HEADER TOXIN 04-NOV-15 5ELD TITLE CHOLERA TOXIN CLASSICAL B-PENTAMER IN COMPLEX WITH A LEWIS-Y COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLERA ENTEROTOXIN B SUBUNIT; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: CHOLERA TOXIN B-PENTAMER, CLASSICAL VARIANT,CHOLERA COMPND 5 ENTEROTOXIN SUBUNIT B,CHOLERA TOXIN B PROTEIN (CTB),CHOLERA TOXIN B COMPND 6 SUBUNIT,CHOLERA TOXIN BETA SUBUNIT,CHOLERA TOXIN SUBUNIT B,CHOLERAE COMPND 7 TOXIN B SUBUNIT,CTXB; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1; SOURCE 3 ORGANISM_TAXID: 127906; SOURCE 4 GENE: CTXB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CHOLERA TOXIN B-PENTAMER, A LEWIS-Y, COMPLEX, BLOOD GROUP KEYWDS 2 OLIGOSACCHARIDE/ANTIGEN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR J.E.HEGGELUND,D.BURSCHOWSKY,U.KRENGEL REVDAT 6 23-OCT-24 5ELD 1 REMARK REVDAT 5 10-JAN-24 5ELD 1 REMARK HETSYN REVDAT 4 29-JUL-20 5ELD 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 11-MAY-16 5ELD 1 SOURCE REVDAT 2 27-APR-16 5ELD 1 JRNL REVDAT 1 30-MAR-16 5ELD 0 JRNL AUTH J.E.HEGGELUND,D.BURSCHOWSKY,V.A.BJRNESTAD,V.HODNIK, JRNL AUTH 2 G.ANDERLUH,U.KRENGEL JRNL TITL HIGH-RESOLUTION CRYSTAL STRUCTURES ELUCIDATE THE MOLECULAR JRNL TITL 2 BASIS OF CHOLERA BLOOD GROUP DEPENDENCE. JRNL REF PLOS PATHOG. V. 12 05567 2016 JRNL REFN ESSN 1553-7374 JRNL PMID 27082955 JRNL DOI 10.1371/JOURNAL.PPAT.1005567 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 122617 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6438 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8785 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 416 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4070 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 345 REMARK 3 SOLVENT ATOMS : 610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : 0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.239 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4939 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4752 ; 0.005 ; 0.021 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6769 ; 1.806 ; 2.057 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11116 ; 1.335 ; 3.054 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 584 ; 6.848 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 195 ;40.056 ;25.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 860 ;12.750 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;27.755 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 890 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5042 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 993 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2138 ; 1.382 ; 1.487 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2137 ; 1.379 ; 1.486 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2684 ; 2.202 ; 2.220 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2685 ; 2.204 ; 2.221 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2801 ; 1.801 ; 1.798 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2802 ; 1.801 ; 1.798 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4049 ; 2.836 ; 2.609 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5783 ; 5.253 ;13.461 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5784 ; 5.253 ;13.463 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ELD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000214976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOVEMBER 3, 2014 REMARK 200 DATA SCALING SOFTWARE : XDS NOVEMBER 3, 2014 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 129054 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.99300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.2.08; 09.12.2013 REMARK 200 STARTING MODEL: 3CHB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES-IMIDAZOLE, 25% PEG4000, 5% REMARK 280 PGA-LM, PH 6.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.85000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.36750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.90300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.36750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.85000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.90300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG D 67 OD1 ASP E 70 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 101 CG - SD - CE ANGL. DEV. = -17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 34 -1.12 66.86 REMARK 500 LYS C 34 -0.40 73.43 REMARK 500 LYS D 34 -0.15 69.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 MES C 201 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 79 OE1 REMARK 620 2 GLU A 79 OE1 19.9 REMARK 620 3 HOH A 399 O 99.6 107.4 REMARK 620 4 CYS B 9 O 99.5 105.8 4.6 REMARK 620 5 TYR B 12 O 96.2 102.8 5.7 3.3 REMARK 620 6 THR B 15 OG1 95.9 103.2 4.5 4.1 2.0 REMARK 620 7 HOH B 366 O 95.5 103.5 4.0 5.8 4.3 2.3 REMARK 620 N 1 2 3 4 5 6 DBREF 5ELD A 1 103 UNP Q57193 Q57193_VIBCL 22 124 DBREF 5ELD B 1 103 UNP Q57193 Q57193_VIBCL 22 124 DBREF 5ELD C 1 103 UNP Q57193 Q57193_VIBCL 22 124 DBREF 5ELD D 1 103 UNP Q57193 Q57193_VIBCL 22 124 DBREF 5ELD E 1 103 UNP Q57193 Q57193_VIBCL 22 124 SEQRES 1 A 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 A 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 A 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 A 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL SEQRES 5 A 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 A 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 A 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 A 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN SEQRES 1 B 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 B 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 B 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 B 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL SEQRES 5 B 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 B 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 B 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 B 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN SEQRES 1 C 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 C 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 C 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 C 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL SEQRES 5 C 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 C 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 C 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 C 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN SEQRES 1 D 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 D 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 D 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 D 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL SEQRES 5 D 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 D 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 D 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 D 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN SEQRES 1 E 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 E 103 ASN THR GLN ILE HIS THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 E 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 E 103 ILE THR PHE LYS ASN GLY ALA THR PHE GLN VAL GLU VAL SEQRES 5 E 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 E 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 E 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 E 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN HET NDG F 1 30 HET GAL F 2 22 HET FUC F 3 20 HET A2G F 4 28 HET FUC F 5 20 HET NDG G 1 30 HET GAL G 2 22 HET FUC G 3 20 HET A2G G 4 28 HET FUC G 5 20 HET NDG H 1 30 HET GAL H 2 22 HET FUC H 3 20 HET A2G H 4 28 HET FUC H 5 20 HET NDG I 1 15 HET GAL I 2 11 HET FUC I 3 10 HET A2G I 4 14 HET FUC I 5 10 HET PEG A 201 7 HET GAL A 202 12 HET NA B 201 1 HET MES C 201 12 HET PGE C 202 10 HET GAL C 203 12 HET PEG D 201 7 HET PGE D 202 10 HET PGE E 201 10 HET GAL E 202 12 HET GLA E 203 12 HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM NA SODIUM ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM PGE TRIETHYLENE GLYCOL HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE FORMUL 6 NDG 4(C8 H15 N O6) FORMUL 6 GAL 7(C6 H12 O6) FORMUL 6 FUC 8(C6 H12 O5) FORMUL 6 A2G 4(C8 H15 N O6) FORMUL 10 PEG 2(C4 H10 O3) FORMUL 12 NA NA 1+ FORMUL 13 MES C6 H13 N O4 S FORMUL 14 PGE 3(C6 H14 O4) FORMUL 20 GLA C6 H12 O6 FORMUL 21 HOH *610(H2 O) HELIX 1 AA1 ASN A 4 ALA A 10 1 7 HELIX 2 AA2 SER A 60 GLU A 79 1 20 HELIX 3 AA3 ASN B 4 ALA B 10 1 7 HELIX 4 AA4 SER B 60 GLU B 79 1 20 HELIX 5 AA5 ASN C 4 ALA C 10 1 7 HELIX 6 AA6 ILE C 58 SER C 60 5 3 HELIX 7 AA7 GLN C 61 GLU C 79 1 19 HELIX 8 AA8 ASN D 4 GLU D 11 1 8 HELIX 9 AA9 SER D 60 GLU D 79 1 20 HELIX 10 AB1 ASN E 4 ALA E 10 1 7 HELIX 11 AB2 ILE E 58 THR E 78 1 21 SHEET 1 A 3 THR A 15 THR A 19 0 SHEET 2 A 3 VAL A 82 TRP A 88 -1 SHEET 3 A 3 ALA A 98 MET A 101 -1 SHEET 1 B 3 SER A 26 GLU A 29 0 SHEET 2 B 3 ALA A 38 THR A 41 -1 SHEET 3 B 3 THR A 47 VAL A 50 -1 SHEET 1 C 3 THR B 15 THR B 19 0 SHEET 2 C 3 VAL B 82 TRP B 88 -1 SHEET 3 C 3 ALA B 98 MET B 101 -1 SHEET 1 D 3 SER B 26 SER B 30 0 SHEET 2 D 3 MET B 37 THR B 41 -1 SHEET 3 D 3 THR B 47 VAL B 50 -1 SHEET 1 E 3 THR C 15 THR C 19 0 SHEET 2 E 3 VAL C 82 TRP C 88 -1 SHEET 3 E 3 ALA C 98 MET C 101 -1 SHEET 1 F 3 SER C 26 SER C 30 0 SHEET 2 F 3 MET C 37 THR C 41 -1 SHEET 3 F 3 THR C 47 VAL C 50 -1 SHEET 1 G 3 THR D 15 THR D 19 0 SHEET 2 G 3 VAL D 82 TRP D 88 -1 SHEET 3 G 3 ALA D 98 MET D 101 -1 SHEET 1 H 3 SER D 26 SER D 30 0 SHEET 2 H 3 MET D 37 THR D 41 -1 SHEET 3 H 3 THR D 47 VAL D 50 -1 SHEET 1 I 3 THR E 15 THR E 19 0 SHEET 2 I 3 VAL E 82 TRP E 88 -1 SHEET 3 I 3 ALA E 98 MET E 101 -1 SHEET 1 J 3 SER E 26 GLU E 29 0 SHEET 2 J 3 ALA E 38 THR E 41 -1 SHEET 3 J 3 THR E 47 VAL E 50 -1 SSBOND 1 CYS A 9 CYS A 86 1555 1555 2.04 SSBOND 2 CYS B 9 CYS B 86 1555 1555 2.03 SSBOND 3 CYS C 9 CYS C 86 1555 1555 2.04 SSBOND 4 CYS D 9 CYS D 86 1555 1555 2.05 SSBOND 5 CYS E 9 CYS E 86 1555 1555 2.05 LINK O4 ANDG F 1 C1 AGAL F 2 1555 1555 1.45 LINK O4 BNDG F 1 C1 BGAL F 2 1555 1555 1.45 LINK O3 ANDG F 1 C1 AFUC F 5 1555 1555 1.46 LINK O3 BNDG F 1 C1 BFUC F 5 1555 1555 1.46 LINK O2 AGAL F 2 C1 AFUC F 3 1555 1555 1.42 LINK O2 BGAL F 2 C1 BFUC F 3 1555 1555 1.41 LINK O3 AGAL F 2 C1 AA2G F 4 1555 1555 1.42 LINK O3 BGAL F 2 C1 BA2G F 4 1555 1555 1.46 LINK O4 ANDG G 1 C1 AGAL G 2 1555 1555 1.44 LINK O4 BNDG G 1 C1 BGAL G 2 1555 1555 1.43 LINK O3 ANDG G 1 C1 AFUC G 5 1555 1555 1.41 LINK O3 BNDG G 1 C1 BFUC G 5 1555 1555 1.49 LINK O2 AGAL G 2 C1 AFUC G 3 1555 1555 1.43 LINK O2 BGAL G 2 C1 BFUC G 3 1555 1555 1.45 LINK O3 AGAL G 2 C1 AA2G G 4 1555 1555 1.45 LINK O3 BGAL G 2 C1 BA2G G 4 1555 1555 1.47 LINK O4 ANDG H 1 C1 AGAL H 2 1555 1555 1.44 LINK O4 BNDG H 1 C1 BGAL H 2 1555 1555 1.44 LINK O3 ANDG H 1 C1 AFUC H 5 1555 1555 1.48 LINK O3 BNDG H 1 C1 BFUC H 5 1555 1555 1.48 LINK O2 AGAL H 2 C1 AFUC H 3 1555 1555 1.43 LINK O2 BGAL H 2 C1 BFUC H 3 1555 1555 1.44 LINK O3 AGAL H 2 C1 AA2G H 4 1555 1555 1.45 LINK O3 BGAL H 2 C1 BA2G H 4 1555 1555 1.43 LINK O4 NDG I 1 C1 GAL I 2 1555 1555 1.46 LINK O3 NDG I 1 C1 FUC I 5 1555 1555 1.49 LINK O2 GAL I 2 C1 FUC I 3 1555 1555 1.46 LINK O3 GAL I 2 C1 A2G I 4 1555 1555 1.47 LINK OE1AGLU A 79 NA NA B 201 1555 4445 2.18 LINK OE1BGLU A 79 NA NA B 201 1555 4445 2.49 LINK O HOH A 399 NA NA B 201 4545 1555 2.42 LINK O CYS B 9 NA NA B 201 1555 1555 2.54 LINK O TYR B 12 NA NA B 201 1555 1555 2.30 LINK OG1 THR B 15 NA NA B 201 1555 1555 2.26 LINK NA NA B 201 O HOH B 366 1555 1555 2.36 CISPEP 1 THR A 92 PRO A 93 0 -12.60 CISPEP 2 THR B 92 PRO B 93 0 1.69 CISPEP 3 THR B 92 PRO B 93 0 -24.45 CISPEP 4 THR C 92 PRO C 93 0 -8.26 CISPEP 5 THR D 92 PRO D 93 0 -15.19 CISPEP 6 THR E 92 PRO E 93 0 -11.35 CRYST1 69.700 69.806 134.735 90.00 90.00 90.00 P 21 21 21 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014347 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014325 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007422 0.00000