HEADER TRANSFERASE 29-OCT-15 5EHY
TITLE RAPID DISCOVERY OF PYRIDO[3,4-D]PYRIMIDINE INHIBITORS OF MONOPOLAR
TITLE 2 SPINDLE KINASE 1 (MPS1) USING A STRUCTURE-BASED HYDRIDIZATION
TITLE 3 APPROACH
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE TTK;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: PHOSPHOTYROSINE PICKED THREONINE-PROTEIN KINASE,PYT;
COMPND 5 EC: 2.7.12.1;
COMPND 6 ENGINEERED: YES;
COMPND 7 OTHER_DETAILS: 4-(FURAN-3-YL)-3-PHENYL-1H-PYRAZOLO[4,3-C]PYRIDINE
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: TTK, MPS1, MPS1L1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693
KEYWDS SPINDLE ASSEMBLY CHECKPOINT (SAC), ONCOLOGY TARGET PYRIDO[3, 4-
KEYWDS 2 D]PYRIMIDINE BASED INHIBITORS SELECTIVE AGAINST MPS1, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR P.INNOCENTI,H.L.WOODWARD,S.SOLANKI,N.NAUD,I.M.WESTWOOD,N.CRONIN,
AUTHOR 2 A.HAYES,J.ROBERTS,A.T.HENLEY,R.BAKER,A.FAISAL,G.MAK,G.BOX,M.VALENTI,
AUTHOR 3 A.DE HAVEN BRANDON,L.O'FEE,J.SAVILLE,J.SCHMITT,R.BURKE,R.L.M.VAN
AUTHOR 4 MONTFORT,F.I.RAYMAUD,S.A.ECCLES,S.LINARDOPOULOS,J.BLAGG,S.HOELDER
REVDAT 4 08-MAY-24 5EHY 1 REMARK
REVDAT 3 30-AUG-17 5EHY 1 REMARK
REVDAT 2 11-MAY-16 5EHY 1 JRNL
REVDAT 1 20-APR-16 5EHY 0
JRNL AUTH P.INNOCENTI,H.L.WOODWARD,S.SOLANKI,S.NAUD,I.M.WESTWOOD,
JRNL AUTH 2 N.CRONIN,A.HAYES,J.ROBERTS,A.T.HENLEY,R.BAKER,A.FAISAL,
JRNL AUTH 3 G.W.MAK,G.BOX,M.VALENTI,A.DE HAVEN BRANDON,L.O'FEE,
JRNL AUTH 4 H.SAVILLE,J.SCHMITT,B.MATIJSSEN,R.BURKE,R.L.VAN MONTFORT,
JRNL AUTH 5 F.I.RAYNAUD,S.A.ECCLES,S.LINARDOPOULOS,J.BLAGG,S.HOELDER
JRNL TITL RAPID DISCOVERY OF PYRIDO[3,4-D]PYRIMIDINE INHIBITORS OF
JRNL TITL 2 MONOPOLAR SPINDLE KINASE 1 (MPS1) USING A STRUCTURE-BASED
JRNL TITL 3 HYBRIDIZATION APPROACH.
JRNL REF J.MED.CHEM. V. 59 3671 2016
JRNL REFN ISSN 0022-2623
JRNL PMID 27055065
JRNL DOI 10.1021/ACS.JMEDCHEM.5B01811
REMARK 2
REMARK 2 RESOLUTION. 2.26 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.2
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.20
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 3 NUMBER OF REFLECTIONS : 21324
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.187
REMARK 3 R VALUE (WORKING SET) : 0.185
REMARK 3 FREE R VALUE : 0.207
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020
REMARK 3 FREE R VALUE TEST SET COUNT : 1071
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 11
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.37
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.55
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2757
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2349
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2620
REMARK 3 BIN R VALUE (WORKING SET) : 0.2350
REMARK 3 BIN FREE R VALUE : 0.2337
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.97
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 137
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2020
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 117
REMARK 3 SOLVENT ATOMS : 46
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 59.99
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.41
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 10.68280
REMARK 3 B22 (A**2) : -0.81090
REMARK 3 B33 (A**2) : -9.87190
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.332
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.173
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.148
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.174
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.150
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 2172 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 2907 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 766 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 55 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 317 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 2172 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 280 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 2465 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.13
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.86
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.17
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 5
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: {A|515 - 561}
REMARK 3 ORIGIN FOR THE GROUP (A): 45.7987 119.9920 134.4420
REMARK 3 T TENSOR
REMARK 3 T11: -0.1236 T22: -0.1569
REMARK 3 T33: 0.1030 T12: 0.0036
REMARK 3 T13: -0.0242 T23: -0.1500
REMARK 3 L TENSOR
REMARK 3 L11: 8.3155 L22: 7.1074
REMARK 3 L33: 3.5494 L12: 2.8739
REMARK 3 L13: -1.4465 L23: -0.1161
REMARK 3 S TENSOR
REMARK 3 S11: 0.0200 S12: 0.5442 S13: -0.5442
REMARK 3 S21: -0.2975 S22: 0.2078 S23: -0.2407
REMARK 3 S31: 0.4681 S32: 0.4694 S33: -0.2278
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: {A|562 - 662}
REMARK 3 ORIGIN FOR THE GROUP (A): 32.7526 131.5900 135.4490
REMARK 3 T TENSOR
REMARK 3 T11: -0.1725 T22: -0.1469
REMARK 3 T33: 0.0341 T12: -0.0278
REMARK 3 T13: 0.0249 T23: -0.0587
REMARK 3 L TENSOR
REMARK 3 L11: 6.4295 L22: 1.7217
REMARK 3 L33: 1.7712 L12: -2.5846
REMARK 3 L13: 1.5593 L23: 0.3704
REMARK 3 S TENSOR
REMARK 3 S11: 0.1204 S12: 0.1580 S13: -0.5118
REMARK 3 S21: -0.0652 S22: -0.0666 S23: 0.0836
REMARK 3 S31: 0.0859 S32: -0.1282 S33: -0.0538
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: {A|663 - 712}
REMARK 3 ORIGIN FOR THE GROUP (A): 33.8413 143.6310 125.8630
REMARK 3 T TENSOR
REMARK 3 T11: -0.0992 T22: 0.0679
REMARK 3 T33: 0.1106 T12: 0.0194
REMARK 3 T13: 0.0381 T23: 0.0299
REMARK 3 L TENSOR
REMARK 3 L11: 1.3477 L22: 0.0000
REMARK 3 L33: 4.0773 L12: 0.3848
REMARK 3 L13: 2.3142 L23: -1.0814
REMARK 3 S TENSOR
REMARK 3 S11: 0.0118 S12: 0.4296 S13: -0.0041
REMARK 3 S21: -0.1170 S22: 0.0397 S23: -0.2742
REMARK 3 S31: -0.0330 S32: 0.1050 S33: -0.0515
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: {A|713 - 781}
REMARK 3 ORIGIN FOR THE GROUP (A): 19.8410 144.2210 121.3290
REMARK 3 T TENSOR
REMARK 3 T11: -0.1445 T22: 0.0104
REMARK 3 T33: -0.0174 T12: 0.1042
REMARK 3 T13: -0.0860 T23: -0.0177
REMARK 3 L TENSOR
REMARK 3 L11: 2.8588 L22: 2.7422
REMARK 3 L33: 5.4459 L12: 0.2520
REMARK 3 L13: 0.2622 L23: 0.3453
REMARK 3 S TENSOR
REMARK 3 S11: -0.0044 S12: 0.5442 S13: 0.3198
REMARK 3 S21: -0.5442 S22: -0.2398 S23: 0.2479
REMARK 3 S31: -0.4607 S32: -0.5398 S33: 0.2442
REMARK 3
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: {A|782 - 794}
REMARK 3 ORIGIN FOR THE GROUP (A): 13.2077 139.9510 137.3250
REMARK 3 T TENSOR
REMARK 3 T11: -0.2116 T22: -0.0181
REMARK 3 T33: 0.1821 T12: 0.0117
REMARK 3 T13: -0.0378 T23: -0.1130
REMARK 3 L TENSOR
REMARK 3 L11: 1.5258 L22: 0.0000
REMARK 3 L33: 0.0477 L12: -0.3398
REMARK 3 L13: -2.8103 L23: 2.9081
REMARK 3 S TENSOR
REMARK 3 S11: -0.0067 S12: 0.0941 S13: 0.0225
REMARK 3 S21: 0.0163 S22: -0.0744 S23: 0.0722
REMARK 3 S31: -0.0007 S32: -0.1049 S33: 0.0811
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5EHY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-OCT-15.
REMARK 100 THE DEPOSITION ID IS D_1000214948.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 04-AUG-10
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : NULL
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I04
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21345
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260
REMARK 200 RESOLUTION RANGE LOW (A) : 41.150
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 200 DATA REDUNDANCY : 4.300
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 60.42
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5 30-45% PEG300, VAPOR
REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X,Y,-Z
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z+1/2
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.30800
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.72650
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.84700
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.30800
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.72650
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.84700
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.30800
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.72650
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.84700
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.30800
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.72650
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.84700
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 3250 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 12930 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 10.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 496
REMARK 465 HIS A 497
REMARK 465 HIS A 498
REMARK 465 HIS A 499
REMARK 465 HIS A 500
REMARK 465 HIS A 501
REMARK 465 HIS A 502
REMARK 465 SER A 503
REMARK 465 SER A 504
REMARK 465 GLY A 505
REMARK 465 VAL A 506
REMARK 465 ASP A 507
REMARK 465 LEU A 508
REMARK 465 GLY A 509
REMARK 465 THR A 510
REMARK 465 GLU A 511
REMARK 465 ASN A 512
REMARK 465 LEU A 513
REMARK 465 TYR A 514
REMARK 465 MET A 671
REMARK 465 GLN A 672
REMARK 465 PRO A 673
REMARK 465 ASP A 674
REMARK 465 THR A 675
REMARK 465 THR A 676
REMARK 465 SER A 677
REMARK 465 VAL A 678
REMARK 465 VAL A 679
REMARK 465 LYS A 680
REMARK 465 ASP A 681
REMARK 465 SER A 682
REMARK 465 GLN A 683
REMARK 465 SER A 699
REMARK 465 SER A 700
REMARK 465 SER A 701
REMARK 465 ARG A 702
REMARK 465 GLU A 703
REMARK 465 ASN A 704
REMARK 465 GLY A 705
REMARK 465 LYS A 706
REMARK 465 SER A 707
REMARK 465 LYS A 708
REMARK 465 SER A 709
REMARK 465 LYS A 710
REMARK 465 THR A 795
REMARK 465 HIS A 796
REMARK 465 PRO A 797
REMARK 465 VAL A 798
REMARK 465 ASN A 799
REMARK 465 GLN A 800
REMARK 465 MET A 801
REMARK 465 ALA A 802
REMARK 465 LYS A 803
REMARK 465 GLY A 804
REMARK 465 THR A 805
REMARK 465 THR A 806
REMARK 465 GLU A 807
REMARK 465 GLU A 808
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 PHE A 515 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 GLN A 516 CG CD OE1 NE2
REMARK 470 ARG A 523 CZ NH1 NH2
REMARK 470 LYS A 529 CE NZ
REMARK 470 LYS A 538 CE NZ
REMARK 470 LYS A 546 CG CD CE NZ
REMARK 470 GLU A 559 CD OE1 OE2
REMARK 470 GLN A 563 CD OE1 NE2
REMARK 470 LYS A 577 CE NZ
REMARK 470 LYS A 614 CD CE NZ
REMARK 470 LYS A 615 CD CE NZ
REMARK 470 LYS A 617 CG CD CE NZ
REMARK 470 SER A 618 OG
REMARK 470 GLN A 670 CG CD OE1 NE2
REMARK 470 VAL A 684 CG1 CG2
REMARK 470 LYS A 696 CD CE NZ
REMARK 470 MET A 698 CG SD CE
REMARK 470 GLU A 755 CG CD OE1 OE2
REMARK 470 LYS A 762 CG CD CE NZ
REMARK 470 LYS A 773 CE NZ
REMARK 470 LYS A 777 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LYS A 617 -66.55 -91.37
REMARK 500 SER A 646 -2.80 72.61
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 7PE A 901
REMARK 610 7PE A 902
REMARK 610 7PE A 903
REMARK 610 7PE A 904
REMARK 610 7PE A 905
REMARK 610 7PE A 906
REMARK 610 7PE A 907
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 7PE A 901
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 7PE A 902
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 7PE A 903
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 7PE A 904
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 7PE A 905
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 7PE A 906
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 7PE A 907
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 5O4 A 908
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 909
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 910
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 911
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 912
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 913
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 914
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 5EH0 RELATED DB: PDB
REMARK 900 5EH0 CONTAINS THE SAME PROTEIN COMPLEXED WITH N2-(2-METHOXY-4-(1-
REMARK 900 METHYL-1H-PYRAZOL-4-YL)PHENYL)-N8-NEOPENTYLPYRIDO[3,4-D]PYRIMIDINE-
REMARK 900 2,8-DIAMINE
DBREF 5EHY A 519 808 UNP P33981 TTK_HUMAN 519 808
SEQADV 5EHY MET A 496 UNP P33981 INITIATING METHIONINE
SEQADV 5EHY HIS A 497 UNP P33981 EXPRESSION TAG
SEQADV 5EHY HIS A 498 UNP P33981 EXPRESSION TAG
SEQADV 5EHY HIS A 499 UNP P33981 EXPRESSION TAG
SEQADV 5EHY HIS A 500 UNP P33981 EXPRESSION TAG
SEQADV 5EHY HIS A 501 UNP P33981 EXPRESSION TAG
SEQADV 5EHY HIS A 502 UNP P33981 EXPRESSION TAG
SEQADV 5EHY SER A 503 UNP P33981 EXPRESSION TAG
SEQADV 5EHY SER A 504 UNP P33981 EXPRESSION TAG
SEQADV 5EHY GLY A 505 UNP P33981 EXPRESSION TAG
SEQADV 5EHY VAL A 506 UNP P33981 EXPRESSION TAG
SEQADV 5EHY ASP A 507 UNP P33981 EXPRESSION TAG
SEQADV 5EHY LEU A 508 UNP P33981 EXPRESSION TAG
SEQADV 5EHY GLY A 509 UNP P33981 EXPRESSION TAG
SEQADV 5EHY THR A 510 UNP P33981 EXPRESSION TAG
SEQADV 5EHY GLU A 511 UNP P33981 EXPRESSION TAG
SEQADV 5EHY ASN A 512 UNP P33981 EXPRESSION TAG
SEQADV 5EHY LEU A 513 UNP P33981 EXPRESSION TAG
SEQADV 5EHY TYR A 514 UNP P33981 EXPRESSION TAG
SEQADV 5EHY PHE A 515 UNP P33981 EXPRESSION TAG
SEQADV 5EHY GLN A 516 UNP P33981 EXPRESSION TAG
SEQADV 5EHY SER A 517 UNP P33981 EXPRESSION TAG
SEQADV 5EHY MET A 518 UNP P33981 EXPRESSION TAG
SEQRES 1 A 313 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU
SEQRES 2 A 313 GLY THR GLU ASN LEU TYR PHE GLN SER MET SER VAL LYS
SEQRES 3 A 313 GLY ARG ILE TYR SER ILE LEU LYS GLN ILE GLY SER GLY
SEQRES 4 A 313 GLY SER SER LYS VAL PHE GLN VAL LEU ASN GLU LYS LYS
SEQRES 5 A 313 GLN ILE TYR ALA ILE LYS TYR VAL ASN LEU GLU GLU ALA
SEQRES 6 A 313 ASP ASN GLN THR LEU ASP SER TYR ARG ASN GLU ILE ALA
SEQRES 7 A 313 TYR LEU ASN LYS LEU GLN GLN HIS SER ASP LYS ILE ILE
SEQRES 8 A 313 ARG LEU TYR ASP TYR GLU ILE THR ASP GLN TYR ILE TYR
SEQRES 9 A 313 MET VAL MET GLU CYS GLY ASN ILE ASP LEU ASN SER TRP
SEQRES 10 A 313 LEU LYS LYS LYS LYS SER ILE ASP PRO TRP GLU ARG LYS
SEQRES 11 A 313 SER TYR TRP LYS ASN MET LEU GLU ALA VAL HIS THR ILE
SEQRES 12 A 313 HIS GLN HIS GLY ILE VAL HIS SER ASP LEU LYS PRO ALA
SEQRES 13 A 313 ASN PHE LEU ILE VAL ASP GLY MET LEU LYS LEU ILE ASP
SEQRES 14 A 313 PHE GLY ILE ALA ASN GLN MET GLN PRO ASP THR THR SER
SEQRES 15 A 313 VAL VAL LYS ASP SER GLN VAL GLY THR VAL ASN TYR MET
SEQRES 16 A 313 PRO PRO GLU ALA ILE LYS ASP MET SER SER SER ARG GLU
SEQRES 17 A 313 ASN GLY LYS SER LYS SER LYS ILE SER PRO LYS SER ASP
SEQRES 18 A 313 VAL TRP SER LEU GLY CYS ILE LEU TYR TYR MET THR TYR
SEQRES 19 A 313 GLY LYS THR PRO PHE GLN GLN ILE ILE ASN GLN ILE SER
SEQRES 20 A 313 LYS LEU HIS ALA ILE ILE ASP PRO ASN HIS GLU ILE GLU
SEQRES 21 A 313 PHE PRO ASP ILE PRO GLU LYS ASP LEU GLN ASP VAL LEU
SEQRES 22 A 313 LYS CYS CYS LEU LYS ARG ASP PRO LYS GLN ARG ILE SER
SEQRES 23 A 313 ILE PRO GLU LEU LEU ALA HIS PRO TYR VAL GLN ILE GLN
SEQRES 24 A 313 THR HIS PRO VAL ASN GLN MET ALA LYS GLY THR THR GLU
SEQRES 25 A 313 GLU
HET 7PE A 901 10
HET 7PE A 902 7
HET 7PE A 903 7
HET 7PE A 904 10
HET 7PE A 905 7
HET 7PE A 906 16
HET 7PE A 907 16
HET 5O4 A 908 20
HET EDO A 909 4
HET DMS A 910 4
HET EDO A 911 4
HET EDO A 912 4
HET EDO A 913 4
HET EDO A 914 4
HETNAM 7PE 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)
HETNAM 2 7PE ETHOXY)ETHANOL
HETNAM 5O4 4-(FURAN-3-YL)-3-PHENYL-2~{H}-PYRAZOLO[4,3-C]PYRIDINE
HETNAM EDO 1,2-ETHANEDIOL
HETNAM DMS DIMETHYL SULFOXIDE
HETSYN 7PE POLYETHYLENE GLYCOL FRAGMENT
HETSYN EDO ETHYLENE GLYCOL
FORMUL 2 7PE 7(C14 H30 O7)
FORMUL 9 5O4 C16 H11 N3 O
FORMUL 10 EDO 5(C2 H6 O2)
FORMUL 11 DMS C2 H6 O S
FORMUL 16 HOH *46(H2 O)
HELIX 1 AA1 ASP A 561 LEU A 578 1 18
HELIX 2 AA2 LEU A 609 LYS A 616 1 8
HELIX 3 AA3 ASP A 620 HIS A 641 1 22
HELIX 4 AA4 LYS A 649 ALA A 651 5 3
HELIX 5 AA5 PRO A 691 ASP A 697 1 7
HELIX 6 AA6 SER A 712 GLY A 730 1 19
HELIX 7 AA7 ASN A 739 ILE A 748 1 10
HELIX 8 AA8 GLU A 761 LEU A 772 1 12
HELIX 9 AA9 SER A 781 ALA A 787 1 7
HELIX 10 AB1 HIS A 788 ILE A 793 1 6
SHEET 1 AA1 6 SER A 517 VAL A 520 0
SHEET 2 AA1 6 ARG A 523 SER A 533 -1 O TYR A 525 N MET A 518
SHEET 3 AA1 6 SER A 537 LEU A 543 -1 O LEU A 543 N SER A 526
SHEET 4 AA1 6 ILE A 549 ASN A 556 -1 O TYR A 554 N LYS A 538
SHEET 5 AA1 6 TYR A 597 MET A 602 -1 O MET A 602 N ALA A 551
SHEET 6 AA1 6 LEU A 588 ILE A 593 -1 N ASP A 590 O VAL A 601
SHEET 1 AA2 3 ILE A 607 ASP A 608 0
SHEET 2 AA2 3 PHE A 653 VAL A 656 -1 O ILE A 655 N ILE A 607
SHEET 3 AA2 3 MET A 659 LEU A 662 -1 O LYS A 661 N LEU A 654
SITE 1 AC1 6 ASN A 576 LYS A 577 ASP A 763 PRO A 789
SITE 2 AC1 6 EDO A 913 HOH A1008
SITE 1 AC2 6 LYS A 546 GLN A 548 ILE A 549 TYR A 550
SITE 2 AC2 6 TYR A 589 CYS A 604
SITE 1 AC3 7 LEU A 613 LYS A 616 LYS A 617 TYR A 726
SITE 2 AC3 7 MET A 727 THR A 728 GLY A 730
SITE 1 AC4 4 LYS A 521 GLU A 592 GLN A 778 HOH A1027
SITE 1 AC5 3 ASN A 570 GLY A 642 GLN A 794
SITE 1 AC6 9 TRP A 622 LYS A 625 SER A 626 LYS A 629
SITE 2 AC6 9 VAL A 791 GLN A 792 ILE A 793 GLN A 794
SITE 3 AC6 9 EDO A 911
SITE 1 AC7 8 LYS A 553 VAL A 555 TYR A 568 GLU A 571
SITE 2 AC7 8 ILE A 572 MET A 600 ILE A 663 5O4 A 908
SITE 1 AC8 7 ILE A 531 ALA A 551 ILE A 586 GLU A 603
SITE 2 AC8 7 GLY A 605 LEU A 654 7PE A 907
SITE 1 AC9 3 GLN A 541 GLY A 605 ASN A 606
SITE 1 AD1 5 GLN A 579 GLN A 580 SER A 582 ASP A 583
SITE 2 AD1 5 ARG A 587
SITE 1 AD2 3 ASP A 566 GLN A 792 7PE A 906
SITE 1 AD3 6 ASP A 595 HIS A 639 PRO A 713 ILE A 782
SITE 2 AD3 6 PRO A 783 HOH A1004
SITE 1 AD4 5 ASN A 576 LEU A 588 TYR A 589 TYR A 591
SITE 2 AD4 5 7PE A 901
SITE 1 AD5 2 TYR A 525 TYR A 550
CRYST1 70.616 111.453 113.694 90.00 90.00 90.00 I 2 2 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014161 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008972 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008796 0.00000