HEADER OXIDOREDUCTASE 03-NOV-15 5EK8 TITLE CRYSTAL STRUCTURE OF A 9R-LIPOXYGENASE FROM CYANOTHECE PCC8801 AT 2.7 TITLE 2 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CSPLOX1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYANOTHECE SP. (STRAIN PCC 8801); SOURCE 3 ORGANISM_TAXID: 41431; SOURCE 4 GENE: PCC8801_2437; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS NON-HEME IRON, PLAT DOMAIN, LIPOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.FEUSSNER,R.FICNER,P.NEUMANN,J.NEWIE,A.ANDREOU,O.EINSLE REVDAT 4 17-JUL-19 5EK8 1 REMARK REVDAT 3 10-FEB-16 5EK8 1 JRNL REVDAT 2 13-JAN-16 5EK8 1 JRNL REVDAT 1 23-DEC-15 5EK8 0 JRNL AUTH J.NEWIE,A.ANDREOU,P.NEUMANN,O.EINSLE,I.FEUSSNER,R.FICNER JRNL TITL CRYSTAL STRUCTURE OF A LIPOXYGENASE FROM CYANOTHECE SP. MAY JRNL TITL 2 REVEAL NOVEL FEATURES FOR SUBSTRATE ACQUISITION. JRNL REF J.LIPID RES. V. 57 276 2016 JRNL REFN ISSN 0022-2275 JRNL PMID 26667668 JRNL DOI 10.1194/JLR.M064980 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.320 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7631 - 5.7732 1.00 2962 135 0.1796 0.2210 REMARK 3 2 5.7732 - 4.6014 1.00 2786 146 0.1630 0.2030 REMARK 3 3 4.6014 - 4.0253 1.00 2726 158 0.1535 0.1934 REMARK 3 4 4.0253 - 3.6598 1.00 2734 128 0.2006 0.2396 REMARK 3 5 3.6598 - 3.3989 1.00 2671 162 0.2210 0.2912 REMARK 3 6 3.3989 - 3.1994 1.00 2659 152 0.2265 0.2982 REMARK 3 7 3.1994 - 3.0398 1.00 2648 149 0.2440 0.2833 REMARK 3 8 3.0398 - 2.9079 1.00 2692 128 0.2482 0.2903 REMARK 3 9 2.9079 - 2.7963 1.00 2635 159 0.2721 0.3214 REMARK 3 10 2.7963 - 2.7000 0.99 2625 127 0.2789 0.3564 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5539 REMARK 3 ANGLE : 0.823 7538 REMARK 3 CHIRALITY : 0.033 819 REMARK 3 PLANARITY : 0.004 992 REMARK 3 DIHEDRAL : 13.968 2078 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 1:22) REMARK 3 ORIGIN FOR THE GROUP (A): 56.2212 -5.0810 37.7865 REMARK 3 T TENSOR REMARK 3 T11: 0.5820 T22: 0.6607 REMARK 3 T33: 0.5677 T12: 0.0234 REMARK 3 T13: 0.0093 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 5.0940 L22: 5.4725 REMARK 3 L33: 1.9029 L12: 0.0610 REMARK 3 L13: 0.4121 L23: -3.1928 REMARK 3 S TENSOR REMARK 3 S11: -0.2265 S12: 0.2902 S13: -0.3123 REMARK 3 S21: -0.1658 S22: 0.0099 S23: -0.2215 REMARK 3 S31: 0.2554 S32: 0.0760 S33: 0.0848 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 23:42) REMARK 3 ORIGIN FOR THE GROUP (A): 58.1895 22.8683 38.0998 REMARK 3 T TENSOR REMARK 3 T11: 0.8573 T22: 0.7186 REMARK 3 T33: 0.5835 T12: -0.0020 REMARK 3 T13: -0.0771 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.3705 L22: 4.7547 REMARK 3 L33: 2.9353 L12: -0.6698 REMARK 3 L13: 0.3539 L23: -3.4112 REMARK 3 S TENSOR REMARK 3 S11: 0.0868 S12: 0.0310 S13: -0.0457 REMARK 3 S21: 0.1438 S22: -0.0242 S23: -0.1170 REMARK 3 S31: -0.1967 S32: 0.2029 S33: -0.1104 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 43:165) REMARK 3 ORIGIN FOR THE GROUP (A): 62.8070 36.4715 19.5255 REMARK 3 T TENSOR REMARK 3 T11: 0.7328 T22: 0.6554 REMARK 3 T33: 0.5705 T12: -0.2439 REMARK 3 T13: -0.0854 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 1.1349 L22: 1.2208 REMARK 3 L33: 0.9495 L12: 0.3967 REMARK 3 L13: -0.0349 L23: 0.0675 REMARK 3 S TENSOR REMARK 3 S11: -0.1839 S12: 0.2199 S13: 0.4104 REMARK 3 S21: 0.0920 S22: 0.0758 S23: -0.0132 REMARK 3 S31: -0.5746 S32: 0.4778 S33: 0.0928 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 166:847) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9188 7.5951 21.6707 REMARK 3 T TENSOR REMARK 3 T11: 0.2838 T22: 0.3368 REMARK 3 T33: 0.3191 T12: 0.0296 REMARK 3 T13: 0.0070 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.7153 L22: 1.1092 REMARK 3 L33: 1.1658 L12: 0.6220 REMARK 3 L13: 0.0402 L23: -0.0219 REMARK 3 S TENSOR REMARK 3 S11: -0.0343 S12: -0.0664 S13: 0.0709 REMARK 3 S21: 0.0914 S22: 0.0224 S23: 0.0618 REMARK 3 S31: -0.0140 S32: -0.0508 S33: 0.0071 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EK8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215043. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91736, 1.03663 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28631 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.09900 REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.67500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELXCD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PENTAERYTHRITOL PROPOXYLATE (5/4 REMARK 280 PO/OH), 0.14 M KCL AND 50 MM HEPES, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.22433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 156.44867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 78.22433 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 156.44867 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.22433 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 156.44867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 78.22433 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 156.44867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 522 NH2 ARG A 528 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 47 148.48 179.36 REMARK 500 ASN A 65 18.82 56.96 REMARK 500 GLU A 181 55.48 -113.49 REMARK 500 ASP A 184 78.97 -153.10 REMARK 500 SER A 318 77.97 -63.54 REMARK 500 HIS A 359 -82.78 -90.27 REMARK 500 ALA A 363 -60.68 -94.01 REMARK 500 ARG A 379 -71.72 -127.10 REMARK 500 SER A 393 -8.89 70.95 REMARK 500 PRO A 408 -28.12 -38.90 REMARK 500 ASP A 439 15.71 56.49 REMARK 500 THR A 567 -91.45 -105.70 REMARK 500 SER A 595 -0.51 62.78 REMARK 500 ARG A 648 43.88 -107.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 702 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 285 OD1 REMARK 620 2 VAL A 414 O 140.4 REMARK 620 3 GLY A 417 O 66.8 74.0 REMARK 620 4 LEU A 419 O 86.0 84.6 83.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 701 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 359 NE2 REMARK 620 2 HIS A 364 NE2 92.2 REMARK 620 3 HIS A 570 NE2 102.0 96.3 REMARK 620 4 ILE A 668 OXT 165.3 100.8 69.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 702 DBREF 5EK8 A 1 668 UNP B7K2Q5 B7K2Q5_CYAP8 1 668 SEQRES 1 A 668 MET SER THR LYS THR LYS THR ILE PHE ASP GLU ILE LYS SEQRES 2 A 668 ALA ALA LEU VAL LEU LYS VAL ILE ASP SER PRO LEU GLY SEQRES 3 A 668 ARG LYS LEU ILE GLU GLU LYS ALA GLU LYS GLN VAL SER SEQRES 4 A 668 LYS THR GLN GLU ALA ILE THR LYS PRO ILE GLU GLN LEU SEQRES 5 A 668 ASN LYS ALA THR GLY GLN LEU LEU PHE SER ASP THR ASN SEQRES 6 A 668 LYS PRO LEU HIS ASN ILE GLU LEU GLU VAL TRP ASP ARG SEQRES 7 A 668 ASP VAL GLY THR PRO SER ASP TYR LEU GLY LYS GLY VAL SEQRES 8 A 668 THR ASP GLN ASN GLY ARG PHE GLU ILE TYR TYR ASP PRO SEQRES 9 A 668 GLU LYS ALA GLY PHE LYS ASP ALA PRO ASP LEU GLU LEU SEQRES 10 A 668 ARG VAL ILE ASP ASN ARG VAL THR PHE ASP SER ASP ASN SEQRES 11 A 668 GLN PRO VAL TYR THR ASN ARG ILE ALA TYR ILE ILE LYS SEQRES 12 A 668 GLY GLY ASP ASN VAL THR GLN LYS THR TYR ASP PHE GLY SEQRES 13 A 668 THR LEU THR VAL PRO TYR TRP PRO TYR ASP PRO ASN SER SEQRES 14 A 668 PRO PHE ALA ARG ILE PHE MET PRO ASN PRO GLU GLU THR SEQRES 15 A 668 PRO ASP ASP TYR SER VAL GLY ARG LYS PHE GLN ALA TYR SEQRES 16 A 668 ALA SER ALA ASN VAL LEU THR PRO ILE LYS ALA LYS HIS SEQRES 17 A 668 THR ILE ALA ASN THR LEU ASN PRO LYS GLU PRO SER LEU SEQRES 18 A 668 THR GLN ILE GLN ALA ASP TYR PRO PRO ASN LEU THR ILE SEQRES 19 A 668 ASN LEU ASP ARG GLU LYS PRO GLY TYR THR ARG SER ASP SEQRES 20 A 668 GLU TYR PHE VAL LEU ARG VAL LEU ASN GLY MET ASN PRO SEQRES 21 A 668 CYS LEU LEU LYS ARG SER LYS SER ASP PRO ASN GLN PHE SEQRES 22 A 668 LYS MET SER PHE ILE TRP ASP ASN TYR GLU LYS ASP THR SEQRES 23 A 668 GLU HIS ASP LEU HIS ASN VAL GLU ALA TYR PHE VAL LEU SEQRES 24 A 668 LYS ASP GLY LYS LEU PHE PRO THR MET ILE THR ILE GLN SEQRES 25 A 668 SER ARG TYR PRO ASP SER LEU ALA PRO HIS SER PRO LEU SEQRES 26 A 668 LYS ASP ARG GLU VAL TYR THR PRO ASN ASP GLY GLU LYS SEQRES 27 A 668 TRP LEU GLN ALA LYS ARG ILE PHE ARG THR ALA ALA LEU SEQRES 28 A 668 PHE ASP GLY GLU ALA ILE GLU HIS TYR ALA LYS ALA HIS SEQRES 29 A 668 VAL GLN MET GLU GLN TYR ALA VAL ALA CYS PHE ARG ASN SEQRES 30 A 668 LEU ARG LYS ASN PRO ILE ARG LEU MET LEU THR PRO HIS SEQRES 31 A 668 LEU LYS SER ILE ILE ASN ILE ASN ARG ARG GLY ASP ASP SEQRES 32 A 668 LEU LEU VAL GLU PRO ASN LEU GLY LEU PHE VAL THR ASN SEQRES 33 A 668 GLY PRO LEU THR TYR PRO GLY PHE LEU GLN MET CYS THR SEQRES 34 A 668 GLU VAL VAL ALA THR TYR ASP TRP LYS ASP TRP GLN PRO SEQRES 35 A 668 ARG GLN PRO ILE CYS ASP ASP HIS LYS TYR ALA LYS ALA SEQRES 36 A 668 ALA ASN LEU TYR TRP GLN ILE LEU THR GLU TYR VAL ASP SEQRES 37 A 668 ALA PHE PHE ALA LYS HIS GLN GLN ALA ILE ALA ASP GLU SEQRES 38 A 668 TRP VAL GLU ILE ARG ARG PHE SER GLU ASP LEU VAL GLU SEQRES 39 A 668 HIS SER MET PRO TYR GLN PRO ILE GLU GLY ILE MET ALA SEQRES 40 A 668 ASN THR ASP SER ASP TYR GLU TRP TYR ASP THR GLY GLU SEQRES 41 A 668 LEU ASP LYS PRO ASP LEU PRO ARG ALA THR PHE ASN GLY SEQRES 42 A 668 LYS THR LYS VAL ILE ARG PRO ILE THR ASN SER ASN GLN SEQRES 43 A 668 PRO SER ALA THR ASP ILE ASP ASN LEU LYS GLN CYS CYS SEQRES 44 A 668 ARG HIS ILE ILE PHE HIS THR THR LEU TRP HIS THR TRP SEQRES 45 A 668 VAL ASN ASP SER GLN SER ASP GLU GLY GLY GLU LEU ALA SEQRES 46 A 668 TYR ASN SER LEU ALA LEU ARG ASN GLY SER PHE GLY SER SEQRES 47 A 668 GLU THR ASP PRO ASN ILE ALA PRO ASP PRO ILE GLU ALA SEQRES 48 A 668 THR ASN GLN VAL TYR ILE PHE SER VAL LEU ASN GLY ILE SEQRES 49 A 668 LYS TYR GLY LEU LEU VAL LYS ASN GLU ASP ASP ASP VAL SEQRES 50 A 668 PRO GLU GLU LEU ARG THR ALA LEU LEU ASN ARG LYS ASP SEQRES 51 A 668 GLN PHE ALA GLU LEU GLY ILE ASP ILE GLY ASN ILE ARG SEQRES 52 A 668 THR LEU ILE ASN ILE HET FE2 A 701 1 HET NA A 702 1 HETNAM FE2 FE (II) ION HETNAM NA SODIUM ION FORMUL 2 FE2 FE 2+ FORMUL 3 NA NA 1+ FORMUL 4 HOH *51(H2 O) HELIX 1 AA1 MET A 1 ASP A 22 1 22 HELIX 2 AA2 SER A 23 GLN A 37 1 15 HELIX 3 AA3 ASP A 103 GLY A 108 5 6 HELIX 4 AA4 ASN A 178 THR A 182 5 5 HELIX 5 AA5 SER A 187 ASN A 215 1 29 HELIX 6 AA6 SER A 220 TYR A 228 1 9 HELIX 7 AA7 ASN A 231 LYS A 240 1 10 HELIX 8 AA8 GLY A 242 ARG A 245 5 4 HELIX 9 AA9 SER A 246 GLY A 257 1 12 HELIX 10 AB1 GLY A 336 ILE A 357 1 22 HELIX 11 AB2 ALA A 363 LEU A 378 1 16 HELIX 12 AB3 PRO A 382 LYS A 392 1 11 HELIX 13 AB4 SER A 393 LEU A 405 1 13 HELIX 14 AB5 GLY A 411 ASN A 416 1 6 HELIX 15 AB6 THR A 420 ALA A 433 1 14 HELIX 16 AB7 HIS A 450 HIS A 474 1 25 HELIX 17 AB8 HIS A 474 GLU A 481 1 8 HELIX 18 AB9 GLU A 481 SER A 496 1 16 HELIX 19 AC1 SER A 548 THR A 567 1 20 HELIX 20 AC2 THR A 567 ASP A 575 1 9 HELIX 21 AC3 SER A 576 GLY A 582 1 7 HELIX 22 AC4 ASP A 607 ILE A 624 1 18 HELIX 23 AC5 PRO A 638 ARG A 648 1 11 HELIX 24 AC6 ARG A 648 GLU A 654 1 7 HELIX 25 AC7 ASP A 658 ILE A 662 5 5 SHEET 1 AA1 3 ARG A 97 TYR A 102 0 SHEET 2 AA1 3 ASN A 53 PHE A 61 -1 N GLY A 57 O PHE A 98 SHEET 3 AA1 3 THR A 152 VAL A 160 1 O VAL A 160 N LEU A 60 SHEET 1 AA2 4 THR A 82 VAL A 91 0 SHEET 2 AA2 4 GLU A 72 ASP A 79 -1 N LEU A 73 O GLY A 90 SHEET 3 AA2 4 LEU A 115 PHE A 126 -1 O GLU A 116 N TRP A 76 SHEET 4 AA2 4 PRO A 132 LYS A 143 -1 O VAL A 133 N THR A 125 SHEET 1 AA3 6 GLU A 329 TYR A 331 0 SHEET 2 AA3 6 LYS A 303 SER A 313 -1 N ILE A 311 O GLU A 329 SHEET 3 AA3 6 HIS A 291 LYS A 300 -1 N TYR A 296 O MET A 308 SHEET 4 AA3 6 GLN A 272 PHE A 277 -1 N PHE A 273 O PHE A 297 SHEET 5 AA3 6 LYS A 264 SER A 266 -1 N LYS A 264 O LYS A 274 SHEET 6 AA3 6 TYR A 513 TRP A 515 -1 O GLU A 514 N ARG A 265 SHEET 1 AA4 2 THR A 530 PHE A 531 0 SHEET 2 AA4 2 LYS A 534 THR A 535 -1 O LYS A 534 N PHE A 531 LINK OD1 ASP A 285 NA NA A 702 1555 1555 2.54 LINK NE2 HIS A 359 FE FE2 A 701 1555 1555 2.46 LINK NE2 HIS A 364 FE FE2 A 701 1555 1555 2.48 LINK O VAL A 414 NA NA A 702 1555 1555 2.45 LINK O GLY A 417 NA NA A 702 1555 1555 2.63 LINK O LEU A 419 NA NA A 702 1555 1555 2.70 LINK NE2 HIS A 570 FE FE2 A 701 1555 1555 2.49 LINK OXT ILE A 668 FE FE2 A 701 1555 1555 2.45 CISPEP 1 GLU A 218 PRO A 219 0 -0.56 SITE 1 AC1 5 HIS A 359 HIS A 364 HIS A 570 ASN A 574 SITE 2 AC1 5 ILE A 668 SITE 1 AC2 5 ASP A 285 VAL A 414 THR A 415 GLY A 417 SITE 2 AC2 5 LEU A 419 CRYST1 121.166 121.166 234.673 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008253 0.004765 0.000000 0.00000 SCALE2 0.000000 0.009530 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004261 0.00000