HEADER TRANSFERASE 27-OCT-15 5EH0
TITLE RAPID DISCOVERY OF PYRIDO[3,4-D]PYRIMIDINE INHIBITORS OF MONOPOLAR
TITLE 2 SPINDLE KINASE 1 (MPS1) USING A STRUCTURE-BASED HYDRIDIZATION
TITLE 3 APPROACH
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE TTK;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: PHOSPHOTYROSINE PICKED THREONINE-PROTEIN KINASE,PYT;
COMPND 5 EC: 2.7.12.1;
COMPND 6 ENGINEERED: YES;
COMPND 7 OTHER_DETAILS: N8-NEOPENTYL-N2-(2-METHOXY-4-(1-METHYL-1H-PYRAZOL-4-
COMPND 8 YL)PHENYL)PYRIDO[3,4-D]PYRIMIDINE-2,8-DIAMINE
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: TTK, MPS1, MPS1L1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693
KEYWDS SPINDLE ASSEMBLY CHECKPOINT (SAC), ONCOLOGY TARGET PYRIDO[3, 4-
KEYWDS 2 D]PYRIMIDINE BASED INHIBITORS SELECTIVE AGAINST MPS1, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR P.INNOCENTI,H.L.WOODWARD,S.SOLANKI,N.NAUD,I.M.WESTWOOD,N.CRONIN,
AUTHOR 2 A.HAYES,J.ROBERTS,A.T.HENLEY,R.BAKER,A.FAISAL,G.MAK,G.BOX,M.VALENTI,
AUTHOR 3 A.DE HAVEN BRANDON,L.O'FEE,J.SAVILLE,J.SCHMITT,R.BURKE,R.L.M.VAN
AUTHOR 4 MONTFORT,F.I.RAYMAUD,S.A.ECCLES,S.LINARDOPOULOS,J.BLAGG,S.HOELDER
REVDAT 6 08-MAY-24 5EH0 1 REMARK
REVDAT 5 10-JUL-19 5EH0 1 REMARK
REVDAT 4 24-APR-19 5EH0 1 COMPND SOURCE REMARK DBREF
REVDAT 4 2 1 SEQADV SEQRES HELIX ATOM
REVDAT 3 30-AUG-17 5EH0 1 REMARK
REVDAT 2 11-MAY-16 5EH0 1 JRNL
REVDAT 1 20-APR-16 5EH0 0
JRNL AUTH P.INNOCENTI,H.L.WOODWARD,S.SOLANKI,S.NAUD,I.M.WESTWOOD,
JRNL AUTH 2 N.CRONIN,A.HAYES,J.ROBERTS,A.T.HENLEY,R.BAKER,A.FAISAL,
JRNL AUTH 3 G.W.MAK,G.BOX,M.VALENTI,A.DE HAVEN BRANDON,L.O'FEE,
JRNL AUTH 4 H.SAVILLE,J.SCHMITT,B.MATIJSSEN,R.BURKE,R.L.VAN MONTFORT,
JRNL AUTH 5 F.I.RAYNAUD,S.A.ECCLES,S.LINARDOPOULOS,J.BLAGG,S.HOELDER
JRNL TITL RAPID DISCOVERY OF PYRIDO[3,4-D]PYRIMIDINE INHIBITORS OF
JRNL TITL 2 MONOPOLAR SPINDLE KINASE 1 (MPS1) USING A STRUCTURE-BASED
JRNL TITL 3 HYBRIDIZATION APPROACH.
JRNL REF J.MED.CHEM. V. 59 3671 2016
JRNL REFN ISSN 0022-2623
JRNL PMID 27055065
JRNL DOI 10.1021/ACS.JMEDCHEM.5B01811
REMARK 2
REMARK 2 RESOLUTION. 2.18 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER-TNT
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK,
REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.78
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 22237
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.198
REMARK 3 R VALUE (WORKING SET) : 0.196
REMARK 3 FREE R VALUE : 0.217
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300
REMARK 3 FREE R VALUE TEST SET COUNT : 1178
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 11
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.29
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.69
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2919
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2429
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2754
REMARK 3 BIN R VALUE (WORKING SET) : 0.2410
REMARK 3 BIN FREE R VALUE : 0.2751
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.65
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 165
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1999
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 35
REMARK 3 SOLVENT ATOMS : 31
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 70.46
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.21
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 13.35410
REMARK 3 B22 (A**2) : -16.38060
REMARK 3 B33 (A**2) : 3.02650
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.351
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.162
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.141
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.164
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.144
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 2085 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 2839 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 690 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 49 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 326 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 2085 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 282 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 2347 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.06
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.87
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.41
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: {A|516 - 662}
REMARK 3 ORIGIN FOR THE GROUP (A): 1.2938 -31.5997 -16.2065
REMARK 3 T TENSOR
REMARK 3 T11: -0.2238 T22: -0.0013
REMARK 3 T33: -0.2476 T12: 0.0128
REMARK 3 T13: 0.0659 T23: 0.1104
REMARK 3 L TENSOR
REMARK 3 L11: 4.4011 L22: 2.3276
REMARK 3 L33: 3.3169 L12: 1.3445
REMARK 3 L13: 1.3239 L23: -0.2900
REMARK 3 S TENSOR
REMARK 3 S11: -0.0233 S12: -0.5442 S13: -0.1521
REMARK 3 S21: 0.2105 S22: 0.0243 S23: 0.0518
REMARK 3 S31: -0.1118 S32: -0.0994 S33: -0.0011
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: {A|663 - 794}
REMARK 3 ORIGIN FOR THE GROUP (A): -12.4564 -44.5383 -29.0082
REMARK 3 T TENSOR
REMARK 3 T11: -0.2448 T22: -0.0765
REMARK 3 T33: -0.0405 T12: -0.0981
REMARK 3 T13: -0.0184 T23: 0.0887
REMARK 3 L TENSOR
REMARK 3 L11: 1.8679 L22: 2.7661
REMARK 3 L33: 3.6749 L12: -1.0989
REMARK 3 L13: -0.2342 L23: -0.4056
REMARK 3 S TENSOR
REMARK 3 S11: 0.0509 S12: -0.0926 S13: -0.5442
REMARK 3 S21: -0.1570 S22: -0.0211 S23: 0.4811
REMARK 3 S31: 0.5082 S32: -0.4668 S33: -0.0298
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5EH0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-OCT-15.
REMARK 100 THE DEPOSITION ID IS D_1000214899.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 29-JUL-12
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I24
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9680
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.7
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22272
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180
REMARK 200 RESOLUTION RANGE LOW (A) : 40.540
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 4.400
REMARK 200 R MERGE (I) : 0.04200
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7
REMARK 200 DATA REDUNDANCY IN SHELL : 4.30
REMARK 200 R MERGE FOR SHELL (I) : 2.55500
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.500
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER 2.5.7
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 64.67
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BISTRIS PROPANE PH 7.5 0.2 M
REMARK 280 MGCL2 0.2M SODIUM FORMATE 20% PEG3350, VAPOR DIFFUSION, SITTING
REMARK 280 DROP, TEMPERATURE 291.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X,Y,-Z
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z+1/2
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.21000
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.96000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.10500
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.21000
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.96000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.10500
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.21000
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.96000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.10500
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.21000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.96000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.10500
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2320 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 22270 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -105.92000
REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 THR A 675
REMARK 465 THR A 676
REMARK 465 SER A 677
REMARK 465 VAL A 678
REMARK 465 VAL A 679
REMARK 465 LYS A 680
REMARK 465 ASP A 681
REMARK 465 SER A 682
REMARK 465 GLN A 683
REMARK 465 VAL A 684
REMARK 465 SER A 699
REMARK 465 SER A 700
REMARK 465 SER A 701
REMARK 465 ARG A 702
REMARK 465 GLU A 703
REMARK 465 ASN A 704
REMARK 465 GLY A 705
REMARK 465 LYS A 706
REMARK 465 SER A 707
REMARK 465 LYS A 708
REMARK 465 SER A 709
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLN A 516 CG CD OE1 NE2
REMARK 470 ARG A 523 CZ NH1 NH2
REMARK 470 LYS A 529 CE NZ
REMARK 470 SER A 536 OG
REMARK 470 LYS A 538 CD CE NZ
REMARK 470 GLU A 545 CG CD OE1 OE2
REMARK 470 LYS A 546 CG CD CE NZ
REMARK 470 LYS A 547 CG CD CE NZ
REMARK 470 GLU A 559 CG CD OE1 OE2
REMARK 470 GLN A 563 CG CD OE1 NE2
REMARK 470 GLN A 580 CD OE1 NE2
REMARK 470 LYS A 614 CE NZ
REMARK 470 LYS A 615 CD CE NZ
REMARK 470 LYS A 616 CE NZ
REMARK 470 LYS A 617 CG CD CE NZ
REMARK 470 SER A 618 OG
REMARK 470 LYS A 629 CG CD CE NZ
REMARK 470 GLU A 633 CG CD OE1 OE2
REMARK 470 ASP A 657 CG OD1 OD2
REMARK 470 ASN A 669 CG OD1 ND2
REMARK 470 GLN A 670 CG CD OE1 NE2
REMARK 470 GLN A 672 CG CD OE1 NE2
REMARK 470 LYS A 696 CD CE NZ
REMARK 470 ASP A 697 CG OD1 OD2
REMARK 470 LYS A 710 CG CD CE NZ
REMARK 470 ILE A 738 CG1 CG2 CD1
REMARK 470 GLU A 753 CG CD OE1 OE2
REMARK 470 GLU A 755 CG CD OE1 OE2
REMARK 470 LYS A 762 CG CD CE NZ
REMARK 470 LYS A 769 CG CD CE NZ
REMARK 470 LYS A 773 CD CE NZ
REMARK 470 LYS A 777 CG CD CE NZ
REMARK 470 GLN A 794 CG CD OE1 NE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OD1 ASN A 544 N GLN A 548 2.04
REMARK 500 OD1 ASN A 544 N LYS A 547 2.10
REMARK 500 NZ LYS A 731 OE1 GLN A 736 2.12
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LYS A 547 23.56 81.69
REMARK 500 SER A 646 -3.07 75.04
REMARK 500 ASP A 697 51.32 -93.44
REMARK 500 PHE A 756 77.81 -118.59
REMARK 500 LEU A 772 32.53 -97.27
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 5NW A 801
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 802
DBREF 5EH0 A 516 794 UNP P33981 TTK_HUMAN 516 794
SEQADV 5EH0 GLN A 516 UNP P33981 GLU 516 CONFLICT
SEQADV 5EH0 SER A 517 UNP P33981 CYS 517 CONFLICT
SEQADV 5EH0 MET A 518 UNP P33981 ILE 518 CONFLICT
SEQRES 1 A 279 GLN SER MET SER VAL LYS GLY ARG ILE TYR SER ILE LEU
SEQRES 2 A 279 LYS GLN ILE GLY SER GLY GLY SER SER LYS VAL PHE GLN
SEQRES 3 A 279 VAL LEU ASN GLU LYS LYS GLN ILE TYR ALA ILE LYS TYR
SEQRES 4 A 279 VAL ASN LEU GLU GLU ALA ASP ASN GLN THR LEU ASP SER
SEQRES 5 A 279 TYR ARG ASN GLU ILE ALA TYR LEU ASN LYS LEU GLN GLN
SEQRES 6 A 279 HIS SER ASP LYS ILE ILE ARG LEU TYR ASP TYR GLU ILE
SEQRES 7 A 279 THR ASP GLN TYR ILE TYR MET VAL MET GLU CYS GLY ASN
SEQRES 8 A 279 ILE ASP LEU ASN SER TRP LEU LYS LYS LYS LYS SER ILE
SEQRES 9 A 279 ASP PRO TRP GLU ARG LYS SER TYR TRP LYS ASN MET LEU
SEQRES 10 A 279 GLU ALA VAL HIS THR ILE HIS GLN HIS GLY ILE VAL HIS
SEQRES 11 A 279 SER ASP LEU LYS PRO ALA ASN PHE LEU ILE VAL ASP GLY
SEQRES 12 A 279 MET LEU LYS LEU ILE ASP PHE GLY ILE ALA ASN GLN MET
SEQRES 13 A 279 GLN PRO ASP THR THR SER VAL VAL LYS ASP SER GLN VAL
SEQRES 14 A 279 GLY THR VAL ASN TYR MET PRO PRO GLU ALA ILE LYS ASP
SEQRES 15 A 279 MET SER SER SER ARG GLU ASN GLY LYS SER LYS SER LYS
SEQRES 16 A 279 ILE SER PRO LYS SER ASP VAL TRP SER LEU GLY CYS ILE
SEQRES 17 A 279 LEU TYR TYR MET THR TYR GLY LYS THR PRO PHE GLN GLN
SEQRES 18 A 279 ILE ILE ASN GLN ILE SER LYS LEU HIS ALA ILE ILE ASP
SEQRES 19 A 279 PRO ASN HIS GLU ILE GLU PHE PRO ASP ILE PRO GLU LYS
SEQRES 20 A 279 ASP LEU GLN ASP VAL LEU LYS CYS CYS LEU LYS ARG ASP
SEQRES 21 A 279 PRO LYS GLN ARG ILE SER ILE PRO GLU LEU LEU ALA HIS
SEQRES 22 A 279 PRO TYR VAL GLN ILE GLN
HET 5NW A 801 31
HET DMS A 802 4
HETNAM 5NW N2-(2-METHOXY-4-(1-METHYL-1H-PYRAZOL-4-YL)PHENYL)-N8-
HETNAM 2 5NW NEOPENTYLPYRIDO[3,4-D]PYRIMIDINE-2,8-DIAMINE
HETNAM DMS DIMETHYL SULFOXIDE
FORMUL 2 5NW C23 H27 N7 O
FORMUL 3 DMS C2 H6 O S
FORMUL 4 HOH *31(H2 O)
HELIX 1 AA1 ASP A 561 GLN A 579 1 19
HELIX 2 AA2 LEU A 609 LYS A 616 1 8
HELIX 3 AA3 ASP A 620 HIS A 641 1 22
HELIX 4 AA4 LYS A 649 ALA A 651 5 3
HELIX 5 AA5 PRO A 691 ASP A 697 1 7
HELIX 6 AA6 SER A 712 GLY A 730 1 19
HELIX 7 AA7 ASN A 739 ASP A 749 1 11
HELIX 8 AA8 GLU A 761 LEU A 772 1 12
HELIX 9 AA9 SER A 781 LEU A 786 1 6
HELIX 10 AB1 HIS A 788 ILE A 793 1 6
SHEET 1 AA1 6 SER A 517 VAL A 520 0
SHEET 2 AA1 6 ARG A 523 SER A 533 -1 O TYR A 525 N MET A 518
SHEET 3 AA1 6 SER A 537 LEU A 543 -1 O GLN A 541 N LEU A 528
SHEET 4 AA1 6 ILE A 549 ASN A 556 -1 O TYR A 554 N LYS A 538
SHEET 5 AA1 6 TYR A 597 MET A 602 -1 O MET A 602 N ALA A 551
SHEET 6 AA1 6 LEU A 588 ILE A 593 -1 N TYR A 589 O VAL A 601
SHEET 1 AA2 3 SER A 517 VAL A 520 0
SHEET 2 AA2 3 ARG A 523 SER A 533 -1 O TYR A 525 N MET A 518
SHEET 3 AA2 3 GLN A 672 PRO A 673 -1 O GLN A 672 N SER A 533
SHEET 1 AA3 3 ILE A 607 ASP A 608 0
SHEET 2 AA3 3 PHE A 653 ILE A 655 -1 O ILE A 655 N ILE A 607
SHEET 3 AA3 3 LEU A 660 LEU A 662 -1 O LYS A 661 N LEU A 654
SITE 1 AC1 14 ILE A 531 GLN A 541 ALA A 551 GLU A 603
SITE 2 AC1 14 CYS A 604 GLY A 605 ASN A 606 ILE A 607
SITE 3 AC1 14 ASP A 608 SER A 611 ALA A 651 LEU A 654
SITE 4 AC1 14 ILE A 663 MET A 671
SITE 1 AC2 2 TYR A 525 TYR A 550
CRYST1 70.420 105.920 112.210 90.00 90.00 90.00 I 2 2 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014201 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009441 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008912 0.00000