEU GLY CYS ILE SEQRES 17 A 279 LEU TYR TYR MET THR TYR GLY LYS THR PRO PHE GLN GLN SEQRES 18 A 279 ILE ILE ASN GLN ILE SER LYS LEU HIS ALA ILE ILE ASP SEQRES 19 A 279 PRO ASN HIS GLU ILE GLU PHE PRO ASP ILE PRO GLU LYS SEQRES 20 A 279 ASP LEU GLN ASP VAL LEU LYS CYS CYS LEU LYS ARG ASP SEQRES 21 A 279 PRO LYS GLN ARG ILE SER ILE PRO GLU LEU LEU ALA HIS SEQRES 22 A 279 PRO TYR VAL GLN ILE GLN HET 5NW A 801 31 HET DMS A 802 4 HETNAM 5NW N2-(2-METHOXY-4-(1-METHYL-1H-PYRAZOL-4-YL)PHENYL)-N8- HETNAM 2 5NW NEOPENTYLPYRIDO[3,4-D]PYRIMIDINE-2,8-DIAMINE HETNAM DMS DIMETHYL SULFOXIDE FORMUL 2 5NW C23 H27 N7 O FORMUL 3 DMS C2 H6 O S FORMUL 4 HOH *31(H2 O) HELIX 1 AA1 ASP A 561 GLN A 579 1 19 HELIX 2 AA2 LEU A 609 LYS A 616 1 8 HELIX 3 AA3 ASP A 620 HIS A 641 1 22 HELIX 4 AA4 LYS A 649 ALA A 651 5 3 HELIX 5 AA5 PRO A 691 ASP A 697 1 7 HELIX 6 AA6 SER A 712 GLY A 730 1 19 HELIX 7 AA7 ASN A 739 ASP A 749 1 11 HELIX 8 AA8 GLU A 761 LEU A 772 1 12 HELIX 9 AA9 SER A 781 LEU A 786 1 6 HELIX 10 AB1 HIS A 788 ILE A 793 1 6 SHEET 1 AA1 6 SER A 517 VAL A 520 0 SHEET 2 AA1 6 ARG A 523 SER A 533 -1 O TYR A 525 N MET A 518 SHEET 3 AA1 6 SER A 537 LEU A 543 -1 O GLN A 541 N LEU A 528 SHEET 4 AA1 6 ILE A 549 ASN A 556 -1 O TYR A 554 N LYS A 538 SHEET 5 AA1 6 TYR A 597 MET A 602 -1 O MET A 602 N ALA A 551 SHEET 6 AA1 6 LEU A 588 ILE A 593 -1 N TYR A 589 O VAL A 601 SHEET 1 AA2 3 SER A 517 VAL A 520 0 SHEET 2 AA2 3 ARG A 523 SER A 533 -1 O TYR A 525 N MET A 518 SHEET 3 AA2 3 GLN A 672 PRO A 673 -1 O GLN A 672 N SER A 533 SHEET 1 AA3 3 ILE A 607 ASP A 608 0 SHEET 2 AA3 3 PHE A 653 ILE A 655 -1 O ILE A 655 N ILE A 607 SHEET 3 AA3 3 LEU A 660 LEU A 662 -1 O LYS A 661 N LEU A 654 SITE 1 AC1 14 ILE A 531 GLN A 541 ALA A 551 GLU A 603 SITE 2 AC1 14 CYS A 604 GLY A 605 ASN A 606 ILE A 607 SITE 3 AC1 14 ASP A 608 SER A 611 ALA A 651 LEU A 654 SITE 4 AC1 14 ILE A 663 MET A 671 SITE 1 AC2 2 TYR A 525 TYR A 550 CRYST1 70.420 105.920 112.210 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014201 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009441 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008912 0.00000