HEADER MEMBRANE PROTEIN 28-OCT-15 5EHS TITLE CRYSTAL STRUCTURE OF THE DROSOPHILA CG3822 KAIR1D LIGAND BINDING TITLE 2 DOMAIN COMPLEX WITH D-AP5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RE06730P,GH17276; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 411-526; UNP RESIDUES 650-794,UNP RESIDUES COMPND 5 411-526; UNP RESIDUES 650-794; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER, DROSOPHILA GRIMSHAWI; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227, 7222; SOURCE 5 GENE: CG3822, DGRI\GH17276, DGRI_GH17276, GH17276; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B(DE3) KEYWDS MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.DHARKAR,M.L.MAYER REVDAT 3 27-SEP-23 5EHS 1 REMARK REVDAT 2 21-DEC-16 5EHS 1 JRNL REVDAT 1 09-NOV-16 5EHS 0 JRNL AUTH Y.LI,P.DHARKAR,T.H.HAN,M.SERPE,C.H.LEE,M.L.MAYER JRNL TITL NOVEL FUNCTIONAL PROPERTIES OF DROSOPHILA CNS GLUTAMATE JRNL TITL 2 RECEPTORS. JRNL REF NEURON V. 92 1036 2016 JRNL REFN ISSN 1097-4199 JRNL PMID 27889096 JRNL DOI 10.1016/J.NEURON.2016.10.058 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1-2155_1692: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 97494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 4580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8992 - 5.4313 0.97 3122 102 0.1690 0.2301 REMARK 3 2 5.4313 - 4.3126 0.98 3122 168 0.1301 0.1496 REMARK 3 3 4.3126 - 3.7680 0.99 3130 172 0.1429 0.1570 REMARK 3 4 3.7680 - 3.4237 0.99 3044 178 0.1616 0.2255 REMARK 3 5 3.4237 - 3.1784 1.00 3272 116 0.1812 0.2573 REMARK 3 6 3.1784 - 2.9910 1.00 3168 176 0.1944 0.2418 REMARK 3 7 2.9910 - 2.8413 1.00 3108 176 0.1962 0.2419 REMARK 3 8 2.8413 - 2.7176 1.00 3194 128 0.1987 0.2970 REMARK 3 9 2.7176 - 2.6130 1.00 3178 148 0.2015 0.2918 REMARK 3 10 2.6130 - 2.5229 1.00 3276 96 0.1973 0.2809 REMARK 3 11 2.5229 - 2.4440 1.00 3148 172 0.1931 0.2436 REMARK 3 12 2.4440 - 2.3742 1.00 3116 148 0.1891 0.2172 REMARK 3 13 2.3742 - 2.3117 1.00 3220 184 0.1919 0.2487 REMARK 3 14 2.3117 - 2.2553 1.00 3100 156 0.1881 0.2093 REMARK 3 15 2.2553 - 2.2040 1.00 3190 160 0.1848 0.2445 REMARK 3 16 2.2040 - 2.1571 1.00 3248 148 0.2035 0.2049 REMARK 3 17 2.1571 - 2.1140 1.00 3076 184 0.2067 0.2909 REMARK 3 18 2.1140 - 2.0741 1.00 3222 184 0.2176 0.2715 REMARK 3 19 2.0741 - 2.0370 1.00 3196 132 0.2043 0.2444 REMARK 3 20 2.0370 - 2.0025 1.00 3188 128 0.2188 0.2686 REMARK 3 21 2.0025 - 1.9702 1.00 3116 184 0.2251 0.2690 REMARK 3 22 1.9702 - 1.9399 1.00 3226 128 0.2265 0.2638 REMARK 3 23 1.9399 - 1.9114 1.00 3228 148 0.2214 0.3147 REMARK 3 24 1.9114 - 1.8844 1.00 3142 120 0.2302 0.2727 REMARK 3 25 1.8844 - 1.8590 0.99 3124 202 0.2377 0.2857 REMARK 3 26 1.8590 - 1.8348 0.97 3042 190 0.2482 0.2771 REMARK 3 27 1.8348 - 1.8119 0.94 2942 168 0.2390 0.2898 REMARK 3 28 1.8119 - 1.7901 0.90 2884 118 0.2495 0.2503 REMARK 3 29 1.7901 - 1.7693 0.85 2586 182 0.2527 0.2602 REMARK 3 30 1.7693 - 1.7494 0.69 2306 84 0.2725 0.3436 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4229 REMARK 3 ANGLE : 1.130 5715 REMARK 3 CHIRALITY : 0.059 630 REMARK 3 PLANARITY : 0.008 726 REMARK 3 DIHEDRAL : 12.518 2553 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 5:113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.3297 41.3112 18.2128 REMARK 3 T TENSOR REMARK 3 T11: 0.2695 T22: 0.0301 REMARK 3 T33: 0.1984 T12: 0.0148 REMARK 3 T13: 0.0126 T23: 0.0591 REMARK 3 L TENSOR REMARK 3 L11: 0.6369 L22: 1.1022 REMARK 3 L33: 0.6383 L12: -0.0804 REMARK 3 L13: -0.1561 L23: 0.0165 REMARK 3 S TENSOR REMARK 3 S11: 0.1626 S12: 0.0871 S13: 0.2629 REMARK 3 S21: 0.4006 S22: -0.1060 S23: -0.1295 REMARK 3 S31: -0.3207 S32: -0.0811 S33: 0.0021 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 114:221 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.6650 32.7536 -5.1251 REMARK 3 T TENSOR REMARK 3 T11: 0.1983 T22: 0.2741 REMARK 3 T33: 0.1510 T12: 0.1022 REMARK 3 T13: 0.0107 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 0.9005 L22: 0.9864 REMARK 3 L33: 0.7087 L12: -0.1909 REMARK 3 L13: -0.2513 L23: -0.0073 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: -0.0020 S13: 0.0860 REMARK 3 S21: -0.0258 S22: 0.0651 S23: -0.1881 REMARK 3 S31: -0.1035 S32: -0.1502 S33: -0.0497 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 222:264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3965 34.6619 11.9721 REMARK 3 T TENSOR REMARK 3 T11: 0.1313 T22: 0.1757 REMARK 3 T33: 0.0881 T12: 0.0573 REMARK 3 T13: 0.0040 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.2119 L22: 1.1250 REMARK 3 L33: 1.2790 L12: 0.2655 REMARK 3 L13: 0.3142 L23: -0.1332 REMARK 3 S TENSOR REMARK 3 S11: 0.0651 S12: 0.2296 S13: 0.0655 REMARK 3 S21: 0.0369 S22: -0.1638 S23: 0.0450 REMARK 3 S31: -0.0885 S32: -0.2171 S33: 0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 5:111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.1702 7.6550 15.1575 REMARK 3 T TENSOR REMARK 3 T11: 0.2282 T22: -0.0885 REMARK 3 T33: 0.3327 T12: -0.0141 REMARK 3 T13: 0.1040 T23: -0.1931 REMARK 3 L TENSOR REMARK 3 L11: 0.6739 L22: 0.6607 REMARK 3 L33: 0.6348 L12: 0.0588 REMARK 3 L13: 0.2017 L23: -0.1442 REMARK 3 S TENSOR REMARK 3 S11: -0.0303 S12: 0.1281 S13: -0.5082 REMARK 3 S21: 0.1539 S22: -0.1513 S23: 0.2036 REMARK 3 S31: 0.4132 S32: -0.0537 S33: -0.1236 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 112:223 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5037 18.9414 -7.6161 REMARK 3 T TENSOR REMARK 3 T11: 0.2056 T22: 0.4197 REMARK 3 T33: 0.1834 T12: 0.0545 REMARK 3 T13: -0.0768 T23: -0.2659 REMARK 3 L TENSOR REMARK 3 L11: 0.3241 L22: 0.4088 REMARK 3 L33: 0.9088 L12: 0.0138 REMARK 3 L13: 0.2116 L23: 0.1931 REMARK 3 S TENSOR REMARK 3 S11: -0.0601 S12: 0.0595 S13: -0.0190 REMARK 3 S21: -0.1853 S22: -0.1110 S23: 0.2051 REMARK 3 S31: 0.0326 S32: -0.2787 S33: -0.0152 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 224:262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.7684 15.3524 12.3686 REMARK 3 T TENSOR REMARK 3 T11: 0.1452 T22: 0.1494 REMARK 3 T33: 0.1140 T12: 0.0471 REMARK 3 T13: 0.0129 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 1.1689 L22: 0.8676 REMARK 3 L33: 1.2435 L12: 0.2012 REMARK 3 L13: -0.3509 L23: 0.1843 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: 0.1793 S13: -0.1711 REMARK 3 S21: 0.1144 S22: -0.1089 S23: 0.0358 REMARK 3 S31: 0.1348 S32: 0.1044 S33: 0.0463 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EHS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214934. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97494 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.57600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5EHM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUFFER 150 NACL 10 HEPES PH 7.5 20 MM REMARK 280 DL-AP5 2 MM EDTA RESERVOIR 19% PEG 1K 0.1 M NA CITRATE PH 6.1, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.29900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 98.59800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 ASN A 4 REMARK 465 GLY A 265 REMARK 465 LYS A 266 REMARK 465 CYS A 267 REMARK 465 ARG A 268 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 ASN B 4 REMARK 465 GLY B 263 REMARK 465 GLY B 264 REMARK 465 GLY B 265 REMARK 465 LYS B 266 REMARK 465 CYS B 267 REMARK 465 ARG B 268 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 5 CG CD1 CD2 REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 ASN A 7 CG OD1 ND2 REMARK 470 LEU B 5 CG CD1 CD2 REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 ASN B 7 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H SER A 31 O HOH A 406 1.53 REMARK 500 HD22 ASN B 33 O HOH B 407 1.58 REMARK 500 O HOH B 428 O HOH B 461 2.00 REMARK 500 O HOH A 496 O HOH A 551 2.12 REMARK 500 OE1 GLU A 46 O HOH A 401 2.18 REMARK 500 OE2 GLU B 101 O HOH B 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 101 CB GLU B 101 CG 0.185 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 7 0.21 93.66 REMARK 500 ASN A 76 -169.82 -119.48 REMARK 500 GLU A 260 -70.75 -122.81 REMARK 500 ARG A 262 -75.09 -103.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 586 DISTANCE = 6.58 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2JJ A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5OY A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2JJ B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5OY B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DTB RELATED DB: PDB REMARK 900 GLUTAMATE COMPLEX REMARK 900 RELATED ID: 5EHM RELATED DB: PDB DBREF 5EHS A 3 121 UNP Q8MS48 Q8MS48_DROME 411 529 DBREF 5EHS A 124 268 UNP B4JUF1 B4JUF1_DROGR 655 799 DBREF 5EHS B 3 121 UNP Q8MS48 Q8MS48_DROME 411 529 DBREF 5EHS B 124 268 UNP B4JUF1 B4JUF1_DROGR 655 799 SEQADV 5EHS GLY A 1 UNP Q8MS48 EXPRESSION TAG SEQADV 5EHS SER A 2 UNP Q8MS48 EXPRESSION TAG SEQADV 5EHS GLY A 122 UNP Q8MS48 LINKER SEQADV 5EHS THR A 123 UNP Q8MS48 LINKER SEQADV 5EHS GLY B 1 UNP Q8MS48 EXPRESSION TAG SEQADV 5EHS SER B 2 UNP Q8MS48 EXPRESSION TAG SEQADV 5EHS GLY B 122 UNP Q8MS48 LINKER SEQADV 5EHS THR B 123 UNP Q8MS48 LINKER SEQRES 1 A 268 GLY SER ALA ASN LEU LYS ASN LYS THR LEU VAL VAL THR SEQRES 2 A 268 THR ILE LEU SER ASN PRO TYR CYS MET ARG LYS GLU SER SEQRES 3 A 268 ALA ILE PRO LEU SER GLY ASN ASP GLN PHE GLU GLY TYR SEQRES 4 A 268 ALA VAL ASP LEU ILE HIS GLU ILE SER LYS SER LEU GLY SEQRES 5 A 268 PHE ASN TYR LYS ILE GLN LEU VAL PRO ASP GLY SER TYR SEQRES 6 A 268 GLY SER LEU ASN LYS LEU THR GLY GLU TRP ASN GLY MET SEQRES 7 A 268 ILE ARG GLU LEU LEU GLU GLN ARG ALA ASP LEU ALA ILE SEQRES 8 A 268 ALA ASP LEU THR ILE THR PHE GLU ARG GLU GLN ALA VAL SEQRES 9 A 268 ASP PHE THR THR PRO PHE MET ASN LEU GLY VAL SER ILE SEQRES 10 A 268 LEU TYR ARG LYS GLY THR PRO ILE GLU SER ALA GLU ASP SEQRES 11 A 268 LEU ALA LYS GLN THR ARG ILE LYS TYR GLY ALA LEU LYS SEQRES 12 A 268 GLY GLY SER THR ALA ALA PHE PHE ARG ASP SER LYS ILE SEQRES 13 A 268 SER THR TYR GLN ARG MET TRP SER PHE MET GLU SER ALA SEQRES 14 A 268 ARG PRO SER VAL PHE THR ALA SER ASN GLY GLU GLY VAL SEQRES 15 A 268 GLU ARG VAL ALA LYS GLY LYS GLY SER TYR ALA PHE LEU SEQRES 16 A 268 MET GLU SER THR SER ILE GLU TYR VAL THR GLU ARG ASN SEQRES 17 A 268 CYS GLU LEU THR GLN VAL GLY GLY MET LEU ASP THR LYS SEQRES 18 A 268 SER TYR GLY ILE ALA THR PRO PRO ASN SER PRO TYR ARG SEQRES 19 A 268 THR ALA ILE ASN SER VAL ILE LEU LYS LEU GLN GLU GLU SEQRES 20 A 268 GLY LYS LEU HIS ILE LEU LYS THR LYS TRP TRP LYS GLU SEQRES 21 A 268 LYS ARG GLY GLY GLY LYS CYS ARG SEQRES 1 B 268 GLY SER ALA ASN LEU LYS ASN LYS THR LEU VAL VAL THR SEQRES 2 B 268 THR ILE LEU SER ASN PRO TYR CYS MET ARG LYS GLU SER SEQRES 3 B 268 ALA ILE PRO LEU SER GLY ASN ASP GLN PHE GLU GLY TYR SEQRES 4 B 268 ALA VAL ASP LEU ILE HIS GLU ILE SER LYS SER LEU GLY SEQRES 5 B 268 PHE ASN TYR LYS ILE GLN LEU VAL PRO ASP GLY SER TYR SEQRES 6 B 268 GLY SER LEU ASN LYS LEU THR GLY GLU TRP ASN GLY MET SEQRES 7 B 268 ILE ARG GLU LEU LEU GLU GLN ARG ALA ASP LEU ALA ILE SEQRES 8 B 268 ALA ASP LEU THR ILE THR PHE GLU ARG GLU GLN ALA VAL SEQRES 9 B 268 ASP PHE THR THR PRO PHE MET ASN LEU GLY VAL SER ILE SEQRES 10 B 268 LEU TYR ARG LYS GLY THR PRO ILE GLU SER ALA GLU ASP SEQRES 11 B 268 LEU ALA LYS GLN THR ARG ILE LYS TYR GLY ALA LEU LYS SEQRES 12 B 268 GLY GLY SER THR ALA ALA PHE PHE ARG ASP SER LYS ILE SEQRES 13 B 268 SER THR TYR GLN ARG MET TRP SER PHE MET GLU SER ALA SEQRES 14 B 268 ARG PRO SER VAL PHE THR ALA SER ASN GLY GLU GLY VAL SEQRES 15 B 268 GLU ARG VAL ALA LYS GLY LYS GLY SER TYR ALA PHE LEU SEQRES 16 B 268 MET GLU SER THR SER ILE GLU TYR VAL THR GLU ARG ASN SEQRES 17 B 268 CYS GLU LEU THR GLN VAL GLY GLY MET LEU ASP THR LYS SEQRES 18 B 268 SER TYR GLY ILE ALA THR PRO PRO ASN SER PRO TYR ARG SEQRES 19 B 268 THR ALA ILE ASN SER VAL ILE LEU LYS LEU GLN GLU GLU SEQRES 20 B 268 GLY LYS LEU HIS ILE LEU LYS THR LYS TRP TRP LYS GLU SEQRES 21 B 268 LYS ARG GLY GLY GLY LYS CYS ARG HET 2JJ A 301 20 HET 5OY A 302 20 HET 2JJ B 301 20 HET 5OY B 302 20 HETNAM 2JJ 5-PHOSPHONO-D-NORVALINE HETNAM 5OY 5-PHOSPHONO-L-NORVALINE HETSYN 5OY (2~{S})-2-AZANYL-5-PHOSPHONO-PENTANOIC ACID FORMUL 3 2JJ 2(C5 H12 N O5 P) FORMUL 4 5OY 2(C5 H12 N O5 P) FORMUL 7 HOH *326(H2 O) HELIX 1 AA1 SER A 31 ASP A 34 5 4 HELIX 2 AA2 GLY A 38 GLY A 52 1 15 HELIX 3 AA3 ASN A 76 GLU A 84 1 9 HELIX 4 AA4 THR A 97 GLN A 102 1 6 HELIX 5 AA5 SER A 127 LYS A 133 1 7 HELIX 6 AA6 GLY A 145 SER A 154 1 10 HELIX 7 AA7 ILE A 156 ALA A 169 1 14 HELIX 8 AA8 SER A 177 LYS A 187 1 11 HELIX 9 AA9 SER A 198 GLU A 206 1 9 HELIX 10 AB1 TYR A 233 GLU A 247 1 15 HELIX 11 AB2 GLY A 248 GLU A 260 1 13 HELIX 12 AB3 SER B 31 ASP B 34 5 4 HELIX 13 AB4 GLY B 38 GLY B 52 1 15 HELIX 14 AB5 ASN B 76 GLU B 84 1 9 HELIX 15 AB6 THR B 97 GLN B 102 1 6 HELIX 16 AB7 SER B 127 LYS B 133 1 7 HELIX 17 AB8 GLY B 145 SER B 154 1 10 HELIX 18 AB9 ILE B 156 SER B 168 1 13 HELIX 19 AC1 SER B 177 GLY B 188 1 12 HELIX 20 AC2 SER B 198 GLU B 206 1 9 HELIX 21 AC3 TYR B 233 GLU B 247 1 15 HELIX 22 AC4 GLY B 248 GLU B 260 1 13 SHEET 1 AA1 3 ASN A 54 LEU A 59 0 SHEET 2 AA1 3 THR A 9 THR A 14 1 N LEU A 10 O ASN A 54 SHEET 3 AA1 3 LEU A 89 ALA A 90 1 O LEU A 89 N THR A 13 SHEET 1 AA2 2 MET A 22 ARG A 23 0 SHEET 2 AA2 2 PHE A 36 GLU A 37 -1 O GLU A 37 N MET A 22 SHEET 1 AA3 2 ASP A 105 PHE A 106 0 SHEET 2 AA3 2 ALA A 226 THR A 227 -1 O THR A 227 N ASP A 105 SHEET 1 AA4 2 MET A 111 LEU A 113 0 SHEET 2 AA4 2 LYS A 221 TYR A 223 -1 O LYS A 221 N LEU A 113 SHEET 1 AA5 4 LYS A 138 ALA A 141 0 SHEET 2 AA5 4 TYR A 192 GLU A 197 1 O LEU A 195 N GLY A 140 SHEET 3 AA5 4 VAL A 115 ARG A 120 -1 N LEU A 118 O PHE A 194 SHEET 4 AA5 4 LEU A 211 VAL A 214 -1 O THR A 212 N TYR A 119 SHEET 1 AA6 3 ASN B 54 LEU B 59 0 SHEET 2 AA6 3 THR B 9 THR B 14 1 N VAL B 12 O LYS B 56 SHEET 3 AA6 3 LEU B 89 ALA B 90 1 O LEU B 89 N THR B 13 SHEET 1 AA7 2 MET B 22 ARG B 23 0 SHEET 2 AA7 2 PHE B 36 GLU B 37 -1 O GLU B 37 N MET B 22 SHEET 1 AA8 2 LEU B 68 ASN B 69 0 SHEET 2 AA8 2 GLU B 74 TRP B 75 -1 O GLU B 74 N ASN B 69 SHEET 1 AA9 2 ASP B 105 PHE B 106 0 SHEET 2 AA9 2 ALA B 226 THR B 227 -1 O THR B 227 N ASP B 105 SHEET 1 AB1 2 MET B 111 LEU B 113 0 SHEET 2 AB1 2 LYS B 221 TYR B 223 -1 O LYS B 221 N LEU B 113 SHEET 1 AB2 4 LYS B 138 ALA B 141 0 SHEET 2 AB2 4 TYR B 192 GLU B 197 1 O LEU B 195 N GLY B 140 SHEET 3 AB2 4 VAL B 115 ARG B 120 -1 N LEU B 118 O PHE B 194 SHEET 4 AB2 4 LEU B 211 VAL B 214 -1 O THR B 212 N TYR B 119 CISPEP 1 ASN A 18 PRO A 19 0 -6.19 CISPEP 2 ARG A 170 PRO A 171 0 -1.57 CISPEP 3 ASN B 18 PRO B 19 0 0.21 CISPEP 4 ARG B 170 PRO B 171 0 1.60 SITE 1 AC1 11 TYR A 65 ASP A 93 LEU A 94 THR A 95 SITE 2 AC1 11 ARG A 100 SER A 146 GLU A 197 5OY A 302 SITE 3 AC1 11 HOH A 407 HOH A 415 HOH A 425 SITE 1 AC2 12 TYR A 65 ASP A 93 LEU A 94 THR A 95 SITE 2 AC2 12 ARG A 100 GLY A 145 SER A 146 GLU A 197 SITE 3 AC2 12 2JJ A 301 HOH A 407 HOH A 415 HOH A 425 SITE 1 AC3 11 TYR B 65 ASP B 93 LEU B 94 THR B 95 SITE 2 AC3 11 ARG B 100 LEU B 142 SER B 146 ASN B 178 SITE 3 AC3 11 GLU B 197 5OY B 302 HOH B 481 SITE 1 AC4 12 TYR B 65 ASP B 93 LEU B 94 THR B 95 SITE 2 AC4 12 ARG B 100 LEU B 142 SER B 146 ASN B 178 SITE 3 AC4 12 GLU B 197 TYR B 223 2JJ B 301 HOH B 481 CRYST1 54.700 54.700 147.897 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018282 0.010555 0.000000 0.00000 SCALE2 0.000000 0.021110 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006761 0.00000