HEADER OXIDOREDUCTASE/BIOSYNTHETIC PROTEIN 30-OCT-15 5EIN TITLE CRYSTAL STRUCTURE OF C148A MUTANT OF LYSY FROM THERMUS THERMOPHILUS IN TITLE 2 COMPLEX WITH NADP+ AND LYSW-GAMMA-AMINOADIPIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE/N-ACETYL-GAMMA- COMPND 3 AMINOADIPYL-PHOSPHATE REDUCTASE; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: AGPR,N-ACETYL-GLUTAMATE SEMIALDEHYDE/N-ACETYL-AMINOADIPATE COMPND 6 SEMIALDEHYDE DEHYDROGENASE,NAGSA DEHYDROGENASE; COMPND 7 EC: 1.2.1.-,1.2.1.38; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: ALPHA-AMINOADIPATE CARRIER PROTEIN LYSW; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB27 / ATCC BAA- SOURCE 3 163 / DSM 7039); SOURCE 4 ORGANISM_TAXID: 262724; SOURCE 5 STRAIN: HB27 / ATCC BAA-163 / DSM 7039; SOURCE 6 GENE: ARGC2, ARGC, LYSY, TT_C1542; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VARIANT: CODONPLUS RIL; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 13 ORGANISM_TAXID: 274; SOURCE 14 GENE: ORFF; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: CODONPLUS RIL KEYWDS AMINO GROUP-CARRIER-PROTEIN, LYSINE BIOSYNTHESIS, GAPDH FAMILY, KEYWDS 2 OXIDOREDUCTASE-BIOSYNTHETIC PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.SHIMIZU,T.TOMITA,M.NISHIYAMA REVDAT 5 29-NOV-23 5EIN 1 REMARK REVDAT 4 15-NOV-23 5EIN 1 LINK ATOM REVDAT 3 05-APR-23 5EIN 1 COMPND REMARK SEQRES HET REVDAT 3 2 1 HETNAM FORMUL LINK SITE REVDAT 3 3 1 SCALE ATOM REVDAT 2 19-FEB-20 5EIN 1 JRNL REMARK REVDAT 1 23-MAR-16 5EIN 0 JRNL AUTH T.SHIMIZU,T.TOMITA,T.KUZUYAMA,M.NISHIYAMA JRNL TITL CRYSTAL STRUCTURE OF THE LYSYLYSW COMPLEX FROM THERMUS JRNL TITL 2 THERMOPHILUS. JRNL REF J.BIOL.CHEM. V. 291 9948 2016 JRNL REFN ESSN 1083-351X JRNL PMID 26966182 JRNL DOI 10.1074/JBC.M115.707034 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 70757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3761 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5219 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 280 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5779 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 166 REMARK 3 SOLVENT ATOMS : 553 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.213 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6104 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5781 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8288 ; 1.493 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13287 ; 0.802 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 741 ; 6.170 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 264 ;33.742 ;22.462 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 936 ;14.450 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;17.352 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 901 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6852 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1420 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2964 ; 1.691 ; 2.785 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2965 ; 1.691 ; 2.786 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3702 ; 2.665 ; 4.174 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3703 ; 2.665 ; 4.174 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3140 ; 1.970 ; 3.088 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3092 ; 1.951 ; 3.062 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4586 ; 3.104 ; 4.506 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7038 ; 5.392 ;23.326 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7039 ; 5.392 ;23.330 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5EIN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000214810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75384 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5EIO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MAGNESIUM FORMATE, NADP+, REMARK 280 HEPES-NAOH, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.85400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.92700 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.92700 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.85400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -55.92700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 706 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS B 209 O HOH B 501 2.13 REMARK 500 O HOH A 504 O HOH A 514 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 669 O HOH B 669 6554 1.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 234 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 234 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 234 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 234 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 32 -61.93 -94.86 REMARK 500 VAL A 314 -86.39 -106.67 REMARK 500 THR A 317 -76.20 -155.07 REMARK 500 TYR B 202 -63.64 -97.30 REMARK 500 VAL B 314 -91.46 -102.59 REMARK 500 THR B 317 -76.25 -155.78 REMARK 500 ASN C 16 69.56 63.29 REMARK 500 ASP C 38 70.27 38.06 REMARK 500 ALA C 49 117.26 174.67 REMARK 500 ASP C 51 67.51 -108.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 795 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A 796 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH B 741 DISTANCE = 6.45 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 5 SG REMARK 620 2 CYS C 8 SG 113.7 REMARK 620 3 CYS C 25 SG 108.0 103.1 REMARK 620 4 CYS C 28 SG 110.4 115.5 105.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EIO RELATED DB: PDB DBREF 5EIN A 1 344 UNP O50146 ARGC2_THET2 1 344 DBREF 5EIN B 1 344 UNP O50146 ARGC2_THET2 1 344 DBREF 5EIN C 1 54 UNP Q9ZND7 Q9ZND7_THETH 1 54 SEQADV 5EIN ALA A 148 UNP O50146 CYS 148 ENGINEERED MUTATION SEQADV 5EIN ALA B 148 UNP O50146 CYS 148 ENGINEERED MUTATION SEQRES 1 A 344 MET ASP LYS LYS THR LEU SER ILE VAL GLY ALA SER GLY SEQRES 2 A 344 TYR ALA GLY GLY GLU PHE LEU ARG LEU ALA LEU SER HIS SEQRES 3 A 344 PRO TYR LEU GLU VAL LYS GLN VAL THR SER ARG ARG PHE SEQRES 4 A 344 ALA GLY GLU PRO VAL HIS PHE VAL HIS PRO ASN LEU ARG SEQRES 5 A 344 GLY ARG THR ASN LEU LYS PHE ILE PRO PRO GLU LYS LEU SEQRES 6 A 344 GLU PRO ALA ASP ILE LEU VAL LEU ALA LEU PRO HIS GLY SEQRES 7 A 344 VAL PHE ALA ARG GLU PHE ASP ARG TYR SER ALA LEU ALA SEQRES 8 A 344 PRO ILE LEU ILE ASP LEU SER ALA ASP PHE ARG LEU LYS SEQRES 9 A 344 ASP PRO GLU LEU TYR ARG ARG TYR TYR GLY GLU HIS PRO SEQRES 10 A 344 ARG PRO ASP LEU LEU GLY CYS PHE VAL TYR ALA VAL PRO SEQRES 11 A 344 GLU LEU TYR ARG GLU ALA LEU LYS GLY ALA ASP TRP ILE SEQRES 12 A 344 ALA GLY ALA GLY ALA ASN ALA THR ALA THR LEU LEU GLY SEQRES 13 A 344 LEU TYR PRO LEU LEU LYS ALA GLY VAL LEU LYS PRO THR SEQRES 14 A 344 PRO ILE PHE VAL THR LEU LEU ILE SER THR SER ALA ALA SEQRES 15 A 344 GLY ALA GLU ALA SER PRO ALA SER HIS HIS PRO GLU ARG SEQRES 16 A 344 ALA GLY SER ILE ARG VAL TYR LYS PRO THR GLY HIS ARG SEQRES 17 A 344 HIS THR ALA GLU VAL VAL GLU ASN LEU PRO GLY ARG PRO SEQRES 18 A 344 GLU VAL HIS LEU THR ALA ILE ALA THR ASP ARG VAL ARG SEQRES 19 A 344 GLY ILE LEU MET THR ALA GLN CYS PHE VAL GLN ASP GLY SEQRES 20 A 344 TRP SER GLU ARG ASP VAL TRP GLN ALA TYR ARG GLU ALA SEQRES 21 A 344 TYR ALA GLY GLU PRO PHE ILE ARG LEU VAL LYS GLN LYS SEQRES 22 A 344 LYS GLY VAL HIS ARG TYR PRO ASP PRO ARG PHE VAL GLN SEQRES 23 A 344 GLY THR ASN TYR ALA ASP ILE GLY PHE GLU LEU GLU GLU SEQRES 24 A 344 ASP THR GLY ARG LEU VAL VAL MET THR ALA ILE ASP ASN SEQRES 25 A 344 LEU VAL LYS GLY THR ALA GLY HIS ALA LEU GLN ALA LEU SEQRES 26 A 344 ASN VAL ARG MET GLY TRP PRO GLU THR LEU GLY LEU ASP SEQRES 27 A 344 PHE PRO GLY LEU HIS PRO SEQRES 1 B 344 MET ASP LYS LYS THR LEU SER ILE VAL GLY ALA SER GLY SEQRES 2 B 344 TYR ALA GLY GLY GLU PHE LEU ARG LEU ALA LEU SER HIS SEQRES 3 B 344 PRO TYR LEU GLU VAL LYS GLN VAL THR SER ARG ARG PHE SEQRES 4 B 344 ALA GLY GLU PRO VAL HIS PHE VAL HIS PRO ASN LEU ARG SEQRES 5 B 344 GLY ARG THR ASN LEU LYS PHE ILE PRO PRO GLU LYS LEU SEQRES 6 B 344 GLU PRO ALA ASP ILE LEU VAL LEU ALA LEU PRO HIS GLY SEQRES 7 B 344 VAL PHE ALA ARG GLU PHE ASP ARG TYR SER ALA LEU ALA SEQRES 8 B 344 PRO ILE LEU ILE ASP LEU SER ALA ASP PHE ARG LEU LYS SEQRES 9 B 344 ASP PRO GLU LEU TYR ARG ARG TYR TYR GLY GLU HIS PRO SEQRES 10 B 344 ARG PRO ASP LEU LEU GLY CYS PHE VAL TYR ALA VAL PRO SEQRES 11 B 344 GLU LEU TYR ARG GLU ALA LEU LYS GLY ALA ASP TRP ILE SEQRES 12 B 344 ALA GLY ALA GLY ALA ASN ALA THR ALA THR LEU LEU GLY SEQRES 13 B 344 LEU TYR PRO LEU LEU LYS ALA GLY VAL LEU LYS PRO THR SEQRES 14 B 344 PRO ILE PHE VAL THR LEU LEU ILE SER THR SER ALA ALA SEQRES 15 B 344 GLY ALA GLU ALA SER PRO ALA SER HIS HIS PRO GLU ARG SEQRES 16 B 344 ALA GLY SER ILE ARG VAL TYR LYS PRO THR GLY HIS ARG SEQRES 17 B 344 HIS THR ALA GLU VAL VAL GLU ASN LEU PRO GLY ARG PRO SEQRES 18 B 344 GLU VAL HIS LEU THR ALA ILE ALA THR ASP ARG VAL ARG SEQRES 19 B 344 GLY ILE LEU MET THR ALA GLN CYS PHE VAL GLN ASP GLY SEQRES 20 B 344 TRP SER GLU ARG ASP VAL TRP GLN ALA TYR ARG GLU ALA SEQRES 21 B 344 TYR ALA GLY GLU PRO PHE ILE ARG LEU VAL LYS GLN LYS SEQRES 22 B 344 LYS GLY VAL HIS ARG TYR PRO ASP PRO ARG PHE VAL GLN SEQRES 23 B 344 GLY THR ASN TYR ALA ASP ILE GLY PHE GLU LEU GLU GLU SEQRES 24 B 344 ASP THR GLY ARG LEU VAL VAL MET THR ALA ILE ASP ASN SEQRES 25 B 344 LEU VAL LYS GLY THR ALA GLY HIS ALA LEU GLN ALA LEU SEQRES 26 B 344 ASN VAL ARG MET GLY TRP PRO GLU THR LEU GLY LEU ASP SEQRES 27 B 344 PHE PRO GLY LEU HIS PRO SEQRES 1 C 54 MET VAL GLY THR CYS PRO GLU CYS GLY ALA GLU LEU ARG SEQRES 2 C 54 LEU GLU ASN PRO GLU LEU GLY GLU LEU VAL VAL CYS GLU SEQRES 3 C 54 ASP CYS GLY ALA GLU LEU GLU VAL VAL GLY LEU ASP PRO SEQRES 4 C 54 LEU ARG LEU GLU PRO ALA PRO GLU GLU ALA GLU ASP TRP SEQRES 5 C 54 GLY R0K MODRES 5EIN R0K C 54 GLU MODIFIED RESIDUE HET R0K C 54 20 HET NAP A 401 48 HET FMT A 402 3 HET FMT A 403 3 HET FMT A 404 3 HET FMT A 405 3 HET FMT A 406 3 HET FMT A 407 3 HET FMT A 408 3 HET FMT A 409 3 HET FMT A 410 3 HET FMT A 411 3 HET FMT A 412 3 HET FMT A 413 3 HET NAP B 401 48 HET FMT B 402 3 HET FMT B 403 3 HET FMT B 404 3 HET FMT B 405 3 HET FMT B 406 3 HET FMT B 407 3 HET FMT B 408 3 HET FMT B 409 3 HET FMT B 410 3 HET FMT B 411 3 HET FMT B 412 3 HET ZN C 101 1 HETNAM R0K (2~{S})-2-[[(4~{S})-4-AZANYL-5-OXIDANYL-5- HETNAM 2 R0K OXIDANYLIDENE-PENTANOYL]AMINO]HEXANEDIOIC ACID HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM FMT FORMIC ACID HETNAM ZN ZINC ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 R0K C11 H18 N2 O7 FORMUL 4 NAP 2(C21 H28 N7 O17 P3) FORMUL 5 FMT 23(C H2 O2) FORMUL 29 ZN ZN 2+ FORMUL 30 HOH *553(H2 O) HELIX 1 AA1 GLY A 13 SER A 25 1 13 HELIX 2 AA2 PRO A 43 VAL A 47 5 5 HELIX 3 AA3 HIS A 48 ARG A 52 5 5 HELIX 4 AA4 PRO A 61 LEU A 65 5 5 HELIX 5 AA5 GLY A 78 GLU A 83 1 6 HELIX 6 AA6 GLU A 83 ALA A 89 1 7 HELIX 7 AA7 ASP A 105 GLY A 114 1 10 HELIX 8 AA8 ARG A 118 LEU A 122 5 5 HELIX 9 AA9 VAL A 129 LYS A 138 1 10 HELIX 10 AB1 GLY A 147 GLY A 164 1 18 HELIX 11 AB2 SER A 178 GLY A 183 5 6 HELIX 12 AB3 SER A 187 SER A 190 5 4 HELIX 13 AB4 HIS A 191 ALA A 196 1 6 HELIX 14 AB5 HIS A 209 ASN A 216 1 8 HELIX 15 AB6 SER A 249 ALA A 262 1 14 HELIX 16 AB7 ASP A 281 GLN A 286 1 6 HELIX 17 AB8 THR A 317 GLY A 330 1 14 HELIX 18 AB9 GLY B 13 LEU B 24 1 12 HELIX 19 AC1 PRO B 43 VAL B 47 5 5 HELIX 20 AC2 HIS B 48 ARG B 52 5 5 HELIX 21 AC3 PRO B 61 LEU B 65 5 5 HELIX 22 AC4 GLY B 78 GLU B 83 1 6 HELIX 23 AC5 GLU B 83 ALA B 89 1 7 HELIX 24 AC6 ASP B 105 GLY B 114 1 10 HELIX 25 AC7 ARG B 118 LEU B 122 5 5 HELIX 26 AC8 VAL B 129 LYS B 138 1 10 HELIX 27 AC9 GLY B 147 ALA B 163 1 17 HELIX 28 AD1 SER B 178 GLY B 183 5 6 HELIX 29 AD2 SER B 187 SER B 190 5 4 HELIX 30 AD3 HIS B 191 ALA B 196 1 6 HELIX 31 AD4 HIS B 209 GLU B 215 1 7 HELIX 32 AD5 SER B 249 ALA B 262 1 14 HELIX 33 AD6 ASP B 281 GLN B 286 1 6 HELIX 34 AD7 THR B 317 MET B 329 1 13 SHEET 1 AA1 6 LEU A 29 VAL A 34 0 SHEET 2 AA1 6 LYS A 4 VAL A 9 1 N LYS A 4 O GLU A 30 SHEET 3 AA1 6 ILE A 70 LEU A 73 1 O VAL A 72 N VAL A 9 SHEET 4 AA1 6 ILE A 93 ASP A 96 1 O ILE A 95 N LEU A 73 SHEET 5 AA1 6 TRP A 142 ALA A 144 1 O ILE A 143 N LEU A 94 SHEET 6 AA1 6 VAL A 126 TYR A 127 1 N VAL A 126 O ALA A 144 SHEET 1 AA2 7 ARG A 200 LYS A 203 0 SHEET 2 AA2 7 VAL A 223 ALA A 229 -1 O ALA A 229 N ARG A 200 SHEET 3 AA2 7 ILE A 171 ILE A 177 1 N VAL A 173 O HIS A 224 SHEET 4 AA2 7 ILE A 236 PHE A 243 -1 O LEU A 237 N LEU A 176 SHEET 5 AA2 7 ARG A 303 ILE A 310 -1 O LEU A 304 N CYS A 242 SHEET 6 AA2 7 ALA A 291 LEU A 297 -1 N GLY A 294 O MET A 307 SHEET 7 AA2 7 ILE A 267 LEU A 269 1 N ARG A 268 O ILE A 293 SHEET 1 AA3 6 LEU B 29 VAL B 34 0 SHEET 2 AA3 6 LYS B 4 VAL B 9 1 N LEU B 6 O LYS B 32 SHEET 3 AA3 6 ILE B 70 LEU B 73 1 O VAL B 72 N VAL B 9 SHEET 4 AA3 6 ILE B 93 ASP B 96 1 O ILE B 95 N LEU B 73 SHEET 5 AA3 6 TRP B 142 ALA B 144 1 O ILE B 143 N LEU B 94 SHEET 6 AA3 6 VAL B 126 TYR B 127 1 N VAL B 126 O ALA B 144 SHEET 1 AA4 7 ARG B 200 LYS B 203 0 SHEET 2 AA4 7 VAL B 223 ALA B 229 -1 O ALA B 229 N ARG B 200 SHEET 3 AA4 7 ILE B 171 ILE B 177 1 N VAL B 173 O HIS B 224 SHEET 4 AA4 7 ILE B 236 PHE B 243 -1 O LEU B 237 N LEU B 176 SHEET 5 AA4 7 ARG B 303 ILE B 310 -1 O THR B 308 N MET B 238 SHEET 6 AA4 7 ALA B 291 LEU B 297 -1 N GLY B 294 O MET B 307 SHEET 7 AA4 7 ILE B 267 LEU B 269 1 N ARG B 268 O ILE B 293 SHEET 1 AA5 2 VAL C 2 THR C 4 0 SHEET 2 AA5 2 GLU C 11 ARG C 13 -1 O LEU C 12 N GLY C 3 SHEET 1 AA6 3 LEU C 22 VAL C 24 0 SHEET 2 AA6 3 GLU C 31 GLY C 36 -1 O LEU C 32 N VAL C 23 SHEET 3 AA6 3 ARG C 41 PRO C 44 -1 O GLU C 43 N GLU C 33 LINK C GLY C 53 N R0K C 54 1555 1555 1.34 LINK SG CYS C 5 ZN ZN C 101 1555 1555 2.31 LINK SG CYS C 8 ZN ZN C 101 1555 1555 2.37 LINK SG CYS C 25 ZN ZN C 101 1555 1555 2.40 LINK SG CYS C 28 ZN ZN C 101 1555 1555 2.35 CISPEP 1 HIS A 343 PRO A 344 0 -0.13 CISPEP 2 HIS B 343 PRO B 344 0 -1.15 CISPEP 3 ASP C 38 PRO C 39 0 6.13 CRYST1 83.540 83.540 167.781 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011970 0.006911 0.000000 0.00000 SCALE2 0.000000 0.013822 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005960 0.00000