HEADER MEMBRANE PROTEIN 30-OCT-15 5EIK TITLE STRUCTURE OF A TRIMERIC INTRACELLULAR CATION CHANNEL FROM C. ELEGANS TITLE 2 IN THE ABSENCE OF CA2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN Y57A10A.28; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-252; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: CELE_Y57A10A.28, Y57A10A.28; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS GS115; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 644223; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: GS115; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPICZC KEYWDS MEMBRANE PROTEIN, CATION CHANNEL EXPDTA X-RAY DIFFRACTION AUTHOR M.H.HU,H.T.YANG,Z.F.LIU REVDAT 3 08-NOV-23 5EIK 1 COMPND HETNAM LINK ATOM REVDAT 2 25-DEC-19 5EIK 1 JRNL REMARK REVDAT 1 05-OCT-16 5EIK 0 JRNL AUTH H.T.YANG,M.H.HU,J.L.GUO,X.M.OU,T.X.CAI,Z.F.LIU JRNL TITL PORE ARCHITECTURE OF TRIC CHANNELS AND INSIGHTS INTO THEIR JRNL TITL 2 GATING MECHANISM. JRNL REF NATURE V. 538 537 2016 JRNL REFN ESSN 1476-4687 JRNL PMID 27698420 JRNL DOI 10.1038/NATURE19767 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 12.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 18464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM SELECTION REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 901 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1741 REMARK 3 BIN R VALUE (WORKING SET) : 0.3528 REMARK 3 BIN FREE R VALUE : 0.3776 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 93 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1851 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 263 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -13.68500 REMARK 3 B22 (A**2) : -13.68500 REMARK 3 B33 (A**2) : 27.37100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.470 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 6.287 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 6.064 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.197 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 87.54 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : LIPID_DETERGENT.PARAM REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EIK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000214841. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.53062 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18464 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 85.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11600 REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5EGI REMARK 200 REMARK 200 REMARK: RHOMBOHEDRAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG400, 50 MM NAAC BUFFER (PH REMARK 280 4.4), 50 MM MGAC2, 10 MM BETAINE HYDROCHLORIDE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 63.17000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.47122 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 45.19000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 63.17000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 36.47122 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 45.19000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 63.17000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 36.47122 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 45.19000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 63.17000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 36.47122 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 45.19000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 63.17000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 36.47122 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 45.19000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 63.17000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 36.47122 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 45.19000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 72.94243 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 90.38000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 72.94243 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 90.38000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 72.94243 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 90.38000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 72.94243 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 90.38000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 72.94243 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 90.38000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 72.94243 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 90.38000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -142.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 TRP A 3 REMARK 465 VAL A 4 REMARK 465 PRO A 5 REMARK 465 ASP A 6 REMARK 465 GLU A 7 REMARK 465 TRP A 8 REMARK 465 SER A 9 REMARK 465 VAL A 244 REMARK 465 LEU A 245 REMARK 465 MET A 246 REMARK 465 PRO A 247 REMARK 465 ILE A 248 REMARK 465 GLU A 249 REMARK 465 ASN A 250 REMARK 465 VAL A 251 REMARK 465 LEU A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 12 -9.29 -57.60 REMARK 500 LEU A 89 0.77 -68.20 REMARK 500 ASN A 185 90.33 -63.08 REMARK 500 MET A 212 -102.71 -112.64 REMARK 500 SER A 240 -30.87 -142.49 REMARK 500 VAL A 241 5.24 -152.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 488 DISTANCE = 7.84 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PT5 A 301 REMARK 610 CPL A 302 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 461 O REMARK 620 2 HOH A 463 O 86.6 REMARK 620 3 HOH A 480 O 120.6 79.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PT5 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CPL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMU A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMU A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMU A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues TYR A REMARK 800 21 through DMU A 310 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EGI RELATED DB: PDB DBREF 5EIK A 1 252 UNP Q9NA73 Q9NA73_CAEEL 1 252 SEQADV 5EIK HIS A 253 UNP Q9NA73 EXPRESSION TAG SEQADV 5EIK HIS A 254 UNP Q9NA73 EXPRESSION TAG SEQADV 5EIK HIS A 255 UNP Q9NA73 EXPRESSION TAG SEQADV 5EIK HIS A 256 UNP Q9NA73 EXPRESSION TAG SEQADV 5EIK HIS A 257 UNP Q9NA73 EXPRESSION TAG SEQADV 5EIK HIS A 258 UNP Q9NA73 EXPRESSION TAG SEQRES 1 A 258 MET GLY TRP VAL PRO ASP GLU TRP SER ILE ASP HIS ASP SEQRES 2 A 258 THR LEU ILE ASP ALA GLY GLY TYR VAL GLN LYS LEU LYS SEQRES 3 A 258 LEU TYR PRO TYR PHE ASP ALA ALA HIS TYR VAL LEU THR SEQRES 4 A 258 CYS LEU SER VAL ARG HIS ASP LEU GLY PRO ASP ALA ILE SEQRES 5 A 258 SER PHE SER ARG LYS HIS PRO PHE SER CYS TRP LEU SER SEQRES 6 A 258 CYS MET LEU MET SER PHE ALA GLY SER PHE LEU SER CYS SEQRES 7 A 258 PHE LEU LEU GLY GLU PRO ILE ILE SER PRO LEU LYS GLN SEQRES 8 A 258 HIS ALA ASP ILE LEU LEU GLY SER ILE VAL TRP TYR LEU SEQRES 9 A 258 VAL PHE TYR SER PRO PHE ASP VAL VAL PHE ARG LEU ALA SEQRES 10 A 258 THR TRP PHE PRO VAL LYS LEU GLY LEU SER VAL LEU LYS SEQRES 11 A 258 GLU VAL GLN ARG THR HIS LYS ILE ALA ALA GLY VAL LYS SEQRES 12 A 258 HIS ALA VAL ARG ILE TYR PRO GLU SER TYR LEU VAL GLN SEQRES 13 A 258 ILE LEU VAL GLY VAL ALA LYS GLY ALA GLY SER GLY VAL SEQRES 14 A 258 VAL LYS ILE VAL GLU GLN LEU ALA ARG GLY THR TRP HIS SEQRES 15 A 258 PRO THR ASN HIS GLU ILE LEU ARG PRO SER PHE THR THR SEQRES 16 A 258 LYS ALA CYS VAL ILE ALA SER ILE VAL PHE THR LEU GLU SEQRES 17 A 258 ARG HIS SER MET TYR VAL THR ALA PRO HIS ASP LEU VAL SEQRES 18 A 258 TYR LEU CYS VAL VAL GLY PHE PHE ILE TYR PHE LYS LEU SEQRES 19 A 258 ALA SER LEU CYS LEU SER VAL HIS ASP VAL LEU MET PRO SEQRES 20 A 258 ILE GLU ASN VAL LEU HIS HIS HIS HIS HIS HIS HET PT5 A 301 61 HET CPL A 302 49 HET MG A 303 1 HET ACT A 304 4 HET ACT A 305 4 HET ACT A 306 4 HET ACT A 307 4 HET ACT A 308 4 HET DMU A 309 33 HET DMU A 310 33 HET DMU A 311 33 HET DMU A 312 33 HETNAM PT5 [(2R)-1-OCTADECANOYLOXY-3-[OXIDANYL-[(1R,2R,3S,4R,5R, HETNAM 2 PT5 6S)-2,3,6-TRIS(OXIDANYL)-4,5-DIPHOSPHONOOXY- HETNAM 3 PT5 CYCLOHEXYL]OXY-PHOSPHO RYL]OXY-PROPAN-2-YL] (8Z)- HETNAM 4 PT5 ICOSA-5,8,11,14-TETRAENOATE HETNAM CPL 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION HETNAM DMU DECYL-BETA-D-MALTOPYRANOSIDE HETSYN PT5 PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE; PTDINS(4,5)P2 HETSYN CPL PALMITOYL-LINOLEOYL PHOSPHATIDYLCHOLINE HETSYN DMU DECYLMALTOSIDE FORMUL 2 PT5 C47 H85 O19 P3 FORMUL 3 CPL C42 H80 N O8 P FORMUL 4 MG MG 2+ FORMUL 5 ACT 5(C2 H3 O2 1-) FORMUL 10 DMU 4(C22 H42 O11) FORMUL 14 HOH *88(H2 O) HELIX 1 AA1 ILE A 10 LEU A 25 1 16 HELIX 2 AA2 PRO A 29 GLY A 48 1 20 HELIX 3 AA3 ASP A 50 HIS A 58 1 9 HELIX 4 AA4 HIS A 58 PHE A 71 1 14 HELIX 5 AA5 PHE A 71 GLY A 82 1 12 HELIX 6 AA6 ILE A 86 LYS A 90 5 5 HELIX 7 AA7 GLN A 91 SER A 108 1 18 HELIX 8 AA8 ASP A 111 THR A 118 1 8 HELIX 9 AA9 TRP A 119 TYR A 149 1 31 HELIX 10 AB1 SER A 152 GLY A 166 1 15 HELIX 11 AB2 GLY A 166 ARG A 178 1 13 HELIX 12 AB3 PHE A 193 HIS A 210 1 18 HELIX 13 AB4 PRO A 217 LEU A 239 1 23 LINK CE1 TYR A 21 O6 DMU A 310 1555 1555 1.53 LINK MG MG A 303 O HOH A 461 1555 1555 2.43 LINK MG MG A 303 O HOH A 463 1555 1555 2.83 LINK MG MG A 303 O HOH A 480 1555 1555 2.40 CISPEP 1 TYR A 28 PRO A 29 0 0.13 SITE 1 AC1 13 LEU A 64 LEU A 68 ILE A 85 LYS A 130 SITE 2 AC1 13 ARG A 134 ALA A 165 SER A 167 GLY A 168 SITE 3 AC1 13 THR A 195 ACT A 304 DMU A 312 HOH A 418 SITE 4 AC1 13 HOH A 428 SITE 1 AC2 4 TYR A 103 TYR A 107 ARG A 115 DMU A 309 SITE 1 AC3 4 HIS A 136 HOH A 461 HOH A 463 HOH A 480 SITE 1 AC4 3 LYS A 171 PT5 A 301 ACT A 305 SITE 1 AC5 4 SER A 42 HIS A 45 ASP A 46 ACT A 304 SITE 1 AC6 2 HOH A 426 HOH A 445 SITE 1 AC7 2 TYR A 28 ALA A 93 SITE 1 AC8 4 LEU A 41 THR A 118 HOH A 434 HOH A 435 SITE 1 AC9 4 TYR A 28 LEU A 96 CPL A 302 HOH A 410 SITE 1 AD1 6 TYR A 30 ARG A 115 LEU A 116 ALA A 117 SITE 2 AD1 6 TRP A 119 HOH A 408 SITE 1 AD2 12 PHE A 54 HIS A 58 PHE A 60 SER A 61 SITE 2 AD2 12 TRP A 63 LEU A 64 LEU A 158 ALA A 177 SITE 3 AD2 12 THR A 195 LYS A 196 VAL A 199 PT5 A 301 SITE 1 AD3 12 ASP A 17 ALA A 18 GLY A 19 GLY A 20 SITE 2 AD3 12 VAL A 22 GLN A 23 LYS A 24 LEU A 25 SITE 3 AD3 12 LYS A 26 TYR A 30 PHE A 31 GLY A 125 CRYST1 126.340 126.340 135.570 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007915 0.004570 0.000000 0.00000 SCALE2 0.000000 0.009140 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007376 0.00000