HEADER ALLERGEN 05-NOV-15 5EM0 TITLE CRYSTAL STRUCTURE OF MUGWORT ALLERGEN ART V 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLLEN ALLERGEN ART V 4.01; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROFILIN-1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTEMISIA VULGARIS; SOURCE 3 ORGANISM_COMMON: MUGWORT; SOURCE 4 ORGANISM_TAXID: 4220; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS ALLERGEN EXPDTA X-RAY DIFFRACTION AUTHOR L.R.OFFERMANN,M.L.PERDUE,M.CHRUSZCZ REVDAT 3 27-SEP-23 5EM0 1 JRNL REMARK LINK REVDAT 2 10-AUG-16 5EM0 1 JRNL REVDAT 1 08-JUN-16 5EM0 0 JRNL AUTH L.R.OFFERMANN,C.R.SCHLACHTER,M.L.PERDUE,K.A.MAJOREK,J.Z.HE, JRNL AUTH 2 W.T.BOOTH,J.GARRETT,K.KOWAL,M.CHRUSZCZ JRNL TITL STRUCTURAL, FUNCTIONAL, AND IMMUNOLOGICAL CHARACTERIZATION JRNL TITL 2 OF PROFILIN PANALLERGENS AMB A 8, ART V 4, AND BET V 2. JRNL REF J.BIOL.CHEM. V. 291 15447 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27231348 JRNL DOI 10.1074/JBC.M116.733659 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 42383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2276 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2886 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.61 REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : -1.61000 REMARK 3 B33 (A**2) : 1.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.034 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.037 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.028 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.251 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1055 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1000 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1428 ; 2.064 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2316 ; 0.904 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 139 ; 5.743 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 43 ;36.884 ;25.814 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 172 ;10.480 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;40.689 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 152 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1213 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 225 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 11 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5547 -6.6108 10.0260 REMARK 3 T TENSOR REMARK 3 T11: 0.0366 T22: 0.0495 REMARK 3 T33: 0.0050 T12: 0.0064 REMARK 3 T13: 0.0004 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.4242 L22: 3.2871 REMARK 3 L33: 0.0645 L12: -0.8841 REMARK 3 L13: -0.1079 L23: 0.4551 REMARK 3 S TENSOR REMARK 3 S11: -0.0491 S12: -0.0212 S13: -0.0013 REMARK 3 S21: 0.1490 S22: 0.0416 S23: 0.0431 REMARK 3 S31: 0.0192 S32: 0.0087 S33: 0.0076 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9762 5.7764 12.8556 REMARK 3 T TENSOR REMARK 3 T11: 0.0256 T22: 0.0632 REMARK 3 T33: 0.0010 T12: 0.0085 REMARK 3 T13: 0.0045 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.5712 L22: 2.5264 REMARK 3 L33: 1.7344 L12: -0.0759 REMARK 3 L13: -0.2634 L23: 1.2016 REMARK 3 S TENSOR REMARK 3 S11: -0.0043 S12: -0.0222 S13: 0.0082 REMARK 3 S21: 0.1136 S22: 0.0134 S23: 0.0101 REMARK 3 S31: -0.0039 S32: -0.0718 S33: -0.0091 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9330 -3.2738 0.6333 REMARK 3 T TENSOR REMARK 3 T11: 0.0203 T22: 0.0469 REMARK 3 T33: 0.0174 T12: -0.0002 REMARK 3 T13: 0.0005 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.8153 L22: 0.3861 REMARK 3 L33: 0.1060 L12: -0.4369 REMARK 3 L13: -0.0267 L23: -0.0115 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: 0.0196 S13: -0.0304 REMARK 3 S21: 0.0023 S22: 0.0022 S23: 0.0043 REMARK 3 S31: -0.0066 S32: -0.0004 S33: -0.0024 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 58 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2741 1.2982 -8.7437 REMARK 3 T TENSOR REMARK 3 T11: 0.0297 T22: 0.0563 REMARK 3 T33: 0.0147 T12: 0.0042 REMARK 3 T13: 0.0070 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.2091 L22: 0.3560 REMARK 3 L33: 0.5765 L12: 0.2170 REMARK 3 L13: 0.0277 L23: 0.2702 REMARK 3 S TENSOR REMARK 3 S11: 0.0052 S12: 0.0278 S13: -0.0388 REMARK 3 S21: -0.0207 S22: 0.0122 S23: -0.0515 REMARK 3 S31: -0.0026 S32: 0.0214 S33: -0.0174 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 59 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6746 10.1772 -9.6465 REMARK 3 T TENSOR REMARK 3 T11: 0.0358 T22: 0.0498 REMARK 3 T33: 0.0077 T12: -0.0020 REMARK 3 T13: 0.0036 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.5029 L22: 0.5446 REMARK 3 L33: 0.0929 L12: -0.1311 REMARK 3 L13: 0.1955 L23: 0.0373 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: 0.0447 S13: 0.0022 REMARK 3 S21: -0.0490 S22: 0.0065 S23: -0.0107 REMARK 3 S31: -0.0145 S32: 0.0142 S33: -0.0027 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8107 12.2593 -0.7194 REMARK 3 T TENSOR REMARK 3 T11: 0.0310 T22: 0.0470 REMARK 3 T33: 0.0172 T12: -0.0035 REMARK 3 T13: -0.0069 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.2970 L22: 0.4139 REMARK 3 L33: 0.2448 L12: -0.0511 REMARK 3 L13: 0.3715 L23: 0.1176 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: -0.0071 S13: -0.0123 REMARK 3 S21: 0.0251 S22: 0.0090 S23: -0.0245 REMARK 3 S31: -0.0448 S32: -0.0107 S33: -0.0026 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 90 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5429 4.8369 6.0328 REMARK 3 T TENSOR REMARK 3 T11: 0.0241 T22: 0.0457 REMARK 3 T33: 0.0181 T12: 0.0001 REMARK 3 T13: -0.0028 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.5230 L22: 0.0444 REMARK 3 L33: 0.2155 L12: -0.1512 REMARK 3 L13: 0.0758 L23: -0.0162 REMARK 3 S TENSOR REMARK 3 S11: -0.0208 S12: -0.0150 S13: 0.0290 REMARK 3 S21: 0.0069 S22: 0.0100 S23: -0.0085 REMARK 3 S31: -0.0183 S32: 0.0174 S33: 0.0108 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5EM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215137. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44768 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 36.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.72400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1CQA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 8.5, 1.3 M SODIUM REMARK 280 CITRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 29.05350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.59000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.05350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.59000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 477 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 479 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 397 O HOH A 397 2555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 8 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 CYS A 95 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 123 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 83 -47.51 -131.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 513 DISTANCE = 7.55 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 328 O REMARK 620 2 HOH A 332 O 87.9 REMARK 620 3 HOH A 404 O 95.8 80.1 REMARK 620 4 HOH A 465 O 86.1 102.6 176.8 REMARK 620 5 HOH A 487 O 80.3 153.0 77.0 100.8 REMARK 620 6 HOH A 512 O 177.5 94.6 84.7 93.4 97.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EM1 RELATED DB: PDB DBREF 5EM0 A 2 133 UNP Q8H2C9 PROF1_ARTVU 2 133 SEQADV 5EM0 GLY A -2 UNP Q8H2C9 EXPRESSION TAG SEQADV 5EM0 SER A -1 UNP Q8H2C9 EXPRESSION TAG SEQADV 5EM0 GLY A 0 UNP Q8H2C9 EXPRESSION TAG SEQRES 1 A 135 GLY SER GLY SER TRP GLN THR TYR VAL ASP ASP HIS LEU SEQRES 2 A 135 MET CME ASP ILE GLU GLY THR GLY GLN HIS LEU THR SER SEQRES 3 A 135 ALA ALA ILE PHE GLY THR ASP GLY THR VAL TRP ALA LYS SEQRES 4 A 135 SER ALA SER PHE PRO GLU PHE LYS PRO ASN GLU ILE ASP SEQRES 5 A 135 ALA ILE ILE LYS GLU PHE ASN GLU ALA GLY GLN LEU ALA SEQRES 6 A 135 PRO THR GLY LEU PHE LEU GLY GLY ALA LYS TYR MET VAL SEQRES 7 A 135 ILE GLN GLY GLU ALA GLY ALA VAL ILE ARG GLY LYS LYS SEQRES 8 A 135 GLY ALA GLY GLY ILE CYS ILE LYS LYS THR GLY GLN ALA SEQRES 9 A 135 MET VAL PHE GLY ILE TYR ASP GLU PRO VAL ALA PRO GLY SEQRES 10 A 135 GLN CYS ASN MET VAL VAL GLU ARG LEU GLY ASP TYR LEU SEQRES 11 A 135 LEU ASP GLN GLY MET MODRES 5EM0 CME A 13 CYS MODIFIED RESIDUE HET CME A 13 10 HET EPE A 201 15 HET NA A 202 1 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM NA SODIUM ION HETSYN EPE HEPES FORMUL 1 CME C5 H11 N O3 S2 FORMUL 2 EPE C8 H18 N2 O4 S FORMUL 3 NA NA 1+ FORMUL 4 HOH *213(H2 O) HELIX 1 AA1 SER A 2 LEU A 11 1 10 HELIX 2 AA2 ASP A 14 THR A 18 5 5 HELIX 3 AA3 LYS A 45 GLU A 58 1 14 HELIX 4 AA4 ALA A 113 GLN A 131 1 19 SHEET 1 AA1 7 VAL A 34 LYS A 37 0 SHEET 2 AA1 7 SER A 24 GLY A 29 -1 N ILE A 27 O ALA A 36 SHEET 3 AA1 7 ALA A 102 TYR A 108 -1 O PHE A 105 N ALA A 26 SHEET 4 AA1 7 GLY A 92 LYS A 98 -1 N LYS A 97 O VAL A 104 SHEET 5 AA1 7 VAL A 84 LYS A 89 -1 N LYS A 89 O GLY A 92 SHEET 6 AA1 7 ALA A 72 GLU A 80 -1 N MET A 75 O LYS A 88 SHEET 7 AA1 7 LEU A 67 LEU A 69 -1 N LEU A 67 O TYR A 74 SSBOND 1 CYS A 95 CYS A 117 1555 1555 2.26 LINK C MET A 12 N CME A 13 1555 1555 1.32 LINK C CME A 13 N ASP A 14 1555 1555 1.33 LINK NA NA A 202 O HOH A 328 1555 1555 2.35 LINK NA NA A 202 O HOH A 332 1555 1555 2.30 LINK NA NA A 202 O HOH A 404 1555 1555 2.46 LINK NA NA A 202 O HOH A 465 1555 1555 2.23 LINK NA NA A 202 O HOH A 487 1555 1555 2.73 LINK NA NA A 202 O HOH A 512 1555 2555 2.42 CISPEP 1 GLU A 110 PRO A 111 0 2.81 SITE 1 AC1 11 TRP A 3 TYR A 6 MET A 75 LYS A 88 SITE 2 AC1 11 LYS A 89 GLY A 90 GLN A 131 HOH A 336 SITE 3 AC1 11 HOH A 349 HOH A 400 HOH A 429 SITE 1 AC2 6 HOH A 328 HOH A 332 HOH A 404 HOH A 465 SITE 2 AC2 6 HOH A 487 HOH A 512 CRYST1 58.107 59.180 32.578 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017210 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016898 0.000000 0.00000 SCALE3 0.000000 0.000000 0.030696 0.00000