HEADER TRANSFERASE 29-OCT-15 5EHV TITLE HUMAN CARBONIC ANHYDRASE II IN COMPLEX WITH LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBONIC ANHYDRASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CARBONATE DEHYDRATASE II,CARBONIC ANHYDRASE C,CAC,CARBONIC COMPND 5 ANHYDRASE II,CA-II; COMPND 6 EC: 4.2.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN CARBONIC ANHYDRASE II, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.REN REVDAT 3 06-MAR-24 5EHV 1 JRNL REMARK LINK REVDAT 2 23-MAR-16 5EHV 1 JRNL REVDAT 1 09-MAR-16 5EHV 0 JRNL AUTH L.A.WOODS,O.DOLEZAL,B.REN,J.H.RYAN,T.S.PEAT,S.A.POULSEN JRNL TITL NATIVE STATE MASS SPECTROMETRY, SURFACE PLASMON RESONANCE, JRNL TITL 2 AND X-RAY CRYSTALLOGRAPHY CORRELATE STRONGLY AS A FRAGMENT JRNL TITL 3 SCREENING COMBINATION. JRNL REF J.MED.CHEM. V. 59 2192 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 26882437 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01940 REMARK 2 REMARK 2 RESOLUTION. 1.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 70559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8081 - 2.9122 0.97 5104 149 0.1473 0.1875 REMARK 3 2 2.9122 - 2.3116 0.98 5092 144 0.1535 0.1517 REMARK 3 3 2.3116 - 2.0194 0.98 5037 146 0.1452 0.1637 REMARK 3 4 2.0194 - 1.8348 0.98 5025 146 0.1422 0.1543 REMARK 3 5 1.8348 - 1.7033 0.97 4958 151 0.1434 0.1693 REMARK 3 6 1.7033 - 1.6028 0.96 4918 140 0.1467 0.1556 REMARK 3 7 1.6028 - 1.5226 0.96 4913 144 0.1501 0.1670 REMARK 3 8 1.5226 - 1.4563 0.96 4856 152 0.1568 0.1781 REMARK 3 9 1.4563 - 1.4002 0.95 4870 134 0.1590 0.1773 REMARK 3 10 1.4002 - 1.3519 0.95 4854 135 0.1685 0.2054 REMARK 3 11 1.3519 - 1.3096 0.94 4799 144 0.1723 0.2123 REMARK 3 12 1.3096 - 1.2722 0.94 4802 130 0.1752 0.1699 REMARK 3 13 1.2722 - 1.2387 0.94 4749 146 0.1955 0.2187 REMARK 3 14 1.2387 - 1.2085 0.90 4595 126 0.2046 0.2414 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2269 REMARK 3 ANGLE : 1.458 3093 REMARK 3 CHIRALITY : 0.070 317 REMARK 3 PLANARITY : 0.009 408 REMARK 3 DIHEDRAL : 14.498 855 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9915 -1.2103 18.5573 REMARK 3 T TENSOR REMARK 3 T11: 0.0467 T22: 0.1220 REMARK 3 T33: 0.1682 T12: 0.0054 REMARK 3 T13: 0.0224 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.6391 L22: 0.4093 REMARK 3 L33: 1.6588 L12: 0.5426 REMARK 3 L13: -1.0373 L23: -0.6578 REMARK 3 S TENSOR REMARK 3 S11: -0.0751 S12: -0.0115 S13: -0.0493 REMARK 3 S21: -0.0162 S22: -0.0243 S23: -0.3471 REMARK 3 S31: 0.0128 S32: 0.2006 S33: 0.0698 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7009 2.9629 17.6021 REMARK 3 T TENSOR REMARK 3 T11: 0.0793 T22: 0.0788 REMARK 3 T33: 0.1051 T12: -0.0135 REMARK 3 T13: -0.0202 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.4140 L22: 1.5967 REMARK 3 L33: 1.9155 L12: -0.7412 REMARK 3 L13: 0.2419 L23: -0.3001 REMARK 3 S TENSOR REMARK 3 S11: -0.0634 S12: -0.0795 S13: 0.1216 REMARK 3 S21: -0.0485 S22: 0.1039 S23: 0.1427 REMARK 3 S31: -0.1978 S32: -0.2631 S33: -0.0663 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4558 -3.2572 18.5725 REMARK 3 T TENSOR REMARK 3 T11: 0.0304 T22: 0.0513 REMARK 3 T33: 0.0518 T12: -0.0152 REMARK 3 T13: -0.0028 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.2081 L22: 1.9034 REMARK 3 L33: 1.4620 L12: -0.3819 REMARK 3 L13: -0.2621 L23: 0.1449 REMARK 3 S TENSOR REMARK 3 S11: -0.0166 S12: -0.0435 S13: 0.0184 REMARK 3 S21: -0.0578 S22: 0.0296 S23: 0.0893 REMARK 3 S31: -0.0114 S32: -0.0066 S33: -0.0050 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1340 3.5258 17.8461 REMARK 3 T TENSOR REMARK 3 T11: 0.0473 T22: 0.0568 REMARK 3 T33: 0.0456 T12: 0.0073 REMARK 3 T13: 0.0011 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.0064 L22: 2.8736 REMARK 3 L33: 1.3853 L12: 0.4433 REMARK 3 L13: 0.1266 L23: 0.7086 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: -0.0258 S13: 0.0761 REMARK 3 S21: -0.1066 S22: -0.0025 S23: 0.0947 REMARK 3 S31: -0.0873 S32: -0.0029 S33: 0.0064 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6060 -3.9382 9.2965 REMARK 3 T TENSOR REMARK 3 T11: 0.0970 T22: 0.0644 REMARK 3 T33: 0.0563 T12: -0.0041 REMARK 3 T13: -0.0098 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.9149 L22: 1.1061 REMARK 3 L33: 0.9932 L12: 0.0744 REMARK 3 L13: -0.0279 L23: 0.2251 REMARK 3 S TENSOR REMARK 3 S11: -0.0288 S12: 0.1439 S13: -0.0221 REMARK 3 S21: -0.2556 S22: 0.0308 S23: 0.0449 REMARK 3 S31: -0.0009 S32: -0.0429 S33: 0.0107 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6198 -5.8739 23.9377 REMARK 3 T TENSOR REMARK 3 T11: 0.0459 T22: 0.0404 REMARK 3 T33: 0.0537 T12: 0.0039 REMARK 3 T13: 0.0045 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 1.7526 L22: 1.7570 REMARK 3 L33: 1.6528 L12: -0.2579 REMARK 3 L13: 0.2994 L23: 0.9809 REMARK 3 S TENSOR REMARK 3 S11: -0.0318 S12: -0.2233 S13: -0.0058 REMARK 3 S21: 0.0602 S22: 0.1262 S23: -0.0626 REMARK 3 S31: 0.0055 S32: 0.1267 S33: -0.1023 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EHV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214941. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.36 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70578 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.208 REMARK 200 RESOLUTION RANGE LOW (A) : 41.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, TRIS-CHLORIDE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.66600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 669 O HOH A 733 1.46 REMARK 500 O HOH A 434 O HOH A 631 1.48 REMARK 500 O HOH A 768 O HOH A 770 1.55 REMARK 500 O HOH A 664 O HOH A 697 1.55 REMARK 500 O HOH A 419 O HOH A 424 1.59 REMARK 500 O HOH A 466 O HOH A 548 1.66 REMARK 500 O HOH A 519 O HOH A 713 1.71 REMARK 500 O HOH A 660 O HOH A 761 1.75 REMARK 500 O HOH A 672 O HOH A 677 1.81 REMARK 500 O HOH A 655 O HOH A 680 1.82 REMARK 500 O HOH A 431 O HOH A 519 1.83 REMARK 500 O HOH A 552 O HOH A 681 1.90 REMARK 500 NZ LYS A 171 O HOH A 401 1.97 REMARK 500 O HOH A 768 O HOH A 773 1.98 REMARK 500 NE2 HIS A 64 O HOH A 402 2.00 REMARK 500 O HOH A 521 O HOH A 705 2.07 REMARK 500 O HOH A 487 O HOH A 758 2.08 REMARK 500 OD1 ASP A 174 O HOH A 403 2.10 REMARK 500 O HOH A 414 O HOH A 691 2.10 REMARK 500 NZ LYS A 171 O HOH A 404 2.10 REMARK 500 O HOH A 554 O HOH A 601 2.11 REMARK 500 OD1 ASP A 34 O HOH A 405 2.13 REMARK 500 O HOH A 598 O HOH A 696 2.14 REMARK 500 O HOH A 472 O HOH A 672 2.14 REMARK 500 O LYS A 76 O HOH A 406 2.15 REMARK 500 O HOH A 413 O HOH A 651 2.16 REMARK 500 O HOH A 420 O HOH A 650 2.16 REMARK 500 O HOH A 405 O HOH A 477 2.17 REMARK 500 O HOH A 431 O HOH A 713 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 417 O HOH A 534 1655 1.53 REMARK 500 O HOH A 414 O HOH A 529 1455 1.98 REMARK 500 O HOH A 419 O HOH A 422 2656 2.14 REMARK 500 O HOH A 704 O HOH A 744 2656 2.18 REMARK 500 O HOH A 490 O HOH A 548 2646 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 27 55.68 -142.94 REMARK 500 LYS A 76 -75.81 -109.72 REMARK 500 GLU A 106 -60.08 -92.65 REMARK 500 LYS A 111 -1.49 73.25 REMARK 500 PHE A 175 58.14 -145.31 REMARK 500 PHE A 175 58.14 -149.06 REMARK 500 ASN A 243 49.72 -94.79 REMARK 500 LYS A 251 -137.29 50.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 775 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A 776 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A 777 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A 778 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A 779 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A 780 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 781 DISTANCE = 7.58 ANGSTROMS REMARK 525 HOH A 782 DISTANCE = 11.27 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 94 NE2 REMARK 620 2 HIS A 96 NE2 106.5 REMARK 620 3 HIS A 119 ND1 112.8 97.9 REMARK 620 4 5ON A 301 O18 100.1 130.6 109.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 422 O REMARK 620 2 HOH A 606 O 91.1 REMARK 620 3 HOH A 689 O 165.9 76.7 REMARK 620 4 HOH A 709 O 122.4 134.9 71.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5ON A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EH5 RELATED DB: PDB REMARK 900 RELATED ID: 5EH7 RELATED DB: PDB REMARK 900 RELATED ID: 5EH8 RELATED DB: PDB REMARK 900 RELATED ID: 5EHW RELATED DB: PDB REMARK 900 RELATED ID: 5FLO RELATED DB: PDB REMARK 900 RELATED ID: 5FLP RELATED DB: PDB REMARK 900 RELATED ID: 5FLQ RELATED DB: PDB REMARK 900 RELATED ID: 5FLR RELATED DB: PDB REMARK 900 RELATED ID: 5FLS RELATED DB: PDB REMARK 900 RELATED ID: 5FLT RELATED DB: PDB REMARK 900 RELATED ID: 5FNG RELATED DB: PDB REMARK 900 RELATED ID: 5FNH RELATED DB: PDB REMARK 900 RELATED ID: 5FNI RELATED DB: PDB REMARK 900 RELATED ID: 5FNJ RELATED DB: PDB REMARK 900 RELATED ID: 5FNK RELATED DB: PDB REMARK 900 RELATED ID: 5FNM RELATED DB: PDB DBREF 5EHV A 1 260 UNP P00918 CAH2_HUMAN 1 260 SEQRES 1 A 260 MET SER HIS HIS TRP GLY TYR GLY LYS HIS ASN GLY PRO SEQRES 2 A 260 GLU HIS TRP HIS LYS ASP PHE PRO ILE ALA LYS GLY GLU SEQRES 3 A 260 ARG GLN SER PRO VAL ASP ILE ASP THR HIS THR ALA LYS SEQRES 4 A 260 TYR ASP PRO SER LEU LYS PRO LEU SER VAL SER TYR ASP SEQRES 5 A 260 GLN ALA THR SER LEU ARG ILE LEU ASN ASN GLY HIS ALA SEQRES 6 A 260 PHE ASN VAL GLU PHE ASP ASP SER GLN ASP LYS ALA VAL SEQRES 7 A 260 LEU LYS GLY GLY PRO LEU ASP GLY THR TYR ARG LEU ILE SEQRES 8 A 260 GLN PHE HIS PHE HIS TRP GLY SER LEU ASP GLY GLN GLY SEQRES 9 A 260 SER GLU HIS THR VAL ASP LYS LYS LYS TYR ALA ALA GLU SEQRES 10 A 260 LEU HIS LEU VAL HIS TRP ASN THR LYS TYR GLY ASP PHE SEQRES 11 A 260 GLY LYS ALA VAL GLN GLN PRO ASP GLY LEU ALA VAL LEU SEQRES 12 A 260 GLY ILE PHE LEU LYS VAL GLY SER ALA LYS PRO GLY LEU SEQRES 13 A 260 GLN LYS VAL VAL ASP VAL LEU ASP SER ILE LYS THR LYS SEQRES 14 A 260 GLY LYS SER ALA ASP PHE THR ASN PHE ASP PRO ARG GLY SEQRES 15 A 260 LEU LEU PRO GLU SER LEU ASP TYR TRP THR TYR PRO GLY SEQRES 16 A 260 SER LEU THR THR PRO PRO LEU LEU GLU CYS VAL THR TRP SEQRES 17 A 260 ILE VAL LEU LYS GLU PRO ILE SER VAL SER SER GLU GLN SEQRES 18 A 260 VAL LEU LYS PHE ARG LYS LEU ASN PHE ASN GLY GLU GLY SEQRES 19 A 260 GLU PRO GLU GLU LEU MET VAL ASP ASN TRP ARG PRO ALA SEQRES 20 A 260 GLN PRO LEU LYS ASN ARG GLN ILE LYS ALA SER PHE LYS HET 5ON A 301 23 HET ZN A 302 1 HET FMT A 303 3 HET GOL A 304 6 HET NA A 305 1 HETNAM 5ON (~{E})-3-[3-[[3-(2-HYDROXY-2-OXOETHYL) HETNAM 2 5ON PHENYL]METHOXY]PHENYL]PROP-2-ENOIC ACID HETNAM ZN ZINC ION HETNAM FMT FORMIC ACID HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 5ON C18 H16 O5 FORMUL 3 ZN ZN 2+ FORMUL 4 FMT C H2 O2 FORMUL 5 GOL C3 H8 O3 FORMUL 6 NA NA 1+ FORMUL 7 HOH *382(H2 O) HELIX 1 AA1 HIS A 15 ASP A 19 5 5 HELIX 2 AA2 PHE A 20 GLY A 25 5 6 HELIX 3 AA3 LYS A 126 GLY A 128 5 3 HELIX 4 AA4 ASP A 129 VAL A 134 1 6 HELIX 5 AA5 LYS A 153 GLY A 155 5 3 HELIX 6 AA6 LEU A 156 LEU A 163 1 8 HELIX 7 AA7 ASP A 164 LYS A 167 5 4 HELIX 8 AA8 ASP A 179 LEU A 184 5 6 HELIX 9 AA9 SER A 218 ARG A 226 1 9 SHEET 1 AA1 2 ASP A 32 ILE A 33 0 SHEET 2 AA1 2 THR A 108 VAL A 109 1 O THR A 108 N ILE A 33 SHEET 1 AA210 LYS A 39 TYR A 40 0 SHEET 2 AA210 LYS A 256 ALA A 257 1 O ALA A 257 N LYS A 39 SHEET 3 AA210 TYR A 190 GLY A 195 -1 N THR A 192 O LYS A 256 SHEET 4 AA210 VAL A 206 LEU A 211 -1 O VAL A 206 N GLY A 195 SHEET 5 AA210 LEU A 140 VAL A 149 1 N GLY A 144 O ILE A 209 SHEET 6 AA210 ALA A 116 ASN A 124 -1 N LEU A 118 O ILE A 145 SHEET 7 AA210 TYR A 88 TRP A 97 -1 N HIS A 94 O HIS A 119 SHEET 8 AA210 PHE A 66 PHE A 70 -1 N VAL A 68 O PHE A 93 SHEET 9 AA210 SER A 56 ASN A 61 -1 N LEU A 57 O GLU A 69 SHEET 10 AA210 SER A 172 ASP A 174 -1 O ALA A 173 N ILE A 59 SHEET 1 AA3 6 LYS A 45 SER A 50 0 SHEET 2 AA3 6 VAL A 78 GLY A 82 -1 O VAL A 78 N SER A 50 SHEET 3 AA3 6 TYR A 88 TRP A 97 -1 O TYR A 88 N LEU A 79 SHEET 4 AA3 6 ALA A 116 ASN A 124 -1 O HIS A 119 N HIS A 94 SHEET 5 AA3 6 LEU A 140 VAL A 149 -1 O ILE A 145 N LEU A 118 SHEET 6 AA3 6 ILE A 215 VAL A 217 1 O ILE A 215 N PHE A 146 LINK NE2 HIS A 94 ZN ZN A 302 1555 1555 2.02 LINK NE2 HIS A 96 ZN ZN A 302 1555 1555 2.03 LINK ND1 HIS A 119 ZN ZN A 302 1555 1555 2.04 LINK O18 5ON A 301 ZN ZN A 302 1555 1555 1.93 LINK NA NA A 305 O HOH A 422 1555 1555 2.29 LINK NA NA A 305 O HOH A 606 1555 1545 2.45 LINK NA NA A 305 O HOH A 689 1555 1555 2.54 LINK NA NA A 305 O HOH A 709 1555 2646 2.52 CISPEP 1 SER A 29 PRO A 30 0 -1.40 CISPEP 2 SER A 29 PRO A 30 0 2.75 CISPEP 3 PRO A 200 PRO A 201 0 10.62 SITE 1 AC1 9 HIS A 94 HIS A 96 HIS A 119 LEU A 197 SITE 2 AC1 9 THR A 198 THR A 199 ZN A 302 HOH A 440 SITE 3 AC1 9 HOH A 488 SITE 1 AC2 4 HIS A 94 HIS A 96 HIS A 119 5ON A 301 SITE 1 AC3 4 TYR A 114 LYS A 148 HOH A 431 HOH A 579 SITE 1 AC4 7 TYR A 7 PRO A 13 ASP A 242 TRP A 244 SITE 2 AC4 7 HOH A 427 HOH A 523 HOH A 617 SITE 1 AC5 5 ASP A 110 LYS A 112 HOH A 422 HOH A 606 SITE 2 AC5 5 HOH A 689 CRYST1 42.139 41.332 72.106 90.00 104.25 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023731 0.000000 0.006029 0.00000 SCALE2 0.000000 0.024194 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014309 0.00000