data_5EME # _entry.id 5EME # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5EME pdb_00005eme 10.2210/pdb5eme/pdb WWPDB D_1000214882 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-01-13 2 'Structure model' 1 1 2016-03-09 3 'Structure model' 1 2 2017-05-17 4 'Structure model' 2 0 2023-11-15 5 'Structure model' 2 1 2024-01-10 6 'Structure model' 2 2 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' 8 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' atom_site_anisotrop 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' struct_conn 7 5 'Structure model' pdbx_initial_refinement_model 8 6 'Structure model' pdbx_entry_details 9 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_atom_id' 2 4 'Structure model' '_atom_site.label_atom_id' 3 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 4 4 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' 7 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5EME _pdbx_database_status.recvd_initial_deposition_date 2015-11-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kiliszek, A.' 1 'Banaszak, K.' 2 'Dauter, Z.' 3 'Rypniewski, W.' 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 44 _citation.language ? _citation.page_first 1937 _citation.page_last 1943 _citation.title ;The first crystal structures of RNA-PNA duplexes and a PNA-PNA duplex containing mismatches-toward anti-sense therapy against TREDs. ; _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkv1513 _citation.pdbx_database_id_PubMed 26717983 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kiliszek, A.' 1 ? primary 'Banaszak, K.' 2 ? primary 'Dauter, Z.' 3 ? primary 'Rypniewski, W.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*CP*AP*GP*CP*AP*GP*C)-3') ; 2564.617 1 ? ? ? ? 2 polymer syn 'Antisense PNA strand' 2186.107 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 4 water nat water 18.015 105 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GCAGCAGC GCAGCAGC A ? 2 'peptide nucleic acid' no yes '(GPN)(CPN)(TPN)(GPN)(CPN)(TPN)(GPN)(CPN)' XXXXXXXX B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CHLORIDE ION' CL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 A n 1 4 G n 1 5 C n 1 6 A n 1 7 G n 1 8 C n 2 1 GPN n 2 2 CPN n 2 3 TPN n 2 4 GPN n 2 5 CPN n 2 6 TPN n 2 7 GPN n 2 8 CPN n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 8 'Homo sapiens' Human 9606 ? 2 1 sample 1 8 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CPN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE ? 'C10 H16 N5 O4 1' 270.265 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GPN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE ? 'C11 H16 N7 O4 1' 310.289 HOH non-polymer . WATER ? 'H2 O' 18.015 TPN peptide-like . 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE ? 'C11 H17 N4 O5 1' 285.276 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 A 6 6 6 A A A . n A 1 7 G 7 7 7 G G A . n A 1 8 C 8 8 8 C C A . n B 2 1 GPN 1 101 1 GPN GPN B . n B 2 2 CPN 2 102 2 CPN CPN B . n B 2 3 TPN 3 103 3 TPN TPN B . n B 2 4 GPN 4 104 4 GPN GPN B . n B 2 5 CPN 5 105 5 CPN CPN B . n B 2 6 TPN 6 106 6 TPN TPN B . n B 2 7 GPN 7 107 7 GPN GPN B . n B 2 8 CPN 8 108 8 CPN CPN B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL 1 101 1 CL CL A . D 3 CL 1 201 2 CL CL B . E 4 HOH 1 201 3 HOH HOH A . E 4 HOH 2 202 61 HOH HOH A . E 4 HOH 3 203 84 HOH HOH A . E 4 HOH 4 204 102 HOH HOH A . E 4 HOH 5 205 30 HOH HOH A . E 4 HOH 6 206 54 HOH HOH A . E 4 HOH 7 207 38 HOH HOH A . E 4 HOH 8 208 1 HOH HOH A . E 4 HOH 9 209 6 HOH HOH A . E 4 HOH 10 210 16 HOH HOH A . E 4 HOH 11 211 18 HOH HOH A . E 4 HOH 12 212 41 HOH HOH A . E 4 HOH 13 213 26 HOH HOH A . E 4 HOH 14 214 73 HOH HOH A . E 4 HOH 15 215 2 HOH HOH A . E 4 HOH 16 216 50 HOH HOH A . E 4 HOH 17 217 27 HOH HOH A . E 4 HOH 18 218 46 HOH HOH A . E 4 HOH 19 219 58 HOH HOH A . E 4 HOH 20 220 55 HOH HOH A . E 4 HOH 21 221 70 HOH HOH A . E 4 HOH 22 222 48 HOH HOH A . E 4 HOH 23 223 52 HOH HOH A . E 4 HOH 24 224 69 HOH HOH A . E 4 HOH 25 225 83 HOH HOH A . E 4 HOH 26 226 22 HOH HOH A . E 4 HOH 27 227 74 HOH HOH A . E 4 HOH 28 228 11 HOH HOH A . E 4 HOH 29 229 47 HOH HOH A . E 4 HOH 30 230 39 HOH HOH A . E 4 HOH 31 231 60 HOH HOH A . E 4 HOH 32 232 56 HOH HOH A . E 4 HOH 33 233 98 HOH HOH A . E 4 HOH 34 234 34 HOH HOH A . E 4 HOH 35 235 99 HOH HOH A . E 4 HOH 36 236 89 HOH HOH A . E 4 HOH 37 237 25 HOH HOH A . E 4 HOH 38 238 71 HOH HOH A . E 4 HOH 39 239 68 HOH HOH A . E 4 HOH 40 240 42 HOH HOH A . E 4 HOH 41 241 62 HOH HOH A . E 4 HOH 42 242 88 HOH HOH A . E 4 HOH 43 243 87 HOH HOH A . E 4 HOH 44 244 49 HOH HOH A . E 4 HOH 45 245 31 HOH HOH A . E 4 HOH 46 246 105 HOH HOH A . E 4 HOH 47 247 33 HOH HOH A . E 4 HOH 48 248 4 HOH HOH A . E 4 HOH 49 249 92 HOH HOH A . E 4 HOH 50 250 90 HOH HOH A . E 4 HOH 51 251 104 HOH HOH A . E 4 HOH 52 252 67 HOH HOH A . E 4 HOH 53 253 93 HOH HOH A . E 4 HOH 54 254 94 HOH HOH A . E 4 HOH 55 255 63 HOH HOH A . E 4 HOH 56 256 81 HOH HOH A . E 4 HOH 57 257 97 HOH HOH A . E 4 HOH 58 258 51 HOH HOH A . F 4 HOH 1 301 23 HOH HOH B . F 4 HOH 2 302 72 HOH HOH B . F 4 HOH 3 303 29 HOH HOH B . F 4 HOH 4 304 20 HOH HOH B . F 4 HOH 5 305 15 HOH HOH B . F 4 HOH 6 306 44 HOH HOH B . F 4 HOH 7 307 21 HOH HOH B . F 4 HOH 8 308 28 HOH HOH B . F 4 HOH 9 309 40 HOH HOH B . F 4 HOH 10 310 86 HOH HOH B . F 4 HOH 11 311 36 HOH HOH B . F 4 HOH 12 312 85 HOH HOH B . F 4 HOH 13 313 103 HOH HOH B . F 4 HOH 14 314 82 HOH HOH B . F 4 HOH 15 315 35 HOH HOH B . F 4 HOH 16 316 45 HOH HOH B . F 4 HOH 17 317 57 HOH HOH B . F 4 HOH 18 318 19 HOH HOH B . F 4 HOH 19 319 37 HOH HOH B . F 4 HOH 20 320 9 HOH HOH B . F 4 HOH 21 321 65 HOH HOH B . F 4 HOH 22 322 13 HOH HOH B . F 4 HOH 23 323 53 HOH HOH B . F 4 HOH 24 324 76 HOH HOH B . F 4 HOH 25 325 100 HOH HOH B . F 4 HOH 26 326 17 HOH HOH B . F 4 HOH 27 327 32 HOH HOH B . F 4 HOH 28 328 24 HOH HOH B . F 4 HOH 29 329 43 HOH HOH B . F 4 HOH 30 330 78 HOH HOH B . F 4 HOH 31 331 10 HOH HOH B . F 4 HOH 32 332 75 HOH HOH B . F 4 HOH 33 333 79 HOH HOH B . F 4 HOH 34 334 66 HOH HOH B . F 4 HOH 35 335 101 HOH HOH B . F 4 HOH 36 336 8 HOH HOH B . F 4 HOH 37 337 12 HOH HOH B . F 4 HOH 38 338 7 HOH HOH B . F 4 HOH 39 339 59 HOH HOH B . F 4 HOH 40 340 5 HOH HOH B . F 4 HOH 41 341 91 HOH HOH B . F 4 HOH 42 342 77 HOH HOH B . F 4 HOH 43 343 14 HOH HOH B . F 4 HOH 44 344 80 HOH HOH B . F 4 HOH 45 345 64 HOH HOH B . F 4 HOH 46 346 96 HOH HOH B . F 4 HOH 47 347 95 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0124 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5EME _cell.details ? _cell.formula_units_Z ? _cell.length_a 35.171 _cell.length_a_esd ? _cell.length_b 35.171 _cell.length_b_esd ? _cell.length_c 68.918 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EME _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5EME _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.80 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 74.36 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '40mMMgCL2, HEPES, 1.6M (NH4)2SO4' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-11-17 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.855 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'BESSY BEAMLINE 14.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.855 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 14.2 _diffrn_source.pdbx_synchrotron_site BESSY # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5EME _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.15 _reflns.d_resolution_low 30.46 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 17805 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.064 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 18.73 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.15 _reflns_shell.d_res_low 1.22 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.99 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 96.4 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.74 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 9.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -0.39 _refine.aniso_B[1][2] -0.19 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][2] -0.39 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 1.26 _refine.B_iso_max ? _refine.B_iso_mean 13.795 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.980 _refine.correlation_coeff_Fo_to_Fc_free 0.979 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5EME _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.15 _refine.ls_d_res_low 30.46 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 16914 _refine.ls_number_reflns_R_free 891 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.08 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.14121 _refine.ls_R_factor_R_free 0.17686 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.13926 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3NJ6 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.041 _refine.pdbx_overall_ESU_R_Free 0.042 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.790 _refine.overall_SU_ML 0.036 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 170 _refine_hist.pdbx_number_atoms_ligand 158 _refine_hist.number_atoms_solvent 105 _refine_hist.number_atoms_total 433 _refine_hist.d_res_high 1.15 _refine_hist.d_res_low 30.46 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.024 0.015 610 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.004 0.020 307 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.825 2.027 912 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.793 3.000 717 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.136 0.200 60 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.028 0.020 475 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.011 0.020 140 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.645 1.240 610 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.641 1.240 610 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 3.084 1.882 913 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 3.791 13.304 999 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 3.324 12.518 948 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? 6.456 3.000 917 ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? 25.461 5.000 31 ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? 11.825 5.000 957 ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.151 _refine_ls_shell.d_res_low 1.181 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 64 _refine_ls_shell.number_reflns_R_work 1217 _refine_ls_shell.percent_reflns_obs 97.12 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.292 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.221 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5EME _struct.title 'Complex of RNA r(GCAGCAGC) with antisense PNA p(CTGCTGC)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5EME _struct_keywords.text 'CAG repeats, RNA/PNA, PNA antisense oligomer, poly-Q dieseases, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 5EME 5EME ? 1 ? 1 2 PDB 5EME 5EME ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5EME A 1 ? 8 ? 5EME 1 ? 8 ? 1 8 2 2 5EME B 1 ? 8 ? 5EME 101 ? 108 ? 101 108 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1030 ? 1 MORE -9 ? 1 'SSA (A^2)' 3170 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B GPN 1 C ? ? ? 1_555 B CPN 2 N ? ? B GPN 101 B CPN 102 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? B CPN 2 C ? ? ? 1_555 B TPN 3 N A ? B CPN 102 B TPN 103 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale3 covale both ? B CPN 2 C ? ? ? 1_555 B TPN 3 N B ? B CPN 102 B TPN 103 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? B TPN 3 C A ? ? 1_555 B GPN 4 N A ? B TPN 103 B GPN 104 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale5 covale both ? B TPN 3 C B ? ? 1_555 B GPN 4 N B ? B TPN 103 B GPN 104 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? B GPN 4 C A ? ? 1_555 B CPN 5 N A ? B GPN 104 B CPN 105 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale7 covale both ? B GPN 4 C B ? ? 1_555 B CPN 5 N B ? B GPN 104 B CPN 105 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale8 covale both ? B CPN 5 C A ? ? 1_555 B TPN 6 N A ? B CPN 105 B TPN 106 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale9 covale both ? B CPN 5 C B ? ? 1_555 B TPN 6 N B ? B CPN 105 B TPN 106 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale10 covale both ? B TPN 6 C A ? ? 1_555 B GPN 7 N A ? B TPN 106 B GPN 107 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale11 covale both ? B TPN 6 C B ? ? 1_555 B GPN 7 N B ? B TPN 106 B GPN 107 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale12 covale both ? B GPN 7 C A ? ? 1_555 B CPN 8 N A ? B GPN 107 B CPN 108 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale13 covale both ? B GPN 7 C B ? ? 1_555 B CPN 8 N B ? B GPN 107 B CPN 108 1_555 ? ? ? ? ? ? ? 1.342 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 GPN B 1 ? . . . . GPN B 101 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 2 CPN B 2 ? . . . . CPN B 102 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 3 TPN B 3 A . . . . TPN B 103 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 4 TPN B 3 B . . . . TPN B 103 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 5 GPN B 4 A . . . . GPN B 104 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 6 GPN B 4 B . . . . GPN B 104 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 7 CPN B 5 A . . . . CPN B 105 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 8 CPN B 5 B . . . . CPN B 105 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 9 TPN B 6 A . . . . TPN B 106 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 10 TPN B 6 B . . . . TPN B 106 ? 1_555 . . . . . . . ? 1 TPN None 'Non-standard residue' 11 GPN B 7 A . . . . GPN B 107 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 12 GPN B 7 B . . . . GPN B 107 ? 1_555 . . . . . . . ? 1 GPN None 'Non-standard residue' 13 CPN B 8 A . . . . CPN B 108 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' 14 CPN B 8 B . . . . CPN B 108 ? 1_555 . . . . . . . ? 1 CPN None 'Non-standard residue' # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 101 ? 2 'binding site for residue CL A 101' AC2 Software B CL 201 ? 1 'binding site for residue CL B 201' AC3 Software B GPN 101 ? 18 'binding site for residues GPN B 101 and CPN B 102' AC4 Software B CPN 102 ? 16 'binding site for residues CPN B 102 and TPN B 103' AC5 Software B CPN 102 ? 16 'binding site for residues CPN B 102 and TPN B 103' AC6 Software B TPN 103 ? 19 'binding site for residues TPN B 103 and GPN B 104' AC7 Software B GPN 104 ? 18 'binding site for residues GPN B 104 and CPN B 105' AC8 Software B CPN 105 ? 15 'binding site for residues CPN B 105 and TPN B 106' AC9 Software B TPN 106 ? 17 'binding site for residues TPN B 106 and GPN B 107' AD1 Software B GPN 107 ? 21 'binding site for residues GPN B 107 and CPN B 108' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 G A 4 ? G A 4 . ? 1_555 ? 2 AC1 2 HOH E . ? HOH A 238 . ? 1_555 ? 3 AC2 1 CPN B 2 ? CPN B 102 . ? 1_555 ? 4 AC3 18 G A 1 ? G A 1 . ? 6_555 ? 5 AC3 18 C A 2 ? C A 2 . ? 6_555 ? 6 AC3 18 G A 7 ? G A 7 . ? 1_555 ? 7 AC3 18 C A 8 ? C A 8 . ? 4_555 ? 8 AC3 18 C A 8 ? C A 8 . ? 1_555 ? 9 AC3 18 TPN B 3 ? TPN B 103 . ? 1_555 ? 10 AC3 18 GPN B 7 ? GPN B 107 . ? 1_455 ? 11 AC3 18 CPN B 8 ? CPN B 108 . ? 6_555 ? 12 AC3 18 CL D . ? CL B 201 . ? 1_555 ? 13 AC3 18 HOH F . ? HOH B 309 . ? 1_555 ? 14 AC3 18 HOH F . ? HOH B 311 . ? 1_555 ? 15 AC3 18 HOH F . ? HOH B 314 . ? 1_555 ? 16 AC3 18 HOH F . ? HOH B 317 . ? 1_555 ? 17 AC3 18 HOH F . ? HOH B 318 . ? 1_555 ? 18 AC3 18 HOH F . ? HOH B 320 . ? 1_555 ? 19 AC3 18 HOH F . ? HOH B 322 . ? 1_555 ? 20 AC3 18 HOH F . ? HOH B 325 . ? 1_555 ? 21 AC3 18 HOH F . ? HOH B 327 . ? 1_555 ? 22 AC4 16 G A 1 ? G A 1 . ? 6_555 ? 23 AC4 16 A A 6 ? A A 6 . ? 1_555 ? 24 AC4 16 G A 7 ? G A 7 . ? 1_555 ? 25 AC4 16 C A 8 ? C A 8 . ? 1_555 ? 26 AC4 16 GPN B 1 ? GPN B 101 . ? 1_555 ? 27 AC4 16 GPN B 4 ? GPN B 104 . ? 1_555 ? 28 AC4 16 CPN B 8 ? CPN B 108 . ? 6_555 ? 29 AC4 16 CL D . ? CL B 201 . ? 1_555 ? 30 AC4 16 HOH F . ? HOH B 302 . ? 1_555 ? 31 AC4 16 HOH F . ? HOH B 303 . ? 1_555 ? 32 AC4 16 HOH F . ? HOH B 306 . ? 1_555 ? 33 AC4 16 HOH F . ? HOH B 311 . ? 1_555 ? 34 AC4 16 HOH F . ? HOH B 318 . ? 1_555 ? 35 AC4 16 HOH F . ? HOH B 319 . ? 1_555 ? 36 AC4 16 HOH F . ? HOH B 325 . ? 1_555 ? 37 AC4 16 HOH F . ? HOH B 335 . ? 6_555 ? 38 AC5 16 G A 1 ? G A 1 . ? 6_555 ? 39 AC5 16 A A 6 ? A A 6 . ? 1_555 ? 40 AC5 16 G A 7 ? G A 7 . ? 1_555 ? 41 AC5 16 C A 8 ? C A 8 . ? 1_555 ? 42 AC5 16 GPN B 1 ? GPN B 101 . ? 1_555 ? 43 AC5 16 GPN B 4 ? GPN B 104 . ? 1_555 ? 44 AC5 16 CPN B 8 ? CPN B 108 . ? 6_555 ? 45 AC5 16 CL D . ? CL B 201 . ? 1_555 ? 46 AC5 16 HOH F . ? HOH B 302 . ? 1_555 ? 47 AC5 16 HOH F . ? HOH B 303 . ? 1_555 ? 48 AC5 16 HOH F . ? HOH B 306 . ? 1_555 ? 49 AC5 16 HOH F . ? HOH B 311 . ? 1_555 ? 50 AC5 16 HOH F . ? HOH B 318 . ? 1_555 ? 51 AC5 16 HOH F . ? HOH B 319 . ? 1_555 ? 52 AC5 16 HOH F . ? HOH B 325 . ? 1_555 ? 53 AC5 16 HOH F . ? HOH B 335 . ? 6_555 ? 54 AC6 19 G A 1 ? G A 1 . ? 6_555 ? 55 AC6 19 G A 4 ? G A 4 . ? 4_545 ? 56 AC6 19 C A 5 ? C A 5 . ? 4_545 ? 57 AC6 19 C A 5 ? C A 5 . ? 1_555 ? 58 AC6 19 A A 6 ? A A 6 . ? 1_555 ? 59 AC6 19 G A 7 ? G A 7 . ? 1_555 ? 60 AC6 19 CPN B 2 ? CPN B 102 . ? 1_555 ? 61 AC6 19 CPN B 5 ? CPN B 105 . ? 1_555 ? 62 AC6 19 CPN B 8 ? CPN B 108 . ? 6_555 ? 63 AC6 19 HOH F . ? HOH B 302 . ? 1_555 ? 64 AC6 19 HOH F . ? HOH B 303 . ? 1_555 ? 65 AC6 19 HOH F . ? HOH B 306 . ? 1_555 ? 66 AC6 19 HOH F . ? HOH B 307 . ? 1_555 ? 67 AC6 19 HOH F . ? HOH B 319 . ? 1_555 ? 68 AC6 19 HOH F . ? HOH B 321 . ? 1_555 ? 69 AC6 19 HOH F . ? HOH B 324 . ? 1_555 ? 70 AC6 19 HOH F . ? HOH B 328 . ? 1_555 ? 71 AC6 19 HOH F . ? HOH B 329 . ? 1_555 ? 72 AC6 19 HOH F . ? HOH B 335 . ? 6_555 ? 73 AC7 18 G A 4 ? G A 4 . ? 4_545 ? 74 AC7 18 G A 4 ? G A 4 . ? 1_555 ? 75 AC7 18 C A 5 ? C A 5 . ? 4_545 ? 76 AC7 18 C A 5 ? C A 5 . ? 1_555 ? 77 AC7 18 A A 6 ? A A 6 . ? 1_555 ? 78 AC7 18 HOH E . ? HOH A 240 . ? 4_545 ? 79 AC7 18 TPN B 3 ? TPN B 103 . ? 1_555 ? 80 AC7 18 TPN B 6 ? TPN B 106 . ? 1_555 ? 81 AC7 18 HOH F . ? HOH B 301 . ? 1_555 ? 82 AC7 18 HOH F . ? HOH B 303 . ? 1_555 ? 83 AC7 18 HOH F . ? HOH B 307 . ? 1_555 ? 84 AC7 18 HOH F . ? HOH B 319 . ? 1_555 ? 85 AC7 18 HOH F . ? HOH B 321 . ? 1_555 ? 86 AC7 18 HOH F . ? HOH B 323 . ? 1_555 ? 87 AC7 18 HOH F . ? HOH B 324 . ? 1_555 ? 88 AC7 18 HOH F . ? HOH B 326 . ? 1_555 ? 89 AC7 18 HOH F . ? HOH B 328 . ? 1_555 ? 90 AC7 18 HOH F . ? HOH B 329 . ? 1_555 ? 91 AC8 15 A A 3 ? A A 3 . ? 1_555 ? 92 AC8 15 G A 4 ? G A 4 . ? 1_555 ? 93 AC8 15 C A 5 ? C A 5 . ? 4_545 ? 94 AC8 15 C A 5 ? C A 5 . ? 1_555 ? 95 AC8 15 HOH E . ? HOH A 240 . ? 4_545 ? 96 AC8 15 GPN B 4 ? GPN B 104 . ? 1_555 ? 97 AC8 15 GPN B 7 ? GPN B 107 . ? 1_555 ? 98 AC8 15 HOH F . ? HOH B 301 . ? 1_555 ? 99 AC8 15 HOH F . ? HOH B 305 . ? 1_555 ? 100 AC8 15 HOH F . ? HOH B 307 . ? 1_555 ? 101 AC8 15 HOH F . ? HOH B 316 . ? 1_555 ? 102 AC8 15 HOH F . ? HOH B 323 . ? 1_555 ? 103 AC8 15 HOH F . ? HOH B 326 . ? 1_555 ? 104 AC8 15 HOH F . ? HOH B 329 . ? 1_555 ? 105 AC8 15 HOH F . ? HOH B 330 . ? 1_555 ? 106 AC9 17 G A 1 ? G A 1 . ? 1_555 ? 107 AC9 17 C A 2 ? C A 2 . ? 1_555 ? 108 AC9 17 A A 3 ? A A 3 . ? 1_555 ? 109 AC9 17 G A 4 ? G A 4 . ? 1_555 ? 110 AC9 17 G A 7 ? G A 7 . ? 4_655 ? 111 AC9 17 C A 8 ? C A 8 . ? 4_655 ? 112 AC9 17 HOH E . ? HOH A 215 . ? 4_655 ? 113 AC9 17 GPN B 1 ? GPN B 101 . ? 1_655 ? 114 AC9 17 CPN B 5 ? CPN B 105 . ? 1_555 ? 115 AC9 17 CPN B 8 ? CPN B 108 . ? 1_555 ? 116 AC9 17 HOH F . ? HOH B 301 . ? 1_555 ? 117 AC9 17 HOH F . ? HOH B 305 . ? 1_555 ? 118 AC9 17 HOH F . ? HOH B 308 . ? 1_555 ? 119 AC9 17 HOH F . ? HOH B 310 . ? 1_555 ? 120 AC9 17 HOH F . ? HOH B 315 . ? 1_555 ? 121 AC9 17 HOH F . ? HOH B 316 . ? 1_555 ? 122 AC9 17 HOH F . ? HOH B 330 . ? 1_555 ? 123 AD1 21 G A 1 ? G A 1 . ? 1_555 ? 124 AD1 21 C A 2 ? C A 2 . ? 1_555 ? 125 AD1 21 A A 3 ? A A 3 . ? 1_555 ? 126 AD1 21 G A 7 ? G A 7 . ? 4_655 ? 127 AD1 21 C A 8 ? C A 8 . ? 4_655 ? 128 AD1 21 HOH E . ? HOH A 201 . ? 4_655 ? 129 AD1 21 HOH E . ? HOH A 215 . ? 4_655 ? 130 AD1 21 GPN B 1 ? GPN B 101 . ? 1_655 ? 131 AD1 21 CPN B 2 ? CPN B 102 . ? 6_555 ? 132 AD1 21 TPN B 3 ? TPN B 103 . ? 6_555 ? 133 AD1 21 TPN B 6 ? TPN B 106 . ? 1_555 ? 134 AD1 21 HOH F . ? HOH B 304 . ? 1_555 ? 135 AD1 21 HOH F . ? HOH B 305 . ? 1_555 ? 136 AD1 21 HOH F . ? HOH B 308 . ? 1_555 ? 137 AD1 21 HOH F . ? HOH B 310 . ? 1_555 ? 138 AD1 21 HOH F . ? HOH B 312 . ? 1_555 ? 139 AD1 21 HOH F . ? HOH B 313 . ? 1_555 ? 140 AD1 21 HOH F . ? HOH B 315 . ? 1_555 ? 141 AD1 21 HOH F . ? HOH B 316 . ? 1_555 ? 142 AD1 21 HOH F . ? HOH B 324 . ? 6_555 ? 143 AD1 21 HOH F . ? HOH B 333 . ? 1_555 ? # _pdbx_entry_details.entry_id 5EME _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "C2'" _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 A _pdbx_validate_rmsd_bond.auth_seq_id_1 3 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 A _pdbx_validate_rmsd_bond.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 A _pdbx_validate_rmsd_bond.auth_seq_id_2 3 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.475 _pdbx_validate_rmsd_bond.bond_target_value 1.526 _pdbx_validate_rmsd_bond.bond_deviation -0.051 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.008 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A A 3 ? A "C2'" A A 3 ? A "C1'" A A 3 ? ? 95.33 101.30 -5.97 0.70 N 2 1 "C3'" A G 7 ? B "C2'" A G 7 ? B "C1'" A G 7 ? B 95.62 101.30 -5.68 0.70 N 3 1 N1 A C 8 ? ? "C1'" A C 8 ? ? "C2'" A C 8 ? B 104.85 112.00 -7.15 1.10 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CL CL CL N N 73 CPN "C8'" C N N 74 CPN "C7'" C N N 75 CPN "O7'" O N N 76 CPN "C5'" C N N 77 CPN C C N N 78 CPN O O N N 79 CPN OXT O N N 80 CPN "N4'" N N N 81 CPN "C3'" C N N 82 CPN "C2'" C N N 83 CPN N N N N 84 CPN N1 N N N 85 CPN C2 C N N 86 CPN N3 N N N 87 CPN C4 C N N 88 CPN C5 C N N 89 CPN C6 C N N 90 CPN O2 O N N 91 CPN N4 N N N 92 CPN "H8'1" H N N 93 CPN "H8'2" H N N 94 CPN "H5'1" H N N 95 CPN "H5'2" H N N 96 CPN HXT H N N 97 CPN "H3'1" H N N 98 CPN "H3'2" H N N 99 CPN "H2'1" H N N 100 CPN "H2'2" H N N 101 CPN H H N N 102 CPN H2 H N N 103 CPN H3 H N N 104 CPN H5 H N N 105 CPN H6 H N N 106 CPN HN41 H N N 107 CPN HN42 H N N 108 G OP3 O N N 109 G P P N N 110 G OP1 O N N 111 G OP2 O N N 112 G "O5'" O N N 113 G "C5'" C N N 114 G "C4'" C N R 115 G "O4'" O N N 116 G "C3'" C N S 117 G "O3'" O N N 118 G "C2'" C N R 119 G "O2'" O N N 120 G "C1'" C N R 121 G N9 N Y N 122 G C8 C Y N 123 G N7 N Y N 124 G C5 C Y N 125 G C6 C N N 126 G O6 O N N 127 G N1 N N N 128 G C2 C N N 129 G N2 N N N 130 G N3 N N N 131 G C4 C Y N 132 G HOP3 H N N 133 G HOP2 H N N 134 G "H5'" H N N 135 G "H5''" H N N 136 G "H4'" H N N 137 G "H3'" H N N 138 G "HO3'" H N N 139 G "H2'" H N N 140 G "HO2'" H N N 141 G "H1'" H N N 142 G H8 H N N 143 G H1 H N N 144 G H21 H N N 145 G H22 H N N 146 GPN "C8'" C N N 147 GPN "C7'" C N N 148 GPN "O7'" O N N 149 GPN "C5'" C N N 150 GPN C C N N 151 GPN O O N N 152 GPN OXT O N N 153 GPN "N4'" N N N 154 GPN "C3'" C N N 155 GPN "C2'" C N N 156 GPN N N N N 157 GPN N9 N Y N 158 GPN C8 C Y N 159 GPN N7 N Y N 160 GPN C5 C Y N 161 GPN C6 C N N 162 GPN O6 O N N 163 GPN N1 N N N 164 GPN C2 C N N 165 GPN N2 N N N 166 GPN N3 N N N 167 GPN C4 C Y N 168 GPN "H8'1" H N N 169 GPN "H8'2" H N N 170 GPN "H5'1" H N N 171 GPN "H5'2" H N N 172 GPN HXT H N N 173 GPN "H3'1" H N N 174 GPN "H3'2" H N N 175 GPN "H2'1" H N N 176 GPN "H2'2" H N N 177 GPN H H N N 178 GPN H2 H N N 179 GPN H3 H N N 180 GPN H8 H N N 181 GPN HN1 H N N 182 GPN HN21 H N N 183 GPN HN22 H N N 184 HOH O O N N 185 HOH H1 H N N 186 HOH H2 H N N 187 TPN "C8'" C N N 188 TPN "C7'" C N N 189 TPN "O7'" O N N 190 TPN "C5'" C N N 191 TPN C C N N 192 TPN O O N N 193 TPN OXT O N N 194 TPN "N4'" N N N 195 TPN "C3'" C N N 196 TPN "C2'" C N N 197 TPN N N N N 198 TPN N1 N N N 199 TPN C6 C N N 200 TPN C2 C N N 201 TPN O2 O N N 202 TPN N3 N N N 203 TPN C4 C N N 204 TPN O4 O N N 205 TPN C5 C N N 206 TPN C5M C N N 207 TPN "H8'1" H N N 208 TPN "H8'2" H N N 209 TPN "H5'1" H N N 210 TPN "H5'2" H N N 211 TPN HXT H N N 212 TPN "H3'1" H N N 213 TPN "H3'2" H N N 214 TPN "H2'1" H N N 215 TPN "H2'2" H N N 216 TPN H H N N 217 TPN H2 H N N 218 TPN H3 H N N 219 TPN H6 H N N 220 TPN HN3 H N N 221 TPN HM51 H N N 222 TPN HM52 H N N 223 TPN HM53 H N N 224 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 CPN "C8'" "C7'" sing N N 76 CPN "C8'" N1 sing N N 77 CPN "C8'" "H8'1" sing N N 78 CPN "C8'" "H8'2" sing N N 79 CPN "C7'" "O7'" doub N N 80 CPN "C7'" "N4'" sing N N 81 CPN "C5'" C sing N N 82 CPN "C5'" "N4'" sing N N 83 CPN "C5'" "H5'1" sing N N 84 CPN "C5'" "H5'2" sing N N 85 CPN C O doub N N 86 CPN C OXT sing N N 87 CPN OXT HXT sing N N 88 CPN "N4'" "C3'" sing N N 89 CPN "C3'" "C2'" sing N N 90 CPN "C3'" "H3'1" sing N N 91 CPN "C3'" "H3'2" sing N N 92 CPN "C2'" N sing N N 93 CPN "C2'" "H2'1" sing N N 94 CPN "C2'" "H2'2" sing N N 95 CPN N H sing N N 96 CPN N H2 sing N N 97 CPN N H3 sing N N 98 CPN N1 C2 sing N N 99 CPN N1 C6 sing N N 100 CPN C2 N3 sing N N 101 CPN C2 O2 doub N N 102 CPN N3 C4 doub N N 103 CPN C4 C5 sing N N 104 CPN C4 N4 sing N N 105 CPN C5 C6 doub N N 106 CPN C5 H5 sing N N 107 CPN C6 H6 sing N N 108 CPN N4 HN41 sing N N 109 CPN N4 HN42 sing N N 110 G OP3 P sing N N 111 G OP3 HOP3 sing N N 112 G P OP1 doub N N 113 G P OP2 sing N N 114 G P "O5'" sing N N 115 G OP2 HOP2 sing N N 116 G "O5'" "C5'" sing N N 117 G "C5'" "C4'" sing N N 118 G "C5'" "H5'" sing N N 119 G "C5'" "H5''" sing N N 120 G "C4'" "O4'" sing N N 121 G "C4'" "C3'" sing N N 122 G "C4'" "H4'" sing N N 123 G "O4'" "C1'" sing N N 124 G "C3'" "O3'" sing N N 125 G "C3'" "C2'" sing N N 126 G "C3'" "H3'" sing N N 127 G "O3'" "HO3'" sing N N 128 G "C2'" "O2'" sing N N 129 G "C2'" "C1'" sing N N 130 G "C2'" "H2'" sing N N 131 G "O2'" "HO2'" sing N N 132 G "C1'" N9 sing N N 133 G "C1'" "H1'" sing N N 134 G N9 C8 sing Y N 135 G N9 C4 sing Y N 136 G C8 N7 doub Y N 137 G C8 H8 sing N N 138 G N7 C5 sing Y N 139 G C5 C6 sing N N 140 G C5 C4 doub Y N 141 G C6 O6 doub N N 142 G C6 N1 sing N N 143 G N1 C2 sing N N 144 G N1 H1 sing N N 145 G C2 N2 sing N N 146 G C2 N3 doub N N 147 G N2 H21 sing N N 148 G N2 H22 sing N N 149 G N3 C4 sing N N 150 GPN "C8'" "C7'" sing N N 151 GPN "C8'" N9 sing N N 152 GPN "C8'" "H8'1" sing N N 153 GPN "C8'" "H8'2" sing N N 154 GPN "C7'" "O7'" doub N N 155 GPN "C7'" "N4'" sing N N 156 GPN "C5'" C sing N N 157 GPN "C5'" "N4'" sing N N 158 GPN "C5'" "H5'1" sing N N 159 GPN "C5'" "H5'2" sing N N 160 GPN C O doub N N 161 GPN C OXT sing N N 162 GPN OXT HXT sing N N 163 GPN "N4'" "C3'" sing N N 164 GPN "C3'" "C2'" sing N N 165 GPN "C3'" "H3'1" sing N N 166 GPN "C3'" "H3'2" sing N N 167 GPN "C2'" N sing N N 168 GPN "C2'" "H2'1" sing N N 169 GPN "C2'" "H2'2" sing N N 170 GPN N H sing N N 171 GPN N H2 sing N N 172 GPN N H3 sing N N 173 GPN N9 C8 sing Y N 174 GPN N9 C4 sing Y N 175 GPN C8 N7 doub Y N 176 GPN C8 H8 sing N N 177 GPN N7 C5 sing Y N 178 GPN C5 C6 sing N N 179 GPN C5 C4 doub Y N 180 GPN C6 O6 doub N N 181 GPN C6 N1 sing N N 182 GPN N1 C2 sing N N 183 GPN N1 HN1 sing N N 184 GPN C2 N2 sing N N 185 GPN C2 N3 doub N N 186 GPN N2 HN21 sing N N 187 GPN N2 HN22 sing N N 188 GPN N3 C4 sing N N 189 HOH O H1 sing N N 190 HOH O H2 sing N N 191 TPN "C8'" "C7'" sing N N 192 TPN "C8'" N1 sing N N 193 TPN "C8'" "H8'1" sing N N 194 TPN "C8'" "H8'2" sing N N 195 TPN "C7'" "O7'" doub N N 196 TPN "C7'" "N4'" sing N N 197 TPN "C5'" C sing N N 198 TPN "C5'" "N4'" sing N N 199 TPN "C5'" "H5'1" sing N N 200 TPN "C5'" "H5'2" sing N N 201 TPN C O doub N N 202 TPN C OXT sing N N 203 TPN OXT HXT sing N N 204 TPN "N4'" "C3'" sing N N 205 TPN "C3'" "C2'" sing N N 206 TPN "C3'" "H3'1" sing N N 207 TPN "C3'" "H3'2" sing N N 208 TPN "C2'" N sing N N 209 TPN "C2'" "H2'1" sing N N 210 TPN "C2'" "H2'2" sing N N 211 TPN N H sing N N 212 TPN N H2 sing N N 213 TPN N H3 sing N N 214 TPN N1 C6 sing N N 215 TPN N1 C2 sing N N 216 TPN C6 C5 doub N N 217 TPN C6 H6 sing N N 218 TPN C2 O2 doub N N 219 TPN C2 N3 sing N N 220 TPN N3 C4 sing N N 221 TPN N3 HN3 sing N N 222 TPN C4 O4 doub N N 223 TPN C4 C5 sing N N 224 TPN C5 C5M sing N N 225 TPN C5M HM51 sing N N 226 TPN C5M HM52 sing N N 227 TPN C5M HM53 sing N N 228 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Centre' Poland UMO-2011/01/B/NZ1/04429 1 'Ministry of Science and Higher Education' Poland 0450/IP1/2013/72 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3NJ6 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5EME _atom_sites.fract_transf_matrix[1][1] 0.028433 _atom_sites.fract_transf_matrix[1][2] 0.016416 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032831 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014510 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O P # loop_