HEADER TRANSFERASE 29-OCT-15 5EIF TITLE DENGUE 3 NS5 METHYLTRANSFERASE BOUND TO S-ADENOSYL METHIONINE AND TITLE 2 FRAGMENT NB2C3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 EC: 3.4.21.91,3.6.1.15,3.6.4.13,2.1.1.56,2.1.1.57,2.7.7.48; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS TYPE 3; SOURCE 3 ORGANISM_COMMON: DENV-3; SOURCE 4 ORGANISM_TAXID: 408870; SOURCE 5 STRAIN: PHILIPPINES/H87/1956; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCOX20A KEYWDS TRANSFERASE, DENGUE VIRUS, NS5 METHYLTRANSFERASE, FRAGMENT-BASED DRUG KEYWDS 2 DISCOVERY EXPDTA X-RAY DIFFRACTION AUTHOR K.BARRAL,G.BRICOGNE,A.SHARFF REVDAT 3 10-JAN-24 5EIF 1 REMARK REVDAT 2 06-SEP-17 5EIF 1 REMARK REVDAT 1 26-OCT-16 5EIF 0 JRNL AUTH F.BENMANSOUR,I.TRIST,B.COUTARD,E.DECROLY,G.QUERAT, JRNL AUTH 2 A.BRANCALE,K.BARRAL JRNL TITL DISCOVERY OF NOVEL DENGUE VIRUS NS5 METHYLTRANSFERASE JRNL TITL 2 NON-NUCLEOSIDE INHIBITORS BY FRAGMENT-BASED DRUG DESIGN. JRNL REF EUR.J.MED.CHEM. V. 125 865 2016 JRNL REFN ISSN 0223-5234 JRNL PMID 27750202 JRNL DOI 10.1016/J.EJMECH.2016.10.007 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 92055 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 4676 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.54 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.32 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 6582 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2158 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6235 REMARK 3 BIN R VALUE (WORKING SET) : 0.2141 REMARK 3 BIN FREE R VALUE : 0.2468 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.27 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 347 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4065 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 734 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.01620 REMARK 3 B22 (A**2) : -2.67360 REMARK 3 B33 (A**2) : 1.65740 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.173 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.070 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.070 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.064 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.065 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4292 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5802 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1562 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 95 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 654 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4292 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 538 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5674 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.60 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.25 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 40.1357 41.6443 -1.9980 REMARK 3 T TENSOR REMARK 3 T11: -0.0606 T22: 0.0086 REMARK 3 T33: -0.0116 T12: 0.0051 REMARK 3 T13: 0.0021 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 0.3648 L22: 0.2154 REMARK 3 L33: 0.6033 L12: 0.0476 REMARK 3 L13: 0.0568 L23: 0.1713 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: 0.0019 S13: -0.0166 REMARK 3 S21: 0.0079 S22: -0.0030 S23: 0.0112 REMARK 3 S31: 0.0149 S32: 0.0061 S33: -0.0012 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 14.0991 13.2186 -11.5924 REMARK 3 T TENSOR REMARK 3 T11: -0.0302 T22: -0.0503 REMARK 3 T33: -0.0314 T12: -0.0112 REMARK 3 T13: -0.0139 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.4541 L22: 0.3843 REMARK 3 L33: 1.3716 L12: 0.0010 REMARK 3 L13: 0.0942 L23: -0.1068 REMARK 3 S TENSOR REMARK 3 S11: 0.0295 S12: -0.0324 S13: -0.0406 REMARK 3 S21: -0.0146 S22: 0.0200 S23: -0.0121 REMARK 3 S31: 0.1190 S32: -0.0603 S33: -0.0495 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EIF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214962. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS (VERSION DECEMBER 6 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92363 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.499 REMARK 200 RESOLUTION RANGE LOW (A) : 50.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3P97 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 8000 100MM TRIS 200MM NACL REMARK 280 20MM TRISODIUM CITRATE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.46000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 92.43500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.46000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 92.43500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 GLN A 5 REMARK 465 GLY A 6 REMARK 465 HIS A 263 REMARK 465 VAL A 264 REMARK 465 ASN A 265 REMARK 465 ALA A 266 REMARK 465 GLU A 267 REMARK 465 PRO A 268 REMARK 465 GLU A 269 REMARK 465 THR A 270 REMARK 465 PRO A 271 REMARK 465 ASN A 272 REMARK 465 MET A 273 REMARK 465 ASP A 274 REMARK 465 VAL A 275 REMARK 465 ILE A 276 REMARK 465 GLY C 1 REMARK 465 THR C 2 REMARK 465 GLY C 3 REMARK 465 SER C 4 REMARK 465 GLN C 5 REMARK 465 GLY C 6 REMARK 465 HIS C 263 REMARK 465 VAL C 264 REMARK 465 ASN C 265 REMARK 465 ALA C 266 REMARK 465 GLU C 267 REMARK 465 PRO C 268 REMARK 465 GLU C 269 REMARK 465 THR C 270 REMARK 465 PRO C 271 REMARK 465 ASN C 272 REMARK 465 MET C 273 REMARK 465 ASP C 274 REMARK 465 VAL C 275 REMARK 465 ILE C 276 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 95 CD CE NZ REMARK 470 LYS A 139 CD CE NZ REMARK 470 ARG C 22 CD NE CZ NH1 NH2 REMARK 470 LYS C 139 CD CE NZ REMARK 470 ARG C 248 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 127 SD MET A 127 CE -0.421 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 52 -48.74 70.64 REMARK 500 HIS C 52 -48.19 67.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 803 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 804 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A 805 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A 806 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH C4427 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH C4428 DISTANCE = 6.73 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4M0 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM C 4000 DBREF 5EIF A 1 276 UNP P27915 POLG_DEN3P 2491 2766 DBREF 5EIF C 1 276 UNP P27915 POLG_DEN3P 2491 2766 SEQADV 5EIF THR A 50 UNP P27915 ILE 2540 CONFLICT SEQADV 5EIF THR C 50 UNP P27915 ILE 2540 CONFLICT SEQRES 1 A 276 GLY THR GLY SER GLN GLY GLU THR LEU GLY GLU LYS TRP SEQRES 2 A 276 LYS LYS LYS LEU ASN GLN LEU SER ARG LYS GLU PHE ASP SEQRES 3 A 276 LEU TYR LYS LYS SER GLY ILE THR GLU VAL ASP ARG THR SEQRES 4 A 276 GLU ALA LYS GLU GLY LEU LYS ARG GLY GLU THR THR HIS SEQRES 5 A 276 HIS ALA VAL SER ARG GLY SER ALA LYS LEU GLN TRP PHE SEQRES 6 A 276 VAL GLU ARG ASN MET VAL ILE PRO GLU GLY ARG VAL ILE SEQRES 7 A 276 ASP LEU GLY CYS GLY ARG GLY GLY TRP SER TYR TYR CYS SEQRES 8 A 276 ALA GLY LEU LYS LYS VAL THR GLU VAL ARG GLY TYR THR SEQRES 9 A 276 LYS GLY GLY PRO GLY HIS GLU GLU PRO VAL PRO MET SER SEQRES 10 A 276 THR TYR GLY TRP ASN ILE VAL LYS LEU MET SER GLY LYS SEQRES 11 A 276 ASP VAL PHE TYR LEU PRO PRO GLU LYS CYS ASP THR LEU SEQRES 12 A 276 LEU CYS ASP ILE GLY GLU SER SER PRO SER PRO THR VAL SEQRES 13 A 276 GLU GLU SER ARG THR ILE ARG VAL LEU LYS MET VAL GLU SEQRES 14 A 276 PRO TRP LEU LYS ASN ASN GLN PHE CYS ILE LYS VAL LEU SEQRES 15 A 276 ASN PRO TYR MET PRO THR VAL ILE GLU HIS LEU GLU ARG SEQRES 16 A 276 LEU GLN ARG LYS HIS GLY GLY MET LEU VAL ARG ASN PRO SEQRES 17 A 276 LEU SER ARG ASN SER THR HIS GLU MET TYR TRP ILE SER SEQRES 18 A 276 ASN GLY THR GLY ASN ILE VAL SER SER VAL ASN MET VAL SEQRES 19 A 276 SER ARG LEU LEU LEU ASN ARG PHE THR MET THR HIS ARG SEQRES 20 A 276 ARG PRO THR ILE GLU LYS ASP VAL ASP LEU GLY ALA GLY SEQRES 21 A 276 THR ARG HIS VAL ASN ALA GLU PRO GLU THR PRO ASN MET SEQRES 22 A 276 ASP VAL ILE SEQRES 1 C 276 GLY THR GLY SER GLN GLY GLU THR LEU GLY GLU LYS TRP SEQRES 2 C 276 LYS LYS LYS LEU ASN GLN LEU SER ARG LYS GLU PHE ASP SEQRES 3 C 276 LEU TYR LYS LYS SER GLY ILE THR GLU VAL ASP ARG THR SEQRES 4 C 276 GLU ALA LYS GLU GLY LEU LYS ARG GLY GLU THR THR HIS SEQRES 5 C 276 HIS ALA VAL SER ARG GLY SER ALA LYS LEU GLN TRP PHE SEQRES 6 C 276 VAL GLU ARG ASN MET VAL ILE PRO GLU GLY ARG VAL ILE SEQRES 7 C 276 ASP LEU GLY CYS GLY ARG GLY GLY TRP SER TYR TYR CYS SEQRES 8 C 276 ALA GLY LEU LYS LYS VAL THR GLU VAL ARG GLY TYR THR SEQRES 9 C 276 LYS GLY GLY PRO GLY HIS GLU GLU PRO VAL PRO MET SER SEQRES 10 C 276 THR TYR GLY TRP ASN ILE VAL LYS LEU MET SER GLY LYS SEQRES 11 C 276 ASP VAL PHE TYR LEU PRO PRO GLU LYS CYS ASP THR LEU SEQRES 12 C 276 LEU CYS ASP ILE GLY GLU SER SER PRO SER PRO THR VAL SEQRES 13 C 276 GLU GLU SER ARG THR ILE ARG VAL LEU LYS MET VAL GLU SEQRES 14 C 276 PRO TRP LEU LYS ASN ASN GLN PHE CYS ILE LYS VAL LEU SEQRES 15 C 276 ASN PRO TYR MET PRO THR VAL ILE GLU HIS LEU GLU ARG SEQRES 16 C 276 LEU GLN ARG LYS HIS GLY GLY MET LEU VAL ARG ASN PRO SEQRES 17 C 276 LEU SER ARG ASN SER THR HIS GLU MET TYR TRP ILE SER SEQRES 18 C 276 ASN GLY THR GLY ASN ILE VAL SER SER VAL ASN MET VAL SEQRES 19 C 276 SER ARG LEU LEU LEU ASN ARG PHE THR MET THR HIS ARG SEQRES 20 C 276 ARG PRO THR ILE GLU LYS ASP VAL ASP LEU GLY ALA GLY SEQRES 21 C 276 THR ARG HIS VAL ASN ALA GLU PRO GLU THR PRO ASN MET SEQRES 22 C 276 ASP VAL ILE HET SAM A 301 27 HET 4M0 A 302 11 HET SAM C4000 27 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM 4M0 2-AZANYL-4-METHYL-BENZOIC ACID HETSYN 4M0 4-METHYLANTHRANILATE FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 4 4M0 C8 H9 N O2 FORMUL 6 HOH *734(H2 O) HELIX 1 AA1 THR A 8 LEU A 20 1 13 HELIX 2 AA2 SER A 21 LYS A 30 1 10 HELIX 3 AA3 ARG A 38 ARG A 47 1 10 HELIX 4 AA4 ARG A 57 GLU A 67 1 11 HELIX 5 AA5 GLY A 85 ALA A 92 1 8 HELIX 6 AA6 GLY A 120 ASN A 122 5 3 HELIX 7 AA7 ASP A 131 LEU A 135 5 5 HELIX 8 AA8 SER A 153 GLU A 169 1 17 HELIX 9 AA9 PRO A 170 LEU A 172 5 3 HELIX 10 AB1 MET A 186 GLY A 201 1 16 HELIX 11 AB2 ASN A 226 ARG A 241 1 16 HELIX 12 AB3 THR C 8 GLN C 19 1 12 HELIX 13 AB4 SER C 21 LYS C 30 1 10 HELIX 14 AB5 ARG C 38 ARG C 47 1 10 HELIX 15 AB6 ARG C 57 GLU C 67 1 11 HELIX 16 AB7 GLY C 85 ALA C 92 1 8 HELIX 17 AB8 GLY C 120 ASN C 122 5 3 HELIX 18 AB9 ASP C 131 LEU C 135 5 5 HELIX 19 AC1 SER C 153 GLU C 169 1 17 HELIX 20 AC2 PRO C 170 LEU C 172 5 3 HELIX 21 AC3 MET C 186 GLY C 201 1 16 HELIX 22 AC4 ASN C 226 MET C 244 1 19 SHEET 1 AA1 2 THR A 34 ASP A 37 0 SHEET 2 AA1 2 THR A 250 LYS A 253 1 O THR A 250 N GLU A 35 SHEET 1 AA2 7 VAL A 124 MET A 127 0 SHEET 2 AA2 7 VAL A 97 TYR A 103 1 N GLY A 102 O MET A 127 SHEET 3 AA2 7 GLY A 75 LEU A 80 1 N VAL A 77 O GLU A 99 SHEET 4 AA2 7 THR A 142 CYS A 145 1 O LEU A 144 N LEU A 80 SHEET 5 AA2 7 GLN A 176 VAL A 181 1 O GLN A 176 N LEU A 143 SHEET 6 AA2 7 MET A 217 ILE A 220 -1 O MET A 217 N VAL A 181 SHEET 7 AA2 7 MET A 203 VAL A 205 -1 N MET A 203 O ILE A 220 SHEET 1 AA3 2 THR C 34 ASP C 37 0 SHEET 2 AA3 2 THR C 250 LYS C 253 1 O THR C 250 N GLU C 35 SHEET 1 AA4 7 VAL C 124 MET C 127 0 SHEET 2 AA4 7 VAL C 97 TYR C 103 1 N GLY C 102 O MET C 127 SHEET 3 AA4 7 GLY C 75 LEU C 80 1 N VAL C 77 O GLU C 99 SHEET 4 AA4 7 THR C 142 CYS C 145 1 O LEU C 144 N LEU C 80 SHEET 5 AA4 7 GLN C 176 VAL C 181 1 O LYS C 180 N CYS C 145 SHEET 6 AA4 7 MET C 217 ILE C 220 -1 O MET C 217 N VAL C 181 SHEET 7 AA4 7 MET C 203 VAL C 205 -1 N VAL C 205 O TYR C 218 SITE 1 AC1 20 SER A 56 GLY A 58 GLY A 81 CYS A 82 SITE 2 AC1 20 GLY A 83 GLY A 86 TRP A 87 THR A 104 SITE 3 AC1 20 LYS A 105 HIS A 110 GLU A 111 LYS A 130 SITE 4 AC1 20 ASP A 131 VAL A 132 PHE A 133 ASP A 146 SITE 5 AC1 20 HOH A 408 HOH A 411 HOH A 500 HOH A 607 SITE 1 AC2 10 GLY A 107 GLU A 112 SER A 128 GLY A 129 SITE 2 AC2 10 LEU A 237 ARG A 241 HOH A 407 HOH A 486 SITE 3 AC2 10 HOH A 593 HOH A 637 SITE 1 AC3 21 SER C 56 GLY C 58 GLY C 81 CYS C 82 SITE 2 AC3 21 GLY C 83 GLY C 86 TRP C 87 THR C 104 SITE 3 AC3 21 LYS C 105 HIS C 110 GLU C 111 LYS C 130 SITE 4 AC3 21 ASP C 131 VAL C 132 PHE C 133 ASP C 146 SITE 5 AC3 21 HOH C4110 HOH C4118 HOH C4174 HOH C4236 SITE 6 AC3 21 HOH C4310 CRYST1 60.920 184.870 51.420 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016415 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005409 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019448 0.00000