HEADER RNA BINDING PROTEIN 05-NOV-15 5ELT TITLE STRUCTURE OF THE QUA1-KH DOMAIN OF T-STAR IN COMPLEX WITH UAAU RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: KH DOMAIN-CONTAINING, RNA-BINDING, SIGNAL TRANSDUCTION- COMPND 3 ASSOCIATED PROTEIN 3; COMPND 4 CHAIN: B, A; COMPND 5 FRAGMENT: RNA BINDING PROTEIN, UNP RESIDUES 1-160; COMPND 6 SYNONYM: RNA-BINDING PROTEIN T-STAR,SAM68-LIKE MAMMALIAN PROTEIN 2, COMPND 7 SLM-2,SAM68-LIKE PHOSPHOTYROSINE PROTEIN; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: N-TERMINUS GA RESIDUES FROM TAG.; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: RNA (5'-R(P*UP*AP*AP*U)-3'); COMPND 12 CHAIN: E, F; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KHDRBS3, SALP, SLM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PLEICS 03; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS PROTEIN - RNA COMPLEXES STAR PROTEIN ALTERNATIVE SPLICING KH DOMAIN, KEYWDS 2 RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.DOMINGUEZ,M.FERACCI REVDAT 4 10-JAN-24 5ELT 1 REMARK REVDAT 3 13-SEP-17 5ELT 1 REMARK REVDAT 2 27-JAN-16 5ELT 1 JRNL REVDAT 1 13-JAN-16 5ELT 0 JRNL AUTH M.FERACCI,J.N.FOOT,S.N.GRELLSCHEID,M.DANILENKO,R.STEHLE, JRNL AUTH 2 O.GONCHAR,H.S.KANG,C.DALGLIESH,N.H.MEYER,Y.LIU,A.LAHAT, JRNL AUTH 3 M.SATTLER,I.C.EPERON,D.J.ELLIOTT,C.DOMINGUEZ JRNL TITL STRUCTURAL BASIS OF RNA RECOGNITION AND DIMERIZATION BY THE JRNL TITL 2 STAR PROTEINS T-STAR AND SAM68. JRNL REF NAT COMMUN V. 7 10355 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 26758068 JRNL DOI 10.1038/NCOMMS10355 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 23556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.5601 - 4.2595 0.99 2849 159 0.1664 0.2030 REMARK 3 2 4.2595 - 3.3810 1.00 2822 146 0.1848 0.2583 REMARK 3 3 3.3810 - 2.9537 1.00 2826 140 0.2277 0.2900 REMARK 3 4 2.9537 - 2.6836 1.00 2756 170 0.2470 0.2735 REMARK 3 5 2.6836 - 2.4913 1.00 2787 141 0.2446 0.3041 REMARK 3 6 2.4913 - 2.3444 1.00 2789 138 0.2515 0.3316 REMARK 3 7 2.3444 - 2.2270 1.00 2793 124 0.2839 0.3205 REMARK 3 8 2.2270 - 2.1300 1.00 2788 128 0.2881 0.3544 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 2648 REMARK 3 ANGLE : 1.498 3576 REMARK 3 CHIRALITY : 0.079 398 REMARK 3 PLANARITY : 0.010 428 REMARK 3 DIHEDRAL : 18.876 1632 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -1 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.9705 -4.9500 3.7669 REMARK 3 T TENSOR REMARK 3 T11: 0.3186 T22: 0.6874 REMARK 3 T33: 0.6778 T12: 0.0757 REMARK 3 T13: -0.1117 T23: 0.0845 REMARK 3 L TENSOR REMARK 3 L11: 9.7038 L22: 3.7784 REMARK 3 L33: 5.3023 L12: 0.5841 REMARK 3 L13: -2.2601 L23: -0.3411 REMARK 3 S TENSOR REMARK 3 S11: 0.1670 S12: 0.5970 S13: 0.0489 REMARK 3 S21: -0.4193 S22: -0.2398 S23: -0.4056 REMARK 3 S31: -0.3688 S32: 0.2802 S33: 0.0382 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.3675 0.6963 10.9524 REMARK 3 T TENSOR REMARK 3 T11: 0.1612 T22: 0.9242 REMARK 3 T33: 0.7898 T12: 0.0451 REMARK 3 T13: -0.2909 T23: 0.1902 REMARK 3 L TENSOR REMARK 3 L11: 2.5199 L22: 1.0710 REMARK 3 L33: 1.8138 L12: -0.4466 REMARK 3 L13: -0.7233 L23: -0.2865 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: -0.4647 S13: 0.7524 REMARK 3 S21: 0.1447 S22: 0.1139 S23: -0.2752 REMARK 3 S31: -0.1845 S32: 0.3037 S33: 0.4237 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 36 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.3751 7.6778 6.8555 REMARK 3 T TENSOR REMARK 3 T11: 0.5493 T22: 0.6228 REMARK 3 T33: 0.5123 T12: 0.1104 REMARK 3 T13: -0.0319 T23: 0.0760 REMARK 3 L TENSOR REMARK 3 L11: 5.4293 L22: 4.9390 REMARK 3 L33: 0.5984 L12: 5.1337 REMARK 3 L13: -0.5458 L23: -0.7321 REMARK 3 S TENSOR REMARK 3 S11: -0.3391 S12: -0.2563 S13: -0.8830 REMARK 3 S21: -0.5597 S22: 0.1424 S23: 0.2297 REMARK 3 S31: -0.4353 S32: -0.2642 S33: -0.0438 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.4818 22.5116 30.9125 REMARK 3 T TENSOR REMARK 3 T11: 0.7328 T22: 0.5964 REMARK 3 T33: 0.3704 T12: -0.0702 REMARK 3 T13: -0.0948 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 2.4100 L22: 3.8509 REMARK 3 L33: 4.8415 L12: -1.0877 REMARK 3 L13: -0.5589 L23: 1.2251 REMARK 3 S TENSOR REMARK 3 S11: 0.1302 S12: -0.2436 S13: 0.0665 REMARK 3 S21: 0.1879 S22: -0.2337 S23: 0.1536 REMARK 3 S31: -1.0612 S32: -0.0179 S33: 0.1153 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.1153 30.6443 35.3466 REMARK 3 T TENSOR REMARK 3 T11: 1.1025 T22: 1.4607 REMARK 3 T33: 1.3360 T12: 0.3711 REMARK 3 T13: 0.3421 T23: 0.0435 REMARK 3 L TENSOR REMARK 3 L11: 3.3812 L22: 3.3739 REMARK 3 L33: 3.7499 L12: -2.5411 REMARK 3 L13: -2.1209 L23: -0.2908 REMARK 3 S TENSOR REMARK 3 S11: 0.0404 S12: 0.0562 S13: 0.0108 REMARK 3 S21: 0.7357 S22: 0.1057 S23: 1.1507 REMARK 3 S31: -0.7444 S32: -1.3814 S33: -0.1392 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.2946 25.2783 29.0688 REMARK 3 T TENSOR REMARK 3 T11: 0.9485 T22: 1.5621 REMARK 3 T33: 1.3678 T12: 0.1346 REMARK 3 T13: -0.0553 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 2.4850 L22: 2.4236 REMARK 3 L33: 2.2402 L12: -0.8765 REMARK 3 L13: -0.2472 L23: -2.0803 REMARK 3 S TENSOR REMARK 3 S11: 0.4598 S12: 0.5527 S13: 0.4115 REMARK 3 S21: 0.1677 S22: -0.2225 S23: 1.8666 REMARK 3 S31: -0.4424 S32: -1.3697 S33: -0.1050 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 128 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 78.4347 15.5962 24.6553 REMARK 3 T TENSOR REMARK 3 T11: 0.4996 T22: 0.4365 REMARK 3 T33: 0.3953 T12: -0.0873 REMARK 3 T13: -0.1197 T23: 0.0798 REMARK 3 L TENSOR REMARK 3 L11: 2.6996 L22: 7.3150 REMARK 3 L33: 8.5605 L12: -0.8504 REMARK 3 L13: -2.6663 L23: 5.1746 REMARK 3 S TENSOR REMARK 3 S11: 0.1820 S12: -0.2797 S13: -0.1397 REMARK 3 S21: 0.2512 S22: 0.2087 S23: -0.4421 REMARK 3 S31: -0.6221 S32: 0.4892 S33: -0.3334 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.1011 -9.9239 21.7540 REMARK 3 T TENSOR REMARK 3 T11: 0.4774 T22: 1.2565 REMARK 3 T33: 0.7154 T12: -0.0406 REMARK 3 T13: -0.1086 T23: 0.3380 REMARK 3 L TENSOR REMARK 3 L11: 9.8619 L22: 4.8767 REMARK 3 L33: 5.8790 L12: 1.6234 REMARK 3 L13: -1.1876 L23: 2.5068 REMARK 3 S TENSOR REMARK 3 S11: 0.3872 S12: -2.0506 S13: -0.7346 REMARK 3 S21: 0.8952 S22: -0.3286 S23: 0.0521 REMARK 3 S31: 0.4650 S32: -0.0764 S33: -0.2143 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.0195 -10.1373 14.1784 REMARK 3 T TENSOR REMARK 3 T11: 0.2276 T22: 1.0065 REMARK 3 T33: 0.8433 T12: 0.1152 REMARK 3 T13: -0.1253 T23: 0.3454 REMARK 3 L TENSOR REMARK 3 L11: 4.6578 L22: 2.8240 REMARK 3 L33: 3.1204 L12: -1.1050 REMARK 3 L13: -0.5464 L23: 1.0093 REMARK 3 S TENSOR REMARK 3 S11: 0.0756 S12: -1.2884 S13: -0.6133 REMARK 3 S21: 0.3058 S22: 0.1771 S23: -0.3519 REMARK 3 S31: 0.2705 S32: 0.5002 S33: -0.1461 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.7180 5.9870 32.9822 REMARK 3 T TENSOR REMARK 3 T11: 0.9266 T22: 0.7054 REMARK 3 T33: 0.5175 T12: -0.1087 REMARK 3 T13: -0.0554 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 0.2362 L22: 2.0221 REMARK 3 L33: 2.2005 L12: 0.1880 REMARK 3 L13: -0.3692 L23: 0.0989 REMARK 3 S TENSOR REMARK 3 S11: 0.0653 S12: -0.5472 S13: 0.6032 REMARK 3 S21: 0.7326 S22: -0.2851 S23: 0.4526 REMARK 3 S31: -0.0197 S32: -0.2870 S33: -0.0573 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.9353 -3.1162 5.4082 REMARK 3 T TENSOR REMARK 3 T11: 0.1731 T22: 0.5709 REMARK 3 T33: 0.4407 T12: -0.0404 REMARK 3 T13: -0.0842 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: 1.8917 L22: 3.8825 REMARK 3 L33: 4.9914 L12: 0.9261 REMARK 3 L13: -0.2480 L23: 0.6495 REMARK 3 S TENSOR REMARK 3 S11: 0.0454 S12: 0.5131 S13: 0.0305 REMARK 3 S21: -0.2535 S22: -0.0303 S23: 0.0359 REMARK 3 S31: -0.2314 S32: -0.0936 S33: 0.0948 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.5374 -9.5757 15.3605 REMARK 3 T TENSOR REMARK 3 T11: 0.1227 T22: 0.7872 REMARK 3 T33: 0.4707 T12: -0.0281 REMARK 3 T13: -0.1342 T23: 0.0789 REMARK 3 L TENSOR REMARK 3 L11: 2.9107 L22: 1.4008 REMARK 3 L33: 0.7083 L12: 0.4178 REMARK 3 L13: 0.5623 L23: -0.0102 REMARK 3 S TENSOR REMARK 3 S11: 0.0330 S12: -0.0816 S13: -0.1762 REMARK 3 S21: 0.3355 S22: -0.5022 S23: 0.0164 REMARK 3 S31: 0.2580 S32: 0.6285 S33: -0.0428 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.5682 -15.3329 2.8831 REMARK 3 T TENSOR REMARK 3 T11: 0.1943 T22: 0.6552 REMARK 3 T33: 0.7796 T12: 0.0899 REMARK 3 T13: -0.1906 T23: -0.1941 REMARK 3 L TENSOR REMARK 3 L11: 3.4207 L22: 2.5144 REMARK 3 L33: 2.3942 L12: -0.4905 REMARK 3 L13: 0.6195 L23: 0.0557 REMARK 3 S TENSOR REMARK 3 S11: 0.0577 S12: 0.4373 S13: -0.6012 REMARK 3 S21: -0.2572 S22: -0.1002 S23: 0.1907 REMARK 3 S31: 0.3834 S32: -0.1464 S33: 0.1226 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.6422 -6.4207 13.4208 REMARK 3 T TENSOR REMARK 3 T11: 0.0467 T22: 0.6471 REMARK 3 T33: 0.5061 T12: 0.0082 REMARK 3 T13: -0.0784 T23: -0.1299 REMARK 3 L TENSOR REMARK 3 L11: 2.9745 L22: 5.2898 REMARK 3 L33: 1.7334 L12: 2.4881 REMARK 3 L13: 1.5382 L23: 0.3871 REMARK 3 S TENSOR REMARK 3 S11: 0.3968 S12: 0.0836 S13: -0.0759 REMARK 3 S21: 0.6526 S22: -0.5478 S23: 0.9451 REMARK 3 S31: 0.1886 S32: -0.6662 S33: 0.1977 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 82.4008 2.3468 14.2154 REMARK 3 T TENSOR REMARK 3 T11: 0.3467 T22: 0.5350 REMARK 3 T33: 0.3893 T12: -0.1012 REMARK 3 T13: -0.1035 T23: 0.0633 REMARK 3 L TENSOR REMARK 3 L11: 3.4803 L22: 6.7893 REMARK 3 L33: 4.6434 L12: -0.6693 REMARK 3 L13: -1.5541 L23: 4.9730 REMARK 3 S TENSOR REMARK 3 S11: 0.2277 S12: 0.1341 S13: 0.0435 REMARK 3 S21: 0.0395 S22: 0.1923 S23: -0.6199 REMARK 3 S31: -0.5891 S32: 1.1728 S33: -0.3130 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 0 THROUGH 3 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.7234 32.9295 32.0001 REMARK 3 T TENSOR REMARK 3 T11: 1.4064 T22: 0.6263 REMARK 3 T33: 0.6463 T12: 0.1519 REMARK 3 T13: -0.2163 T23: -0.1323 REMARK 3 L TENSOR REMARK 3 L11: 8.7427 L22: 1.9736 REMARK 3 L33: 4.9388 L12: -2.6006 REMARK 3 L13: -1.3398 L23: 2.6257 REMARK 3 S TENSOR REMARK 3 S11: 0.5227 S12: -0.2046 S13: 0.7816 REMARK 3 S21: -0.2527 S22: -0.5795 S23: 0.1003 REMARK 3 S31: -1.1109 S32: -1.9768 S33: 0.2663 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): 77.5049 -16.1147 9.2405 REMARK 3 T TENSOR REMARK 3 T11: 0.2437 T22: 0.5974 REMARK 3 T33: 0.5649 T12: 0.0713 REMARK 3 T13: -0.0764 T23: -0.0603 REMARK 3 L TENSOR REMARK 3 L11: 1.4570 L22: 6.1928 REMARK 3 L33: 0.1654 L12: 2.0230 REMARK 3 L13: 0.4851 L23: 0.8050 REMARK 3 S TENSOR REMARK 3 S11: 0.4372 S12: 0.1196 S13: -0.8244 REMARK 3 S21: 0.2450 S22: -0.6368 S23: 0.3307 REMARK 3 S31: 0.6572 S32: -0.2180 S33: 0.0604 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ELT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.6, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23574 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 54.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.62300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5EL3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MIB, PEG 3350, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.03000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 37 REMARK 465 GLU B 38 REMARK 465 GLY B 39 REMARK 465 LYS B 40 REMARK 465 ASP B 41 REMARK 465 GLU B 42 REMARK 465 PRO B 157 REMARK 465 ASP B 158 REMARK 465 TYR B 159 REMARK 465 ASN B 160 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 35 REMARK 465 LYS A 36 REMARK 465 GLY A 37 REMARK 465 GLU A 38 REMARK 465 GLY A 39 REMARK 465 LYS A 40 REMARK 465 ASP A 41 REMARK 465 GLU A 42 REMARK 465 GLU A 43 REMARK 465 TYR A 159 REMARK 465 ASN A 160 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 55 O VAL B 133 2.11 REMARK 500 O ASP A 47 NZ LYS A 52 2.12 REMARK 500 OD2 ASP A 17 OG SER A 19 2.14 REMARK 500 NZ LYS B 100 O ASP B 125 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O3' U E 3 O2' U F 4 1565 2.02 REMARK 500 O2' U E 3 O3' U F 4 1565 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 139 CD GLU B 139 OE1 -0.071 REMARK 500 A F 2 N3 A F 2 C4 -0.046 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 17 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 LEU B 56 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 LYS B 100 CD - CE - NZ ANGL. DEV. = -19.4 DEGREES REMARK 500 LYS A 52 CD - CE - NZ ANGL. DEV. = -17.5 DEGREES REMARK 500 A F 2 C2 - N3 - C4 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 4 -40.50 -130.90 REMARK 500 LYS B 69 30.01 -150.09 REMARK 500 ARG B 80 18.93 49.28 REMARK 500 ALA B 107 -71.15 -55.97 REMARK 500 SER B 115 -89.92 55.35 REMARK 500 GLU B 117 73.60 57.67 REMARK 500 ALA B 118 -49.57 -137.70 REMARK 500 LEU B 123 36.55 -97.46 REMARK 500 LYS B 153 -8.71 -57.83 REMARK 500 ARG A 80 19.19 58.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 43 LYS B 44 -141.55 REMARK 500 LYS B 69 PHE B 70 148.75 REMARK 500 ARG B 113 LYS B 114 146.07 REMARK 500 REMARK 500 REMARK: NULL DBREF 5ELT B 1 160 UNP O75525 KHDR3_HUMAN 1 160 DBREF 5ELT A 1 160 UNP O75525 KHDR3_HUMAN 1 160 DBREF 5ELT E 0 3 PDB 5ELT 5ELT 0 3 DBREF 5ELT F 1 4 PDB 5ELT 5ELT 1 4 SEQADV 5ELT GLY B -1 UNP O75525 EXPRESSION TAG SEQADV 5ELT ALA B 0 UNP O75525 EXPRESSION TAG SEQADV 5ELT GLY A -1 UNP O75525 EXPRESSION TAG SEQADV 5ELT ALA A 0 UNP O75525 EXPRESSION TAG SEQRES 1 B 162 GLY ALA MET GLU GLU LYS TYR LEU PRO GLU LEU MET ALA SEQRES 2 B 162 GLU LYS ASP SER LEU ASP PRO SER PHE THR HIS ALA LEU SEQRES 3 B 162 ARG LEU VAL ASN GLN GLU ILE GLU LYS PHE GLN LYS GLY SEQRES 4 B 162 GLU GLY LYS ASP GLU GLU LYS TYR ILE ASP VAL VAL ILE SEQRES 5 B 162 ASN LYS ASN MET LYS LEU GLY GLN LYS VAL LEU ILE PRO SEQRES 6 B 162 VAL LYS GLN PHE PRO LYS PHE ASN PHE VAL GLY LYS LEU SEQRES 7 B 162 LEU GLY PRO ARG GLY ASN SER LEU LYS ARG LEU GLN GLU SEQRES 8 B 162 GLU THR LEU THR LYS MET SER ILE LEU GLY LYS GLY SER SEQRES 9 B 162 MET ARG ASP LYS ALA LYS GLU GLU GLU LEU ARG LYS SER SEQRES 10 B 162 GLY GLU ALA LYS TYR PHE HIS LEU ASN ASP ASP LEU HIS SEQRES 11 B 162 VAL LEU ILE GLU VAL PHE ALA PRO PRO ALA GLU ALA TYR SEQRES 12 B 162 ALA ARG MET GLY HIS ALA LEU GLU GLU ILE LYS LYS PHE SEQRES 13 B 162 LEU ILE PRO ASP TYR ASN SEQRES 1 A 162 GLY ALA MET GLU GLU LYS TYR LEU PRO GLU LEU MET ALA SEQRES 2 A 162 GLU LYS ASP SER LEU ASP PRO SER PHE THR HIS ALA LEU SEQRES 3 A 162 ARG LEU VAL ASN GLN GLU ILE GLU LYS PHE GLN LYS GLY SEQRES 4 A 162 GLU GLY LYS ASP GLU GLU LYS TYR ILE ASP VAL VAL ILE SEQRES 5 A 162 ASN LYS ASN MET LYS LEU GLY GLN LYS VAL LEU ILE PRO SEQRES 6 A 162 VAL LYS GLN PHE PRO LYS PHE ASN PHE VAL GLY LYS LEU SEQRES 7 A 162 LEU GLY PRO ARG GLY ASN SER LEU LYS ARG LEU GLN GLU SEQRES 8 A 162 GLU THR LEU THR LYS MET SER ILE LEU GLY LYS GLY SER SEQRES 9 A 162 MET ARG ASP LYS ALA LYS GLU GLU GLU LEU ARG LYS SER SEQRES 10 A 162 GLY GLU ALA LYS TYR PHE HIS LEU ASN ASP ASP LEU HIS SEQRES 11 A 162 VAL LEU ILE GLU VAL PHE ALA PRO PRO ALA GLU ALA TYR SEQRES 12 A 162 ALA ARG MET GLY HIS ALA LEU GLU GLU ILE LYS LYS PHE SEQRES 13 A 162 LEU ILE PRO ASP TYR ASN SEQRES 1 E 4 U A A U SEQRES 1 F 4 U A A U FORMUL 5 HOH *11(H2 O) HELIX 1 AA1 GLY B -1 LYS B 4 1 6 HELIX 2 AA2 LYS B 4 LEU B 16 1 13 HELIX 3 AA3 PHE B 20 LYS B 36 1 17 HELIX 4 AA4 ASN B 71 GLY B 78 1 8 HELIX 5 AA5 GLY B 81 LEU B 92 1 12 HELIX 6 AA6 ASP B 105 LEU B 112 1 8 HELIX 7 AA7 TYR B 120 ASP B 125 5 6 HELIX 8 AA8 PRO B 136 LYS B 153 1 18 HELIX 9 AA9 TYR A 5 LEU A 16 1 12 HELIX 10 AB1 PHE A 20 LYS A 33 1 14 HELIX 11 AB2 ASN A 71 GLY A 78 1 8 HELIX 12 AB3 GLY A 81 LEU A 92 1 12 HELIX 13 AB4 ASP A 105 SER A 115 1 11 HELIX 14 AB5 GLY A 116 ASP A 125 5 10 HELIX 15 AB6 PRO A 136 ILE A 156 1 21 SHEET 1 AA1 4 TYR B 45 ILE B 46 0 SHEET 2 AA1 4 MET A 54 LEU A 61 1 O LEU A 61 N ILE B 46 SHEET 3 AA1 4 HIS A 128 ALA A 135 -1 O VAL A 133 N LEU A 56 SHEET 4 AA1 4 LYS A 94 LEU A 98 -1 N SER A 96 O LEU A 130 SHEET 1 AA2 4 LYS B 94 LEU B 98 0 SHEET 2 AA2 4 HIS B 128 ALA B 135 -1 O HIS B 128 N LEU B 98 SHEET 3 AA2 4 MET B 54 LEU B 61 -1 N VAL B 60 O VAL B 129 SHEET 4 AA2 4 ILE A 46 ASP A 47 1 O ILE A 46 N LEU B 61 CRYST1 54.880 46.060 83.980 90.00 96.36 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018222 0.000000 0.002031 0.00000 SCALE2 0.000000 0.021711 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011981 0.00000