data_5EMP # _entry.id 5EMP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5EMP pdb_00005emp 10.2210/pdb5emp/pdb WWPDB D_1000215165 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-06-29 2 'Structure model' 1 1 2017-10-04 3 'Structure model' 1 2 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' diffrn_detector 2 2 'Structure model' diffrn_source 3 2 'Structure model' pdbx_struct_oper_list 4 3 'Structure model' chem_comp_atom 5 3 'Structure model' chem_comp_bond 6 3 'Structure model' database_2 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_conn_type # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_diffrn_detector.detector' 2 2 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 3 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 4 3 'Structure model' '_database_2.pdbx_DOI' 5 3 'Structure model' '_database_2.pdbx_database_accession' 6 3 'Structure model' '_struct_conn.conn_type_id' 7 3 'Structure model' '_struct_conn.id' 8 3 'Structure model' '_struct_conn.pdbx_dist_value' 9 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 11 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 12 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 14 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 16 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 17 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 18 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 24 3 'Structure model' '_struct_conn_type.id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5EMP _pdbx_database_status.recvd_initial_deposition_date 2015-11-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 5EMC PDB . unspecified 5EMQ PDB . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lian, T.' 1 'Jin, J.' 2 'Su, X.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'The effects of cytosine methylation on general transcription factors' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lian, T.' 1 ? primary 'Jin, J.' 2 ? primary 'Su, X.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Glucocorticoid receptor' 10371.312 2 ? ? 'UNP RESIDUES 411-500' ? 2 polymer syn ;DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*GP*AP*TP*GP*TP*TP*CP*TP*G)-3') ; 5515.591 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(P*CP*CP*AP*GP*AP*AP*CP*AP*TP*(5CM)P*AP*TP*GP*TP*TP*CP*TP*G)-3') ; 5489.594 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 4 ? ? ? ? 5 water nat water 18.015 47 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'GR,Nuclear receptor subfamily 3 group C member 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSHMTATTGPPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGM NLEARKTKKKIKGI ; ;GSHMTATTGPPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGM NLEARKTKKKIKGI ; A,B ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DA)(DG)(DA)(DA)(DC)(DA)(DT)(DG)(DA)(DT)(DG)(DT)(DT)(DC)(DT)(DG)' CCAGAACATGATGTTCTG C ? 3 polydeoxyribonucleotide no yes '(DC)(DC)(DA)(DG)(DA)(DA)(DC)(DA)(DT)(5CM)(DA)(DT)(DG)(DT)(DT)(DC)(DT)(DG)' CCAGAACATCATGTTCTG D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 THR n 1 6 ALA n 1 7 THR n 1 8 THR n 1 9 GLY n 1 10 PRO n 1 11 PRO n 1 12 PRO n 1 13 LYS n 1 14 LEU n 1 15 CYS n 1 16 LEU n 1 17 VAL n 1 18 CYS n 1 19 SER n 1 20 ASP n 1 21 GLU n 1 22 ALA n 1 23 SER n 1 24 GLY n 1 25 CYS n 1 26 HIS n 1 27 TYR n 1 28 GLY n 1 29 VAL n 1 30 LEU n 1 31 THR n 1 32 CYS n 1 33 GLY n 1 34 SER n 1 35 CYS n 1 36 LYS n 1 37 VAL n 1 38 PHE n 1 39 PHE n 1 40 LYS n 1 41 ARG n 1 42 ALA n 1 43 VAL n 1 44 GLU n 1 45 GLY n 1 46 GLN n 1 47 HIS n 1 48 ASN n 1 49 TYR n 1 50 LEU n 1 51 CYS n 1 52 ALA n 1 53 GLY n 1 54 ARG n 1 55 ASN n 1 56 ASP n 1 57 CYS n 1 58 ILE n 1 59 ILE n 1 60 ASP n 1 61 LYS n 1 62 ILE n 1 63 ARG n 1 64 ARG n 1 65 LYS n 1 66 ASN n 1 67 CYS n 1 68 PRO n 1 69 ALA n 1 70 CYS n 1 71 ARG n 1 72 TYR n 1 73 ARG n 1 74 LYS n 1 75 CYS n 1 76 LEU n 1 77 GLN n 1 78 ALA n 1 79 GLY n 1 80 MET n 1 81 ASN n 1 82 LEU n 1 83 GLU n 1 84 ALA n 1 85 ARG n 1 86 LYS n 1 87 THR n 1 88 LYS n 1 89 LYS n 1 90 LYS n 1 91 ILE n 1 92 LYS n 1 93 GLY n 1 94 ILE n 2 1 DC n 2 2 DC n 2 3 DA n 2 4 DG n 2 5 DA n 2 6 DA n 2 7 DC n 2 8 DA n 2 9 DT n 2 10 DG n 2 11 DA n 2 12 DT n 2 13 DG n 2 14 DT n 2 15 DT n 2 16 DC n 2 17 DT n 2 18 DG n 3 1 DC n 3 2 DC n 3 3 DA n 3 4 DG n 3 5 DA n 3 6 DA n 3 7 DC n 3 8 DA n 3 9 DT n 3 10 5CM n 3 11 DA n 3 12 DT n 3 13 DG n 3 14 DT n 3 15 DT n 3 16 DC n 3 17 DT n 3 18 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 94 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NR3C1, GRL' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli-Pichia pastoris shuttle vector pPpHIS4' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 1182038 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 18 'synthetic construct' ? 32630 ? 3 1 sample 1 18 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 426 ? ? ? A . n A 1 2 SER 2 427 ? ? ? A . n A 1 3 HIS 3 428 ? ? ? A . n A 1 4 MET 4 429 ? ? ? A . n A 1 5 THR 5 430 ? ? ? A . n A 1 6 ALA 6 431 ? ? ? A . n A 1 7 THR 7 432 ? ? ? A . n A 1 8 THR 8 433 ? ? ? A . n A 1 9 GLY 9 434 ? ? ? A . n A 1 10 PRO 10 435 ? ? ? A . n A 1 11 PRO 11 436 ? ? ? A . n A 1 12 PRO 12 437 ? ? ? A . n A 1 13 LYS 13 438 438 LYS LYS A . n A 1 14 LEU 14 439 439 LEU LEU A . n A 1 15 CYS 15 440 440 CYS CYS A . n A 1 16 LEU 16 441 441 LEU LEU A . n A 1 17 VAL 17 442 442 VAL VAL A . n A 1 18 CYS 18 443 443 CYS CYS A . n A 1 19 SER 19 444 444 SER SER A . n A 1 20 ASP 20 445 445 ASP ASP A . n A 1 21 GLU 21 446 446 GLU GLU A . n A 1 22 ALA 22 447 447 ALA ALA A . n A 1 23 SER 23 448 448 SER SER A . n A 1 24 GLY 24 449 449 GLY GLY A . n A 1 25 CYS 25 450 450 CYS CYS A . n A 1 26 HIS 26 451 451 HIS HIS A . n A 1 27 TYR 27 452 452 TYR TYR A . n A 1 28 GLY 28 453 453 GLY GLY A . n A 1 29 VAL 29 454 454 VAL VAL A . n A 1 30 LEU 30 455 455 LEU LEU A . n A 1 31 THR 31 456 456 THR THR A . n A 1 32 CYS 32 457 457 CYS CYS A . n A 1 33 GLY 33 458 458 GLY GLY A . n A 1 34 SER 34 459 459 SER SER A . n A 1 35 CYS 35 460 460 CYS CYS A . n A 1 36 LYS 36 461 461 LYS LYS A . n A 1 37 VAL 37 462 462 VAL VAL A . n A 1 38 PHE 38 463 463 PHE PHE A . n A 1 39 PHE 39 464 464 PHE PHE A . n A 1 40 LYS 40 465 465 LYS LYS A . n A 1 41 ARG 41 466 466 ARG ARG A . n A 1 42 ALA 42 467 467 ALA ALA A . n A 1 43 VAL 43 468 468 VAL VAL A . n A 1 44 GLU 44 469 469 GLU GLU A . n A 1 45 GLY 45 470 470 GLY GLY A . n A 1 46 GLN 46 471 471 GLN GLN A . n A 1 47 HIS 47 472 472 HIS HIS A . n A 1 48 ASN 48 473 473 ASN ASN A . n A 1 49 TYR 49 474 474 TYR TYR A . n A 1 50 LEU 50 475 475 LEU LEU A . n A 1 51 CYS 51 476 476 CYS CYS A . n A 1 52 ALA 52 477 477 ALA ALA A . n A 1 53 GLY 53 478 478 GLY GLY A . n A 1 54 ARG 54 479 479 ARG ARG A . n A 1 55 ASN 55 480 480 ASN ASN A . n A 1 56 ASP 56 481 481 ASP ASP A . n A 1 57 CYS 57 482 482 CYS CYS A . n A 1 58 ILE 58 483 483 ILE ILE A . n A 1 59 ILE 59 484 484 ILE ILE A . n A 1 60 ASP 60 485 485 ASP ASP A . n A 1 61 LYS 61 486 486 LYS LYS A . n A 1 62 ILE 62 487 487 ILE ILE A . n A 1 63 ARG 63 488 488 ARG ARG A . n A 1 64 ARG 64 489 489 ARG ARG A . n A 1 65 LYS 65 490 490 LYS LYS A . n A 1 66 ASN 66 491 491 ASN ASN A . n A 1 67 CYS 67 492 492 CYS CYS A . n A 1 68 PRO 68 493 493 PRO PRO A . n A 1 69 ALA 69 494 494 ALA ALA A . n A 1 70 CYS 70 495 495 CYS CYS A . n A 1 71 ARG 71 496 496 ARG ARG A . n A 1 72 TYR 72 497 497 TYR TYR A . n A 1 73 ARG 73 498 498 ARG ARG A . n A 1 74 LYS 74 499 499 LYS LYS A . n A 1 75 CYS 75 500 500 CYS CYS A . n A 1 76 LEU 76 501 501 LEU LEU A . n A 1 77 GLN 77 502 502 GLN GLN A . n A 1 78 ALA 78 503 503 ALA ALA A . n A 1 79 GLY 79 504 504 GLY GLY A . n A 1 80 MET 80 505 505 MET MET A . n A 1 81 ASN 81 506 506 ASN ASN A . n A 1 82 LEU 82 507 507 LEU LEU A . n A 1 83 GLU 83 508 508 GLU GLU A . n A 1 84 ALA 84 509 ? ? ? A . n A 1 85 ARG 85 510 ? ? ? A . n A 1 86 LYS 86 511 ? ? ? A . n A 1 87 THR 87 512 ? ? ? A . n A 1 88 LYS 88 513 ? ? ? A . n A 1 89 LYS 89 514 ? ? ? A . n A 1 90 LYS 90 515 ? ? ? A . n A 1 91 ILE 91 516 ? ? ? A . n A 1 92 LYS 92 517 ? ? ? A . n A 1 93 GLY 93 518 ? ? ? A . n A 1 94 ILE 94 519 ? ? ? A . n B 1 1 GLY 1 426 ? ? ? B . n B 1 2 SER 2 427 ? ? ? B . n B 1 3 HIS 3 428 ? ? ? B . n B 1 4 MET 4 429 ? ? ? B . n B 1 5 THR 5 430 ? ? ? B . n B 1 6 ALA 6 431 ? ? ? B . n B 1 7 THR 7 432 ? ? ? B . n B 1 8 THR 8 433 ? ? ? B . n B 1 9 GLY 9 434 ? ? ? B . n B 1 10 PRO 10 435 ? ? ? B . n B 1 11 PRO 11 436 ? ? ? B . n B 1 12 PRO 12 437 ? ? ? B . n B 1 13 LYS 13 438 438 LYS LYS B . n B 1 14 LEU 14 439 439 LEU LEU B . n B 1 15 CYS 15 440 440 CYS CYS B . n B 1 16 LEU 16 441 441 LEU LEU B . n B 1 17 VAL 17 442 442 VAL VAL B . n B 1 18 CYS 18 443 443 CYS CYS B . n B 1 19 SER 19 444 444 SER SER B . n B 1 20 ASP 20 445 445 ASP ASP B . n B 1 21 GLU 21 446 446 GLU GLU B . n B 1 22 ALA 22 447 447 ALA ALA B . n B 1 23 SER 23 448 448 SER SER B . n B 1 24 GLY 24 449 449 GLY GLY B . n B 1 25 CYS 25 450 450 CYS CYS B . n B 1 26 HIS 26 451 451 HIS HIS B . n B 1 27 TYR 27 452 452 TYR TYR B . n B 1 28 GLY 28 453 453 GLY GLY B . n B 1 29 VAL 29 454 454 VAL VAL B . n B 1 30 LEU 30 455 455 LEU LEU B . n B 1 31 THR 31 456 456 THR THR B . n B 1 32 CYS 32 457 457 CYS CYS B . n B 1 33 GLY 33 458 458 GLY GLY B . n B 1 34 SER 34 459 459 SER SER B . n B 1 35 CYS 35 460 460 CYS CYS B . n B 1 36 LYS 36 461 461 LYS LYS B . n B 1 37 VAL 37 462 462 VAL VAL B . n B 1 38 PHE 38 463 463 PHE PHE B . n B 1 39 PHE 39 464 464 PHE PHE B . n B 1 40 LYS 40 465 465 LYS LYS B . n B 1 41 ARG 41 466 466 ARG ARG B . n B 1 42 ALA 42 467 467 ALA ALA B . n B 1 43 VAL 43 468 468 VAL VAL B . n B 1 44 GLU 44 469 469 GLU GLU B . n B 1 45 GLY 45 470 470 GLY GLY B . n B 1 46 GLN 46 471 471 GLN GLN B . n B 1 47 HIS 47 472 472 HIS HIS B . n B 1 48 ASN 48 473 473 ASN ASN B . n B 1 49 TYR 49 474 474 TYR TYR B . n B 1 50 LEU 50 475 475 LEU LEU B . n B 1 51 CYS 51 476 476 CYS CYS B . n B 1 52 ALA 52 477 477 ALA ALA B . n B 1 53 GLY 53 478 478 GLY GLY B . n B 1 54 ARG 54 479 479 ARG ARG B . n B 1 55 ASN 55 480 480 ASN ASN B . n B 1 56 ASP 56 481 481 ASP ASP B . n B 1 57 CYS 57 482 482 CYS CYS B . n B 1 58 ILE 58 483 483 ILE ILE B . n B 1 59 ILE 59 484 484 ILE ILE B . n B 1 60 ASP 60 485 485 ASP ASP B . n B 1 61 LYS 61 486 486 LYS LYS B . n B 1 62 ILE 62 487 487 ILE ILE B . n B 1 63 ARG 63 488 488 ARG ARG B . n B 1 64 ARG 64 489 489 ARG ARG B . n B 1 65 LYS 65 490 490 LYS LYS B . n B 1 66 ASN 66 491 491 ASN ASN B . n B 1 67 CYS 67 492 492 CYS CYS B . n B 1 68 PRO 68 493 493 PRO PRO B . n B 1 69 ALA 69 494 494 ALA ALA B . n B 1 70 CYS 70 495 495 CYS CYS B . n B 1 71 ARG 71 496 496 ARG ARG B . n B 1 72 TYR 72 497 497 TYR TYR B . n B 1 73 ARG 73 498 498 ARG ARG B . n B 1 74 LYS 74 499 499 LYS LYS B . n B 1 75 CYS 75 500 500 CYS CYS B . n B 1 76 LEU 76 501 501 LEU LEU B . n B 1 77 GLN 77 502 502 GLN GLN B . n B 1 78 ALA 78 503 503 ALA ALA B . n B 1 79 GLY 79 504 504 GLY GLY B . n B 1 80 MET 80 505 505 MET MET B . n B 1 81 ASN 81 506 506 ASN ASN B . n B 1 82 LEU 82 507 507 LEU LEU B . n B 1 83 GLU 83 508 508 GLU GLU B . n B 1 84 ALA 84 509 509 ALA ALA B . n B 1 85 ARG 85 510 ? ? ? B . n B 1 86 LYS 86 511 ? ? ? B . n B 1 87 THR 87 512 ? ? ? B . n B 1 88 LYS 88 513 ? ? ? B . n B 1 89 LYS 89 514 ? ? ? B . n B 1 90 LYS 90 515 ? ? ? B . n B 1 91 ILE 91 516 ? ? ? B . n B 1 92 LYS 92 517 ? ? ? B . n B 1 93 GLY 93 518 ? ? ? B . n B 1 94 ILE 94 519 ? ? ? B . n C 2 1 DC 1 1 1 DC DC C . n C 2 2 DC 2 2 2 DC DC C . n C 2 3 DA 3 3 3 DA DA C . n C 2 4 DG 4 4 4 DG DG C . n C 2 5 DA 5 5 5 DA DA C . n C 2 6 DA 6 6 6 DA DA C . n C 2 7 DC 7 7 7 DC DC C . n C 2 8 DA 8 8 8 DA DA C . n C 2 9 DT 9 9 9 DT DT C . n C 2 10 DG 10 10 10 DG DG C . n C 2 11 DA 11 11 11 DA DA C . n C 2 12 DT 12 12 12 DT DT C . n C 2 13 DG 13 13 13 DG DG C . n C 2 14 DT 14 14 14 DT DT C . n C 2 15 DT 15 15 15 DT DT C . n C 2 16 DC 16 16 16 DC DC C . n C 2 17 DT 17 17 17 DT DT C . n C 2 18 DG 18 18 18 DG DG C . n D 3 1 DC 1 2 2 DC DC D . n D 3 2 DC 2 3 3 DC DC D . n D 3 3 DA 3 4 4 DA DA D . n D 3 4 DG 4 5 5 DG DG D . n D 3 5 DA 5 6 6 DA DA D . n D 3 6 DA 6 7 7 DA DA D . n D 3 7 DC 7 8 8 DC DC D . n D 3 8 DA 8 9 9 DA DA D . n D 3 9 DT 9 10 10 DT DT D . n D 3 10 5CM 10 11 11 5CM 5CM D . n D 3 11 DA 11 12 12 DA DA D . n D 3 12 DT 12 13 13 DT DT D . n D 3 13 DG 13 14 14 DG DG D . n D 3 14 DT 14 15 15 DT DT D . n D 3 15 DT 15 16 16 DT DT D . n D 3 16 DC 16 17 17 DC DC D . n D 3 17 DT 17 18 18 DT DT D . n D 3 18 DG 18 19 19 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ZN 1 601 526 ZN ZN A . F 4 ZN 1 602 527 ZN ZN A . G 4 ZN 1 601 526 ZN ZN B . H 4 ZN 1 602 527 ZN ZN B . I 5 HOH 1 701 40 HOH HOH A . I 5 HOH 2 702 45 HOH HOH A . I 5 HOH 3 703 32 HOH HOH A . I 5 HOH 4 704 28 HOH HOH A . I 5 HOH 5 705 36 HOH HOH A . I 5 HOH 6 706 27 HOH HOH A . I 5 HOH 7 707 35 HOH HOH A . I 5 HOH 8 708 4 HOH HOH A . I 5 HOH 9 709 5 HOH HOH A . I 5 HOH 10 710 1 HOH HOH A . I 5 HOH 11 711 6 HOH HOH A . I 5 HOH 12 712 2 HOH HOH A . J 5 HOH 1 701 39 HOH HOH B . J 5 HOH 2 702 19 HOH HOH B . J 5 HOH 3 703 20 HOH HOH B . J 5 HOH 4 704 37 HOH HOH B . J 5 HOH 5 705 43 HOH HOH B . J 5 HOH 6 706 41 HOH HOH B . J 5 HOH 7 707 21 HOH HOH B . J 5 HOH 8 708 30 HOH HOH B . J 5 HOH 9 709 18 HOH HOH B . J 5 HOH 10 710 10 HOH HOH B . J 5 HOH 11 711 34 HOH HOH B . J 5 HOH 12 712 42 HOH HOH B . J 5 HOH 13 713 8 HOH HOH B . J 5 HOH 14 714 11 HOH HOH B . J 5 HOH 15 715 26 HOH HOH B . J 5 HOH 16 716 44 HOH HOH B . J 5 HOH 17 717 38 HOH HOH B . J 5 HOH 18 718 13 HOH HOH B . J 5 HOH 19 719 25 HOH HOH B . J 5 HOH 20 720 12 HOH HOH B . J 5 HOH 21 721 9 HOH HOH B . J 5 HOH 22 722 15 HOH HOH B . J 5 HOH 23 723 14 HOH HOH B . J 5 HOH 24 724 47 HOH HOH B . J 5 HOH 25 725 29 HOH HOH B . J 5 HOH 26 726 17 HOH HOH B . J 5 HOH 27 727 7 HOH HOH B . J 5 HOH 28 728 16 HOH HOH B . K 5 HOH 1 101 49 HOH HOH C . K 5 HOH 2 102 46 HOH HOH C . L 5 HOH 1 101 31 HOH HOH D . L 5 HOH 2 102 3 HOH HOH D . L 5 HOH 3 103 23 HOH HOH D . L 5 HOH 4 104 22 HOH HOH D . L 5 HOH 5 105 24 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 446 ? CG ? A GLU 21 CG 2 1 Y 1 A GLU 446 ? CD ? A GLU 21 CD 3 1 Y 1 A GLU 446 ? OE1 ? A GLU 21 OE1 4 1 Y 1 A GLU 446 ? OE2 ? A GLU 21 OE2 5 1 Y 1 A GLU 469 ? CG ? A GLU 44 CG 6 1 Y 1 A GLU 469 ? CD ? A GLU 44 CD 7 1 Y 1 A GLU 469 ? OE1 ? A GLU 44 OE1 8 1 Y 1 A GLU 469 ? OE2 ? A GLU 44 OE2 9 1 Y 1 A GLN 471 ? CG ? A GLN 46 CG 10 1 Y 1 A GLN 471 ? CD ? A GLN 46 CD 11 1 Y 1 A GLN 471 ? OE1 ? A GLN 46 OE1 12 1 Y 1 A GLN 471 ? NE2 ? A GLN 46 NE2 13 1 Y 1 A ASN 473 ? CG ? A ASN 48 CG 14 1 Y 1 A ASN 473 ? OD1 ? A ASN 48 OD1 15 1 Y 1 A ASN 473 ? ND2 ? A ASN 48 ND2 16 1 Y 1 B GLN 471 ? CG ? B GLN 46 CG 17 1 Y 1 B GLN 471 ? CD ? B GLN 46 CD 18 1 Y 1 B GLN 471 ? OE1 ? B GLN 46 OE1 19 1 Y 1 B GLN 471 ? NE2 ? B GLN 46 NE2 20 1 Y 1 B ASN 473 ? CG ? B ASN 48 CG 21 1 Y 1 B ASN 473 ? OD1 ? B ASN 48 OD1 22 1 Y 1 B ASN 473 ? ND2 ? B ASN 48 ND2 23 1 Y 1 B ALA 509 ? CA ? B ALA 84 CA 24 1 Y 1 B ALA 509 ? C ? B ALA 84 C 25 1 Y 1 B ALA 509 ? O ? B ALA 84 O 26 1 Y 1 B ALA 509 ? CB ? B ALA 84 CB 27 1 Y 1 D DT 10 ? C7 ? D DT 9 C7 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.8.1_1168 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 3 ? 'data processing' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5EMP _cell.details ? _cell.formula_units_Z ? _cell.length_a 39.279 _cell.length_a_esd ? _cell.length_b 100.492 _cell.length_b_esd ? _cell.length_c 112.043 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EMP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5EMP _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.48 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 69.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '50mM Tris, 200mM KCl, 50mM MgCl2, 10% PEG 4000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 2M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-11-10 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.100 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-1A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.100 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-1A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate 41.610 _reflns.entry_id 5EMP _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.300 _reflns.d_resolution_low 36.584 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 20343 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.000 _reflns.percent_possible_obs 99.400 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs 0.998 _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.2 _reflns.pdbx_Rmerge_I_obs 0.083 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.770 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.046 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.093 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 104716 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.300 2.500 ? 3.170 ? 23946 4437 ? 4435 100.000 ? ? 0.887 ? 0.498 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.552 ? 0 1 1 ? ? 2.500 3.000 ? 6.300 ? 33347 6621 ? 6605 99.800 ? ? 0.972 ? 0.226 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.253 ? 0 2 1 ? ? 3.000 3.500 ? 13.970 ? 18170 3388 ? 3362 99.200 ? ? 0.994 ? 0.096 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.107 ? 0 3 1 ? ? 3.500 4.000 ? 20.420 ? 10002 1937 ? 1919 99.100 ? ? 0.996 ? 0.066 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.075 ? 0 4 1 ? ? 4.000 6.000 ? 23.440 ? 13116 2804 ? 2770 98.800 ? ? 0.997 ? 0.053 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.059 ? 0 5 1 ? ? 6.000 10.000 ? 26.080 ? 4853 978 ? 967 98.900 ? ? 0.999 ? 0.044 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.049 ? 0 6 1 ? ? 10.000 ? ? 26.510 ? 1282 296 ? 285 96.300 ? ? 1.000 ? 0.035 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.040 ? 0 7 1 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 147.500 _refine.B_iso_mean 49.7100 _refine.B_iso_min 18.040 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5EMP _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.3000 _refine.ls_d_res_low 35.0080 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 20298 _refine.ls_number_reflns_R_free 1039 _refine.ls_number_reflns_R_work 19259 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.2400 _refine.ls_percent_reflns_R_free 5.1200 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1950 _refine.ls_R_factor_R_free 0.2380 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1927 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.0900 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2500 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set 0.8326 _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.3000 _refine_hist.d_res_low 35.0080 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 47 _refine_hist.number_atoms_total 1858 _refine_hist.pdbx_number_residues_total 179 _refine_hist.pdbx_B_iso_mean_ligand 32.92 _refine_hist.pdbx_B_iso_mean_solvent 42.88 _refine_hist.pdbx_number_atoms_protein 1075 _refine_hist.pdbx_number_atoms_nucleic_acid 732 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 1931 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.453 ? 2746 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.073 ? 297 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 226 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 25.330 ? 768 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.3000 2.4213 2857 . 141 2716 100.0000 . . . 0.2720 . 0.2432 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 2.4213 2.5729 2857 . 153 2704 100.0000 . . . 0.2743 . 0.2367 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 2.5729 2.7715 2876 . 161 2715 100.0000 . . . 0.2517 . 0.2250 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 2.7715 3.0502 2882 . 128 2754 100.0000 . . . 0.2648 . 0.2317 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 3.0502 3.4913 2857 . 144 2713 98.0000 . . . 0.2621 . 0.2068 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 3.4913 4.3973 2914 . 165 2749 99.0000 . . . 0.2117 . 0.1732 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 4.3973 35.0122 3055 . 147 2908 99.0000 . . . 0.2227 . 0.1626 . . . . . . 7 . . . # _struct.entry_id 5EMP _struct.title 'Transcription factor GRDBD and mmGRE complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5EMP _struct_keywords.text 'Transcription factor, complex, DNA, TRANSCRIPTION-DNA complex' _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP GCR_HUMAN P04150 ? 1 ;TATTGPPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEA RKTKKKIKGI ; 411 2 PDB 5EMP 5EMP ? 2 ? 1 3 PDB 5EMP 5EMP ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5EMP A 5 ? 94 ? P04150 411 ? 500 ? 430 519 2 1 5EMP B 5 ? 94 ? P04150 411 ? 500 ? 430 519 3 2 5EMP C 1 ? 18 ? 5EMP 1 ? 18 ? 1 18 4 3 5EMP D 1 ? 18 ? 5EMP 2 ? 19 ? 2 19 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5EMP GLY A 1 ? UNP P04150 ? ? 'expression tag' 426 1 1 5EMP SER A 2 ? UNP P04150 ? ? 'expression tag' 427 2 1 5EMP HIS A 3 ? UNP P04150 ? ? 'expression tag' 428 3 1 5EMP MET A 4 ? UNP P04150 ? ? 'expression tag' 429 4 2 5EMP GLY B 1 ? UNP P04150 ? ? 'expression tag' 426 5 2 5EMP SER B 2 ? UNP P04150 ? ? 'expression tag' 427 6 2 5EMP HIS B 3 ? UNP P04150 ? ? 'expression tag' 428 7 2 5EMP MET B 4 ? UNP P04150 ? ? 'expression tag' 429 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5910 ? 1 MORE -24 ? 1 'SSA (A^2)' 12120 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 CYS A 32 ? GLU A 44 ? CYS A 457 GLU A 469 1 ? 13 HELX_P HELX_P2 AA2 ILE A 62 ? ASN A 66 ? ILE A 487 ASN A 491 5 ? 5 HELX_P HELX_P3 AA3 CYS A 67 ? GLY A 79 ? CYS A 492 GLY A 504 1 ? 13 HELX_P HELX_P4 AA4 CYS B 32 ? GLY B 45 ? CYS B 457 GLY B 470 1 ? 14 HELX_P HELX_P5 AA5 CYS B 67 ? GLY B 79 ? CYS B 492 GLY B 504 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? D DT 9 "O3'" ? ? ? 1_555 D 5CM 10 P ? ? D DT 10 D 5CM 11 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale2 covale both ? D 5CM 10 "O3'" ? ? ? 1_555 D DA 11 P ? ? D 5CM 11 D DA 12 1_555 ? ? ? ? ? ? ? 1.569 ? ? metalc1 metalc ? ? A CYS 15 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 440 A ZN 601 1_555 ? ? ? ? ? ? ? 2.271 ? ? metalc2 metalc ? ? A CYS 18 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 443 A ZN 601 1_555 ? ? ? ? ? ? ? 2.322 ? ? metalc3 metalc ? ? A CYS 32 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 457 A ZN 601 1_555 ? ? ? ? ? ? ? 2.295 ? ? metalc4 metalc ? ? A CYS 35 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 460 A ZN 601 1_555 ? ? ? ? ? ? ? 2.306 ? ? metalc5 metalc ? ? A CYS 51 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 476 A ZN 602 1_555 ? ? ? ? ? ? ? 2.314 ? ? metalc6 metalc ? ? A CYS 57 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 482 A ZN 602 1_555 ? ? ? ? ? ? ? 2.305 ? ? metalc7 metalc ? ? A CYS 67 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 492 A ZN 602 1_555 ? ? ? ? ? ? ? 2.318 ? ? metalc8 metalc ? ? A CYS 70 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 495 A ZN 602 1_555 ? ? ? ? ? ? ? 2.337 ? ? metalc9 metalc ? ? B CYS 15 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 440 B ZN 601 1_555 ? ? ? ? ? ? ? 2.272 ? ? metalc10 metalc ? ? B CYS 18 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 443 B ZN 601 1_555 ? ? ? ? ? ? ? 2.381 ? ? metalc11 metalc ? ? B CYS 32 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 457 B ZN 601 1_555 ? ? ? ? ? ? ? 2.363 ? ? metalc12 metalc ? ? B CYS 35 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 460 B ZN 601 1_555 ? ? ? ? ? ? ? 2.302 ? ? metalc13 metalc ? ? B CYS 51 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 476 B ZN 602 1_555 ? ? ? ? ? ? ? 2.323 ? ? metalc14 metalc ? ? B CYS 57 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 482 B ZN 602 1_555 ? ? ? ? ? ? ? 2.295 ? ? metalc15 metalc ? ? B CYS 67 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 492 B ZN 602 1_555 ? ? ? ? ? ? ? 2.307 ? ? metalc16 metalc ? ? B CYS 70 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 495 B ZN 602 1_555 ? ? ? ? ? ? ? 2.357 ? ? hydrog1 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 18 N1 ? ? C DC 2 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 18 O6 ? ? C DC 2 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 18 N2 ? ? C DC 2 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DA 3 N1 ? ? ? 1_555 D DT 17 N3 ? ? C DA 3 D DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DA 3 N6 ? ? ? 1_555 D DT 17 O4 ? ? C DA 3 D DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DC 16 N3 ? ? C DG 4 D DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DC 16 O2 ? ? C DG 4 D DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DC 16 N4 ? ? C DG 4 D DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DA 5 N1 ? ? ? 1_555 D DT 15 N3 ? ? C DA 5 D DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DT 15 O4 ? ? C DA 5 D DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DA 6 N1 ? ? ? 1_555 D DT 14 N3 ? ? C DA 6 D DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DA 6 N6 ? ? ? 1_555 D DT 14 O4 ? ? C DA 6 D DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DG 13 N1 ? ? C DC 7 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 13 O6 ? ? C DC 7 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D DG 13 N2 ? ? C DC 7 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DA 8 N1 ? ? ? 1_555 D DT 12 N3 ? ? C DA 8 D DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DA 8 N6 ? ? ? 1_555 D DT 12 O4 ? ? C DA 8 D DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DT 9 N3 ? ? ? 1_555 D DA 11 N1 ? ? C DT 9 D DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DT 9 O4 ? ? ? 1_555 D DA 11 N6 ? ? C DT 9 D DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DG 10 N1 ? ? ? 1_555 D 5CM 10 N3 ? ? C DG 10 D 5CM 11 1_555 ? ? ? ? ? ? 'DG-5CM MISPAIR' ? ? ? hydrog21 hydrog ? ? C DA 11 N1 ? ? ? 1_555 D DT 9 N3 ? ? C DA 11 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DA 11 N6 ? ? ? 1_555 D DT 9 O4 ? ? C DA 11 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DT 12 N3 ? ? ? 1_555 D DA 8 N1 ? ? C DT 12 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DT 12 O4 ? ? ? 1_555 D DA 8 N6 ? ? C DT 12 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DG 13 N1 ? ? ? 1_555 D DC 7 N3 ? ? C DG 13 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DG 13 N2 ? ? ? 1_555 D DC 7 O2 ? ? C DG 13 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DG 13 O6 ? ? ? 1_555 D DC 7 N4 ? ? C DG 13 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DT 14 N3 ? ? ? 1_555 D DA 6 N1 ? ? C DT 14 D DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DT 14 O4 ? ? ? 1_555 D DA 6 N6 ? ? C DT 14 D DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DT 15 N3 ? ? ? 1_555 D DA 5 N1 ? ? C DT 15 D DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DT 15 O4 ? ? ? 1_555 D DA 5 N6 ? ? C DT 15 D DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DC 16 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 16 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DC 16 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 16 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DC 16 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 16 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DT 17 N3 ? ? ? 1_555 D DA 3 N1 ? ? C DT 17 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DT 17 O4 ? ? ? 1_555 D DA 3 N6 ? ? C DT 17 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DG 18 N1 ? ? ? 1_555 D DC 2 N3 ? ? C DG 18 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DG 18 N2 ? ? ? 1_555 D DC 2 O2 ? ? C DG 18 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DG 18 O6 ? ? ? 1_555 D DC 2 N4 ? ? C DG 18 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 15 ? A CYS 440 ? 1_555 ZN ? E ZN . ? A ZN 601 ? 1_555 SG ? A CYS 18 ? A CYS 443 ? 1_555 114.5 ? 2 SG ? A CYS 15 ? A CYS 440 ? 1_555 ZN ? E ZN . ? A ZN 601 ? 1_555 SG ? A CYS 32 ? A CYS 457 ? 1_555 110.9 ? 3 SG ? A CYS 18 ? A CYS 443 ? 1_555 ZN ? E ZN . ? A ZN 601 ? 1_555 SG ? A CYS 32 ? A CYS 457 ? 1_555 104.5 ? 4 SG ? A CYS 15 ? A CYS 440 ? 1_555 ZN ? E ZN . ? A ZN 601 ? 1_555 SG ? A CYS 35 ? A CYS 460 ? 1_555 110.1 ? 5 SG ? A CYS 18 ? A CYS 443 ? 1_555 ZN ? E ZN . ? A ZN 601 ? 1_555 SG ? A CYS 35 ? A CYS 460 ? 1_555 115.6 ? 6 SG ? A CYS 32 ? A CYS 457 ? 1_555 ZN ? E ZN . ? A ZN 601 ? 1_555 SG ? A CYS 35 ? A CYS 460 ? 1_555 100.1 ? 7 SG ? A CYS 51 ? A CYS 476 ? 1_555 ZN ? F ZN . ? A ZN 602 ? 1_555 SG ? A CYS 57 ? A CYS 482 ? 1_555 105.4 ? 8 SG ? A CYS 51 ? A CYS 476 ? 1_555 ZN ? F ZN . ? A ZN 602 ? 1_555 SG ? A CYS 67 ? A CYS 492 ? 1_555 110.8 ? 9 SG ? A CYS 57 ? A CYS 482 ? 1_555 ZN ? F ZN . ? A ZN 602 ? 1_555 SG ? A CYS 67 ? A CYS 492 ? 1_555 115.7 ? 10 SG ? A CYS 51 ? A CYS 476 ? 1_555 ZN ? F ZN . ? A ZN 602 ? 1_555 SG ? A CYS 70 ? A CYS 495 ? 1_555 110.4 ? 11 SG ? A CYS 57 ? A CYS 482 ? 1_555 ZN ? F ZN . ? A ZN 602 ? 1_555 SG ? A CYS 70 ? A CYS 495 ? 1_555 110.1 ? 12 SG ? A CYS 67 ? A CYS 492 ? 1_555 ZN ? F ZN . ? A ZN 602 ? 1_555 SG ? A CYS 70 ? A CYS 495 ? 1_555 104.4 ? 13 SG ? B CYS 15 ? B CYS 440 ? 1_555 ZN ? G ZN . ? B ZN 601 ? 1_555 SG ? B CYS 18 ? B CYS 443 ? 1_555 110.1 ? 14 SG ? B CYS 15 ? B CYS 440 ? 1_555 ZN ? G ZN . ? B ZN 601 ? 1_555 SG ? B CYS 32 ? B CYS 457 ? 1_555 115.7 ? 15 SG ? B CYS 18 ? B CYS 443 ? 1_555 ZN ? G ZN . ? B ZN 601 ? 1_555 SG ? B CYS 32 ? B CYS 457 ? 1_555 106.2 ? 16 SG ? B CYS 15 ? B CYS 440 ? 1_555 ZN ? G ZN . ? B ZN 601 ? 1_555 SG ? B CYS 35 ? B CYS 460 ? 1_555 114.3 ? 17 SG ? B CYS 18 ? B CYS 443 ? 1_555 ZN ? G ZN . ? B ZN 601 ? 1_555 SG ? B CYS 35 ? B CYS 460 ? 1_555 110.2 ? 18 SG ? B CYS 32 ? B CYS 457 ? 1_555 ZN ? G ZN . ? B ZN 601 ? 1_555 SG ? B CYS 35 ? B CYS 460 ? 1_555 99.6 ? 19 SG ? B CYS 51 ? B CYS 476 ? 1_555 ZN ? H ZN . ? B ZN 602 ? 1_555 SG ? B CYS 57 ? B CYS 482 ? 1_555 103.8 ? 20 SG ? B CYS 51 ? B CYS 476 ? 1_555 ZN ? H ZN . ? B ZN 602 ? 1_555 SG ? B CYS 67 ? B CYS 492 ? 1_555 112.1 ? 21 SG ? B CYS 57 ? B CYS 482 ? 1_555 ZN ? H ZN . ? B ZN 602 ? 1_555 SG ? B CYS 67 ? B CYS 492 ? 1_555 114.0 ? 22 SG ? B CYS 51 ? B CYS 476 ? 1_555 ZN ? H ZN . ? B ZN 602 ? 1_555 SG ? B CYS 70 ? B CYS 495 ? 1_555 106.5 ? 23 SG ? B CYS 57 ? B CYS 482 ? 1_555 ZN ? H ZN . ? B ZN 602 ? 1_555 SG ? B CYS 70 ? B CYS 495 ? 1_555 110.8 ? 24 SG ? B CYS 67 ? B CYS 492 ? 1_555 ZN ? H ZN . ? B ZN 602 ? 1_555 SG ? B CYS 70 ? B CYS 495 ? 1_555 109.3 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 24 ? HIS A 26 ? GLY A 449 HIS A 451 AA1 2 VAL A 29 ? THR A 31 ? VAL A 454 THR A 456 AA2 1 GLY B 24 ? HIS B 26 ? GLY B 449 HIS B 451 AA2 2 VAL B 29 ? THR B 31 ? VAL B 454 THR B 456 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N HIS A 26 ? N HIS A 451 O VAL A 29 ? O VAL A 454 AA2 1 2 N HIS B 26 ? N HIS B 451 O VAL B 29 ? O VAL B 454 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 601 ? 4 'binding site for residue ZN A 601' AC2 Software A ZN 602 ? 4 'binding site for residue ZN A 602' AC3 Software B ZN 601 ? 4 'binding site for residue ZN B 601' AC4 Software B ZN 602 ? 4 'binding site for residue ZN B 602' AC5 Software D DT 10 ? 5 'binding site for Di-nucleotide DT D 10 and 5CM D 11' AC6 Software D 5CM 11 ? 5 'binding site for Di-nucleotide 5CM D 11 and DA D 12' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 15 ? CYS A 440 . ? 1_555 ? 2 AC1 4 CYS A 18 ? CYS A 443 . ? 1_555 ? 3 AC1 4 CYS A 32 ? CYS A 457 . ? 1_555 ? 4 AC1 4 CYS A 35 ? CYS A 460 . ? 1_555 ? 5 AC2 4 CYS A 51 ? CYS A 476 . ? 1_555 ? 6 AC2 4 CYS A 57 ? CYS A 482 . ? 1_555 ? 7 AC2 4 CYS A 67 ? CYS A 492 . ? 1_555 ? 8 AC2 4 CYS A 70 ? CYS A 495 . ? 1_555 ? 9 AC3 4 CYS B 15 ? CYS B 440 . ? 1_555 ? 10 AC3 4 CYS B 18 ? CYS B 443 . ? 1_555 ? 11 AC3 4 CYS B 32 ? CYS B 457 . ? 1_555 ? 12 AC3 4 CYS B 35 ? CYS B 460 . ? 1_555 ? 13 AC4 4 CYS B 51 ? CYS B 476 . ? 1_555 ? 14 AC4 4 CYS B 57 ? CYS B 482 . ? 1_555 ? 15 AC4 4 CYS B 67 ? CYS B 492 . ? 1_555 ? 16 AC4 4 CYS B 70 ? CYS B 495 . ? 1_555 ? 17 AC5 5 DT C 9 ? DT C 9 . ? 1_555 ? 18 AC5 5 DG C 10 ? DG C 10 . ? 1_555 ? 19 AC5 5 DA C 11 ? DA C 11 . ? 1_555 ? 20 AC5 5 DA D 8 ? DA D 9 . ? 1_555 ? 21 AC5 5 DA D 11 ? DA D 12 . ? 1_555 ? 22 AC6 5 DT C 9 ? DT C 9 . ? 1_555 ? 23 AC6 5 DG C 10 ? DG C 10 . ? 1_555 ? 24 AC6 5 DA C 11 ? DA C 11 . ? 1_555 ? 25 AC6 5 DT D 9 ? DT D 10 . ? 1_555 ? 26 AC6 5 DT D 12 ? DT D 13 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N2 _pdbx_validate_close_contact.auth_asym_id_1 C _pdbx_validate_close_contact.auth_comp_id_1 DG _pdbx_validate_close_contact.auth_seq_id_1 10 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O2 _pdbx_validate_close_contact.auth_asym_id_2 D _pdbx_validate_close_contact.auth_comp_id_2 5CM _pdbx_validate_close_contact.auth_seq_id_2 11 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.96 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 715 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 725 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_555 _pdbx_validate_symm_contact.dist 2.05 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" C DA 8 ? ? P C DT 9 ? ? 1.517 1.607 -0.090 0.012 Y 2 1 "O3'" C DT 12 ? ? P C DG 13 ? ? 1.519 1.607 -0.088 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A LYS 438 ? ? CA A LYS 438 ? ? C A LYS 438 ? ? 137.22 111.00 26.22 2.70 N 2 1 "O4'" C DC 2 ? ? "C1'" C DC 2 ? ? N1 C DC 2 ? ? 110.45 108.30 2.15 0.30 N 3 1 "O4'" C DA 6 ? ? "C1'" C DA 6 ? ? N9 C DA 6 ? ? 110.19 108.30 1.89 0.30 N 4 1 "O4'" C DA 8 ? ? "C1'" C DA 8 ? ? N9 C DA 8 ? ? 110.20 108.30 1.90 0.30 N 5 1 "O4'" D DC 3 ? ? "C1'" D DC 3 ? ? N1 D DC 3 ? ? 110.87 108.30 2.57 0.30 N 6 1 "O4'" D DT 16 ? ? "C1'" D DT 16 ? ? N1 D DT 16 ? ? 103.51 108.00 -4.49 0.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 472 ? ? 37.20 96.26 2 1 ASP A 481 ? ? -146.22 42.20 3 1 HIS B 472 ? ? -125.20 -64.62 4 1 ASP B 481 ? ? -142.51 42.44 5 1 GLU B 508 ? ? 63.15 -118.03 # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -11.2051 _pdbx_refine_tls.origin_y 11.9377 _pdbx_refine_tls.origin_z -7.0734 _pdbx_refine_tls.T[1][1] 0.3375 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] -0.0353 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] 0.0003 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.2638 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.0158 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.3050 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 1.1608 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] -0.2570 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] 0.6405 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 1.3401 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 0.3888 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 2.7694 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.0813 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] 0.0257 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] -0.2647 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.1852 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] 0.0714 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] 0.0132 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.6467 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.1424 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] -0.1450 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ALL # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 426 ? A GLY 1 2 1 Y 1 A SER 427 ? A SER 2 3 1 Y 1 A HIS 428 ? A HIS 3 4 1 Y 1 A MET 429 ? A MET 4 5 1 Y 1 A THR 430 ? A THR 5 6 1 Y 1 A ALA 431 ? A ALA 6 7 1 Y 1 A THR 432 ? A THR 7 8 1 Y 1 A THR 433 ? A THR 8 9 1 Y 1 A GLY 434 ? A GLY 9 10 1 Y 1 A PRO 435 ? A PRO 10 11 1 Y 1 A PRO 436 ? A PRO 11 12 1 Y 1 A PRO 437 ? A PRO 12 13 1 Y 1 A ALA 509 ? A ALA 84 14 1 Y 1 A ARG 510 ? A ARG 85 15 1 Y 1 A LYS 511 ? A LYS 86 16 1 Y 1 A THR 512 ? A THR 87 17 1 Y 1 A LYS 513 ? A LYS 88 18 1 Y 1 A LYS 514 ? A LYS 89 19 1 Y 1 A LYS 515 ? A LYS 90 20 1 Y 1 A ILE 516 ? A ILE 91 21 1 Y 1 A LYS 517 ? A LYS 92 22 1 Y 1 A GLY 518 ? A GLY 93 23 1 Y 1 A ILE 519 ? A ILE 94 24 1 Y 1 B GLY 426 ? B GLY 1 25 1 Y 1 B SER 427 ? B SER 2 26 1 Y 1 B HIS 428 ? B HIS 3 27 1 Y 1 B MET 429 ? B MET 4 28 1 Y 1 B THR 430 ? B THR 5 29 1 Y 1 B ALA 431 ? B ALA 6 30 1 Y 1 B THR 432 ? B THR 7 31 1 Y 1 B THR 433 ? B THR 8 32 1 Y 1 B GLY 434 ? B GLY 9 33 1 Y 1 B PRO 435 ? B PRO 10 34 1 Y 1 B PRO 436 ? B PRO 11 35 1 Y 1 B PRO 437 ? B PRO 12 36 1 Y 1 B ARG 510 ? B ARG 85 37 1 Y 1 B LYS 511 ? B LYS 86 38 1 Y 1 B THR 512 ? B THR 87 39 1 Y 1 B LYS 513 ? B LYS 88 40 1 Y 1 B LYS 514 ? B LYS 89 41 1 Y 1 B LYS 515 ? B LYS 90 42 1 Y 1 B ILE 516 ? B ILE 91 43 1 Y 1 B LYS 517 ? B LYS 92 44 1 Y 1 B GLY 518 ? B GLY 93 45 1 Y 1 B ILE 519 ? B ILE 94 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 CYS N N N N 111 CYS CA C N R 112 CYS C C N N 113 CYS O O N N 114 CYS CB C N N 115 CYS SG S N N 116 CYS OXT O N N 117 CYS H H N N 118 CYS H2 H N N 119 CYS HA H N N 120 CYS HB2 H N N 121 CYS HB3 H N N 122 CYS HG H N N 123 CYS HXT H N N 124 DA OP3 O N N 125 DA P P N N 126 DA OP1 O N N 127 DA OP2 O N N 128 DA "O5'" O N N 129 DA "C5'" C N N 130 DA "C4'" C N R 131 DA "O4'" O N N 132 DA "C3'" C N S 133 DA "O3'" O N N 134 DA "C2'" C N N 135 DA "C1'" C N R 136 DA N9 N Y N 137 DA C8 C Y N 138 DA N7 N Y N 139 DA C5 C Y N 140 DA C6 C Y N 141 DA N6 N N N 142 DA N1 N Y N 143 DA C2 C Y N 144 DA N3 N Y N 145 DA C4 C Y N 146 DA HOP3 H N N 147 DA HOP2 H N N 148 DA "H5'" H N N 149 DA "H5''" H N N 150 DA "H4'" H N N 151 DA "H3'" H N N 152 DA "HO3'" H N N 153 DA "H2'" H N N 154 DA "H2''" H N N 155 DA "H1'" H N N 156 DA H8 H N N 157 DA H61 H N N 158 DA H62 H N N 159 DA H2 H N N 160 DC OP3 O N N 161 DC P P N N 162 DC OP1 O N N 163 DC OP2 O N N 164 DC "O5'" O N N 165 DC "C5'" C N N 166 DC "C4'" C N R 167 DC "O4'" O N N 168 DC "C3'" C N S 169 DC "O3'" O N N 170 DC "C2'" C N N 171 DC "C1'" C N R 172 DC N1 N N N 173 DC C2 C N N 174 DC O2 O N N 175 DC N3 N N N 176 DC C4 C N N 177 DC N4 N N N 178 DC C5 C N N 179 DC C6 C N N 180 DC HOP3 H N N 181 DC HOP2 H N N 182 DC "H5'" H N N 183 DC "H5''" H N N 184 DC "H4'" H N N 185 DC "H3'" H N N 186 DC "HO3'" H N N 187 DC "H2'" H N N 188 DC "H2''" H N N 189 DC "H1'" H N N 190 DC H41 H N N 191 DC H42 H N N 192 DC H5 H N N 193 DC H6 H N N 194 DG OP3 O N N 195 DG P P N N 196 DG OP1 O N N 197 DG OP2 O N N 198 DG "O5'" O N N 199 DG "C5'" C N N 200 DG "C4'" C N R 201 DG "O4'" O N N 202 DG "C3'" C N S 203 DG "O3'" O N N 204 DG "C2'" C N N 205 DG "C1'" C N R 206 DG N9 N Y N 207 DG C8 C Y N 208 DG N7 N Y N 209 DG C5 C Y N 210 DG C6 C N N 211 DG O6 O N N 212 DG N1 N N N 213 DG C2 C N N 214 DG N2 N N N 215 DG N3 N N N 216 DG C4 C Y N 217 DG HOP3 H N N 218 DG HOP2 H N N 219 DG "H5'" H N N 220 DG "H5''" H N N 221 DG "H4'" H N N 222 DG "H3'" H N N 223 DG "HO3'" H N N 224 DG "H2'" H N N 225 DG "H2''" H N N 226 DG "H1'" H N N 227 DG H8 H N N 228 DG H1 H N N 229 DG H21 H N N 230 DG H22 H N N 231 DT OP3 O N N 232 DT P P N N 233 DT OP1 O N N 234 DT OP2 O N N 235 DT "O5'" O N N 236 DT "C5'" C N N 237 DT "C4'" C N R 238 DT "O4'" O N N 239 DT "C3'" C N S 240 DT "O3'" O N N 241 DT "C2'" C N N 242 DT "C1'" C N R 243 DT N1 N N N 244 DT C2 C N N 245 DT O2 O N N 246 DT N3 N N N 247 DT C4 C N N 248 DT O4 O N N 249 DT C5 C N N 250 DT C7 C N N 251 DT C6 C N N 252 DT HOP3 H N N 253 DT HOP2 H N N 254 DT "H5'" H N N 255 DT "H5''" H N N 256 DT "H4'" H N N 257 DT "H3'" H N N 258 DT "HO3'" H N N 259 DT "H2'" H N N 260 DT "H2''" H N N 261 DT "H1'" H N N 262 DT H3 H N N 263 DT H71 H N N 264 DT H72 H N N 265 DT H73 H N N 266 DT H6 H N N 267 GLN N N N N 268 GLN CA C N S 269 GLN C C N N 270 GLN O O N N 271 GLN CB C N N 272 GLN CG C N N 273 GLN CD C N N 274 GLN OE1 O N N 275 GLN NE2 N N N 276 GLN OXT O N N 277 GLN H H N N 278 GLN H2 H N N 279 GLN HA H N N 280 GLN HB2 H N N 281 GLN HB3 H N N 282 GLN HG2 H N N 283 GLN HG3 H N N 284 GLN HE21 H N N 285 GLN HE22 H N N 286 GLN HXT H N N 287 GLU N N N N 288 GLU CA C N S 289 GLU C C N N 290 GLU O O N N 291 GLU CB C N N 292 GLU CG C N N 293 GLU CD C N N 294 GLU OE1 O N N 295 GLU OE2 O N N 296 GLU OXT O N N 297 GLU H H N N 298 GLU H2 H N N 299 GLU HA H N N 300 GLU HB2 H N N 301 GLU HB3 H N N 302 GLU HG2 H N N 303 GLU HG3 H N N 304 GLU HE2 H N N 305 GLU HXT H N N 306 GLY N N N N 307 GLY CA C N N 308 GLY C C N N 309 GLY O O N N 310 GLY OXT O N N 311 GLY H H N N 312 GLY H2 H N N 313 GLY HA2 H N N 314 GLY HA3 H N N 315 GLY HXT H N N 316 HIS N N N N 317 HIS CA C N S 318 HIS C C N N 319 HIS O O N N 320 HIS CB C N N 321 HIS CG C Y N 322 HIS ND1 N Y N 323 HIS CD2 C Y N 324 HIS CE1 C Y N 325 HIS NE2 N Y N 326 HIS OXT O N N 327 HIS H H N N 328 HIS H2 H N N 329 HIS HA H N N 330 HIS HB2 H N N 331 HIS HB3 H N N 332 HIS HD1 H N N 333 HIS HD2 H N N 334 HIS HE1 H N N 335 HIS HE2 H N N 336 HIS HXT H N N 337 HOH O O N N 338 HOH H1 H N N 339 HOH H2 H N N 340 ILE N N N N 341 ILE CA C N S 342 ILE C C N N 343 ILE O O N N 344 ILE CB C N S 345 ILE CG1 C N N 346 ILE CG2 C N N 347 ILE CD1 C N N 348 ILE OXT O N N 349 ILE H H N N 350 ILE H2 H N N 351 ILE HA H N N 352 ILE HB H N N 353 ILE HG12 H N N 354 ILE HG13 H N N 355 ILE HG21 H N N 356 ILE HG22 H N N 357 ILE HG23 H N N 358 ILE HD11 H N N 359 ILE HD12 H N N 360 ILE HD13 H N N 361 ILE HXT H N N 362 LEU N N N N 363 LEU CA C N S 364 LEU C C N N 365 LEU O O N N 366 LEU CB C N N 367 LEU CG C N N 368 LEU CD1 C N N 369 LEU CD2 C N N 370 LEU OXT O N N 371 LEU H H N N 372 LEU H2 H N N 373 LEU HA H N N 374 LEU HB2 H N N 375 LEU HB3 H N N 376 LEU HG H N N 377 LEU HD11 H N N 378 LEU HD12 H N N 379 LEU HD13 H N N 380 LEU HD21 H N N 381 LEU HD22 H N N 382 LEU HD23 H N N 383 LEU HXT H N N 384 LYS N N N N 385 LYS CA C N S 386 LYS C C N N 387 LYS O O N N 388 LYS CB C N N 389 LYS CG C N N 390 LYS CD C N N 391 LYS CE C N N 392 LYS NZ N N N 393 LYS OXT O N N 394 LYS H H N N 395 LYS H2 H N N 396 LYS HA H N N 397 LYS HB2 H N N 398 LYS HB3 H N N 399 LYS HG2 H N N 400 LYS HG3 H N N 401 LYS HD2 H N N 402 LYS HD3 H N N 403 LYS HE2 H N N 404 LYS HE3 H N N 405 LYS HZ1 H N N 406 LYS HZ2 H N N 407 LYS HZ3 H N N 408 LYS HXT H N N 409 MET N N N N 410 MET CA C N S 411 MET C C N N 412 MET O O N N 413 MET CB C N N 414 MET CG C N N 415 MET SD S N N 416 MET CE C N N 417 MET OXT O N N 418 MET H H N N 419 MET H2 H N N 420 MET HA H N N 421 MET HB2 H N N 422 MET HB3 H N N 423 MET HG2 H N N 424 MET HG3 H N N 425 MET HE1 H N N 426 MET HE2 H N N 427 MET HE3 H N N 428 MET HXT H N N 429 PHE N N N N 430 PHE CA C N S 431 PHE C C N N 432 PHE O O N N 433 PHE CB C N N 434 PHE CG C Y N 435 PHE CD1 C Y N 436 PHE CD2 C Y N 437 PHE CE1 C Y N 438 PHE CE2 C Y N 439 PHE CZ C Y N 440 PHE OXT O N N 441 PHE H H N N 442 PHE H2 H N N 443 PHE HA H N N 444 PHE HB2 H N N 445 PHE HB3 H N N 446 PHE HD1 H N N 447 PHE HD2 H N N 448 PHE HE1 H N N 449 PHE HE2 H N N 450 PHE HZ H N N 451 PHE HXT H N N 452 PRO N N N N 453 PRO CA C N S 454 PRO C C N N 455 PRO O O N N 456 PRO CB C N N 457 PRO CG C N N 458 PRO CD C N N 459 PRO OXT O N N 460 PRO H H N N 461 PRO HA H N N 462 PRO HB2 H N N 463 PRO HB3 H N N 464 PRO HG2 H N N 465 PRO HG3 H N N 466 PRO HD2 H N N 467 PRO HD3 H N N 468 PRO HXT H N N 469 SER N N N N 470 SER CA C N S 471 SER C C N N 472 SER O O N N 473 SER CB C N N 474 SER OG O N N 475 SER OXT O N N 476 SER H H N N 477 SER H2 H N N 478 SER HA H N N 479 SER HB2 H N N 480 SER HB3 H N N 481 SER HG H N N 482 SER HXT H N N 483 THR N N N N 484 THR CA C N S 485 THR C C N N 486 THR O O N N 487 THR CB C N R 488 THR OG1 O N N 489 THR CG2 C N N 490 THR OXT O N N 491 THR H H N N 492 THR H2 H N N 493 THR HA H N N 494 THR HB H N N 495 THR HG1 H N N 496 THR HG21 H N N 497 THR HG22 H N N 498 THR HG23 H N N 499 THR HXT H N N 500 TYR N N N N 501 TYR CA C N S 502 TYR C C N N 503 TYR O O N N 504 TYR CB C N N 505 TYR CG C Y N 506 TYR CD1 C Y N 507 TYR CD2 C Y N 508 TYR CE1 C Y N 509 TYR CE2 C Y N 510 TYR CZ C Y N 511 TYR OH O N N 512 TYR OXT O N N 513 TYR H H N N 514 TYR H2 H N N 515 TYR HA H N N 516 TYR HB2 H N N 517 TYR HB3 H N N 518 TYR HD1 H N N 519 TYR HD2 H N N 520 TYR HE1 H N N 521 TYR HE2 H N N 522 TYR HH H N N 523 TYR HXT H N N 524 VAL N N N N 525 VAL CA C N S 526 VAL C C N N 527 VAL O O N N 528 VAL CB C N N 529 VAL CG1 C N N 530 VAL CG2 C N N 531 VAL OXT O N N 532 VAL H H N N 533 VAL H2 H N N 534 VAL HA H N N 535 VAL HB H N N 536 VAL HG11 H N N 537 VAL HG12 H N N 538 VAL HG13 H N N 539 VAL HG21 H N N 540 VAL HG22 H N N 541 VAL HG23 H N N 542 VAL HXT H N N 543 ZN ZN ZN N N 544 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 ALA N CA sing N N 39 ALA N H sing N N 40 ALA N H2 sing N N 41 ALA CA C sing N N 42 ALA CA CB sing N N 43 ALA CA HA sing N N 44 ALA C O doub N N 45 ALA C OXT sing N N 46 ALA CB HB1 sing N N 47 ALA CB HB2 sing N N 48 ALA CB HB3 sing N N 49 ALA OXT HXT sing N N 50 ARG N CA sing N N 51 ARG N H sing N N 52 ARG N H2 sing N N 53 ARG CA C sing N N 54 ARG CA CB sing N N 55 ARG CA HA sing N N 56 ARG C O doub N N 57 ARG C OXT sing N N 58 ARG CB CG sing N N 59 ARG CB HB2 sing N N 60 ARG CB HB3 sing N N 61 ARG CG CD sing N N 62 ARG CG HG2 sing N N 63 ARG CG HG3 sing N N 64 ARG CD NE sing N N 65 ARG CD HD2 sing N N 66 ARG CD HD3 sing N N 67 ARG NE CZ sing N N 68 ARG NE HE sing N N 69 ARG CZ NH1 sing N N 70 ARG CZ NH2 doub N N 71 ARG NH1 HH11 sing N N 72 ARG NH1 HH12 sing N N 73 ARG NH2 HH21 sing N N 74 ARG NH2 HH22 sing N N 75 ARG OXT HXT sing N N 76 ASN N CA sing N N 77 ASN N H sing N N 78 ASN N H2 sing N N 79 ASN CA C sing N N 80 ASN CA CB sing N N 81 ASN CA HA sing N N 82 ASN C O doub N N 83 ASN C OXT sing N N 84 ASN CB CG sing N N 85 ASN CB HB2 sing N N 86 ASN CB HB3 sing N N 87 ASN CG OD1 doub N N 88 ASN CG ND2 sing N N 89 ASN ND2 HD21 sing N N 90 ASN ND2 HD22 sing N N 91 ASN OXT HXT sing N N 92 ASP N CA sing N N 93 ASP N H sing N N 94 ASP N H2 sing N N 95 ASP CA C sing N N 96 ASP CA CB sing N N 97 ASP CA HA sing N N 98 ASP C O doub N N 99 ASP C OXT sing N N 100 ASP CB CG sing N N 101 ASP CB HB2 sing N N 102 ASP CB HB3 sing N N 103 ASP CG OD1 doub N N 104 ASP CG OD2 sing N N 105 ASP OD2 HD2 sing N N 106 ASP OXT HXT sing N N 107 CYS N CA sing N N 108 CYS N H sing N N 109 CYS N H2 sing N N 110 CYS CA C sing N N 111 CYS CA CB sing N N 112 CYS CA HA sing N N 113 CYS C O doub N N 114 CYS C OXT sing N N 115 CYS CB SG sing N N 116 CYS CB HB2 sing N N 117 CYS CB HB3 sing N N 118 CYS SG HG sing N N 119 CYS OXT HXT sing N N 120 DA OP3 P sing N N 121 DA OP3 HOP3 sing N N 122 DA P OP1 doub N N 123 DA P OP2 sing N N 124 DA P "O5'" sing N N 125 DA OP2 HOP2 sing N N 126 DA "O5'" "C5'" sing N N 127 DA "C5'" "C4'" sing N N 128 DA "C5'" "H5'" sing N N 129 DA "C5'" "H5''" sing N N 130 DA "C4'" "O4'" sing N N 131 DA "C4'" "C3'" sing N N 132 DA "C4'" "H4'" sing N N 133 DA "O4'" "C1'" sing N N 134 DA "C3'" "O3'" sing N N 135 DA "C3'" "C2'" sing N N 136 DA "C3'" "H3'" sing N N 137 DA "O3'" "HO3'" sing N N 138 DA "C2'" "C1'" sing N N 139 DA "C2'" "H2'" sing N N 140 DA "C2'" "H2''" sing N N 141 DA "C1'" N9 sing N N 142 DA "C1'" "H1'" sing N N 143 DA N9 C8 sing Y N 144 DA N9 C4 sing Y N 145 DA C8 N7 doub Y N 146 DA C8 H8 sing N N 147 DA N7 C5 sing Y N 148 DA C5 C6 sing Y N 149 DA C5 C4 doub Y N 150 DA C6 N6 sing N N 151 DA C6 N1 doub Y N 152 DA N6 H61 sing N N 153 DA N6 H62 sing N N 154 DA N1 C2 sing Y N 155 DA C2 N3 doub Y N 156 DA C2 H2 sing N N 157 DA N3 C4 sing Y N 158 DC OP3 P sing N N 159 DC OP3 HOP3 sing N N 160 DC P OP1 doub N N 161 DC P OP2 sing N N 162 DC P "O5'" sing N N 163 DC OP2 HOP2 sing N N 164 DC "O5'" "C5'" sing N N 165 DC "C5'" "C4'" sing N N 166 DC "C5'" "H5'" sing N N 167 DC "C5'" "H5''" sing N N 168 DC "C4'" "O4'" sing N N 169 DC "C4'" "C3'" sing N N 170 DC "C4'" "H4'" sing N N 171 DC "O4'" "C1'" sing N N 172 DC "C3'" "O3'" sing N N 173 DC "C3'" "C2'" sing N N 174 DC "C3'" "H3'" sing N N 175 DC "O3'" "HO3'" sing N N 176 DC "C2'" "C1'" sing N N 177 DC "C2'" "H2'" sing N N 178 DC "C2'" "H2''" sing N N 179 DC "C1'" N1 sing N N 180 DC "C1'" "H1'" sing N N 181 DC N1 C2 sing N N 182 DC N1 C6 sing N N 183 DC C2 O2 doub N N 184 DC C2 N3 sing N N 185 DC N3 C4 doub N N 186 DC C4 N4 sing N N 187 DC C4 C5 sing N N 188 DC N4 H41 sing N N 189 DC N4 H42 sing N N 190 DC C5 C6 doub N N 191 DC C5 H5 sing N N 192 DC C6 H6 sing N N 193 DG OP3 P sing N N 194 DG OP3 HOP3 sing N N 195 DG P OP1 doub N N 196 DG P OP2 sing N N 197 DG P "O5'" sing N N 198 DG OP2 HOP2 sing N N 199 DG "O5'" "C5'" sing N N 200 DG "C5'" "C4'" sing N N 201 DG "C5'" "H5'" sing N N 202 DG "C5'" "H5''" sing N N 203 DG "C4'" "O4'" sing N N 204 DG "C4'" "C3'" sing N N 205 DG "C4'" "H4'" sing N N 206 DG "O4'" "C1'" sing N N 207 DG "C3'" "O3'" sing N N 208 DG "C3'" "C2'" sing N N 209 DG "C3'" "H3'" sing N N 210 DG "O3'" "HO3'" sing N N 211 DG "C2'" "C1'" sing N N 212 DG "C2'" "H2'" sing N N 213 DG "C2'" "H2''" sing N N 214 DG "C1'" N9 sing N N 215 DG "C1'" "H1'" sing N N 216 DG N9 C8 sing Y N 217 DG N9 C4 sing Y N 218 DG C8 N7 doub Y N 219 DG C8 H8 sing N N 220 DG N7 C5 sing Y N 221 DG C5 C6 sing N N 222 DG C5 C4 doub Y N 223 DG C6 O6 doub N N 224 DG C6 N1 sing N N 225 DG N1 C2 sing N N 226 DG N1 H1 sing N N 227 DG C2 N2 sing N N 228 DG C2 N3 doub N N 229 DG N2 H21 sing N N 230 DG N2 H22 sing N N 231 DG N3 C4 sing N N 232 DT OP3 P sing N N 233 DT OP3 HOP3 sing N N 234 DT P OP1 doub N N 235 DT P OP2 sing N N 236 DT P "O5'" sing N N 237 DT OP2 HOP2 sing N N 238 DT "O5'" "C5'" sing N N 239 DT "C5'" "C4'" sing N N 240 DT "C5'" "H5'" sing N N 241 DT "C5'" "H5''" sing N N 242 DT "C4'" "O4'" sing N N 243 DT "C4'" "C3'" sing N N 244 DT "C4'" "H4'" sing N N 245 DT "O4'" "C1'" sing N N 246 DT "C3'" "O3'" sing N N 247 DT "C3'" "C2'" sing N N 248 DT "C3'" "H3'" sing N N 249 DT "O3'" "HO3'" sing N N 250 DT "C2'" "C1'" sing N N 251 DT "C2'" "H2'" sing N N 252 DT "C2'" "H2''" sing N N 253 DT "C1'" N1 sing N N 254 DT "C1'" "H1'" sing N N 255 DT N1 C2 sing N N 256 DT N1 C6 sing N N 257 DT C2 O2 doub N N 258 DT C2 N3 sing N N 259 DT N3 C4 sing N N 260 DT N3 H3 sing N N 261 DT C4 O4 doub N N 262 DT C4 C5 sing N N 263 DT C5 C7 sing N N 264 DT C5 C6 doub N N 265 DT C7 H71 sing N N 266 DT C7 H72 sing N N 267 DT C7 H73 sing N N 268 DT C6 H6 sing N N 269 GLN N CA sing N N 270 GLN N H sing N N 271 GLN N H2 sing N N 272 GLN CA C sing N N 273 GLN CA CB sing N N 274 GLN CA HA sing N N 275 GLN C O doub N N 276 GLN C OXT sing N N 277 GLN CB CG sing N N 278 GLN CB HB2 sing N N 279 GLN CB HB3 sing N N 280 GLN CG CD sing N N 281 GLN CG HG2 sing N N 282 GLN CG HG3 sing N N 283 GLN CD OE1 doub N N 284 GLN CD NE2 sing N N 285 GLN NE2 HE21 sing N N 286 GLN NE2 HE22 sing N N 287 GLN OXT HXT sing N N 288 GLU N CA sing N N 289 GLU N H sing N N 290 GLU N H2 sing N N 291 GLU CA C sing N N 292 GLU CA CB sing N N 293 GLU CA HA sing N N 294 GLU C O doub N N 295 GLU C OXT sing N N 296 GLU CB CG sing N N 297 GLU CB HB2 sing N N 298 GLU CB HB3 sing N N 299 GLU CG CD sing N N 300 GLU CG HG2 sing N N 301 GLU CG HG3 sing N N 302 GLU CD OE1 doub N N 303 GLU CD OE2 sing N N 304 GLU OE2 HE2 sing N N 305 GLU OXT HXT sing N N 306 GLY N CA sing N N 307 GLY N H sing N N 308 GLY N H2 sing N N 309 GLY CA C sing N N 310 GLY CA HA2 sing N N 311 GLY CA HA3 sing N N 312 GLY C O doub N N 313 GLY C OXT sing N N 314 GLY OXT HXT sing N N 315 HIS N CA sing N N 316 HIS N H sing N N 317 HIS N H2 sing N N 318 HIS CA C sing N N 319 HIS CA CB sing N N 320 HIS CA HA sing N N 321 HIS C O doub N N 322 HIS C OXT sing N N 323 HIS CB CG sing N N 324 HIS CB HB2 sing N N 325 HIS CB HB3 sing N N 326 HIS CG ND1 sing Y N 327 HIS CG CD2 doub Y N 328 HIS ND1 CE1 doub Y N 329 HIS ND1 HD1 sing N N 330 HIS CD2 NE2 sing Y N 331 HIS CD2 HD2 sing N N 332 HIS CE1 NE2 sing Y N 333 HIS CE1 HE1 sing N N 334 HIS NE2 HE2 sing N N 335 HIS OXT HXT sing N N 336 HOH O H1 sing N N 337 HOH O H2 sing N N 338 ILE N CA sing N N 339 ILE N H sing N N 340 ILE N H2 sing N N 341 ILE CA C sing N N 342 ILE CA CB sing N N 343 ILE CA HA sing N N 344 ILE C O doub N N 345 ILE C OXT sing N N 346 ILE CB CG1 sing N N 347 ILE CB CG2 sing N N 348 ILE CB HB sing N N 349 ILE CG1 CD1 sing N N 350 ILE CG1 HG12 sing N N 351 ILE CG1 HG13 sing N N 352 ILE CG2 HG21 sing N N 353 ILE CG2 HG22 sing N N 354 ILE CG2 HG23 sing N N 355 ILE CD1 HD11 sing N N 356 ILE CD1 HD12 sing N N 357 ILE CD1 HD13 sing N N 358 ILE OXT HXT sing N N 359 LEU N CA sing N N 360 LEU N H sing N N 361 LEU N H2 sing N N 362 LEU CA C sing N N 363 LEU CA CB sing N N 364 LEU CA HA sing N N 365 LEU C O doub N N 366 LEU C OXT sing N N 367 LEU CB CG sing N N 368 LEU CB HB2 sing N N 369 LEU CB HB3 sing N N 370 LEU CG CD1 sing N N 371 LEU CG CD2 sing N N 372 LEU CG HG sing N N 373 LEU CD1 HD11 sing N N 374 LEU CD1 HD12 sing N N 375 LEU CD1 HD13 sing N N 376 LEU CD2 HD21 sing N N 377 LEU CD2 HD22 sing N N 378 LEU CD2 HD23 sing N N 379 LEU OXT HXT sing N N 380 LYS N CA sing N N 381 LYS N H sing N N 382 LYS N H2 sing N N 383 LYS CA C sing N N 384 LYS CA CB sing N N 385 LYS CA HA sing N N 386 LYS C O doub N N 387 LYS C OXT sing N N 388 LYS CB CG sing N N 389 LYS CB HB2 sing N N 390 LYS CB HB3 sing N N 391 LYS CG CD sing N N 392 LYS CG HG2 sing N N 393 LYS CG HG3 sing N N 394 LYS CD CE sing N N 395 LYS CD HD2 sing N N 396 LYS CD HD3 sing N N 397 LYS CE NZ sing N N 398 LYS CE HE2 sing N N 399 LYS CE HE3 sing N N 400 LYS NZ HZ1 sing N N 401 LYS NZ HZ2 sing N N 402 LYS NZ HZ3 sing N N 403 LYS OXT HXT sing N N 404 MET N CA sing N N 405 MET N H sing N N 406 MET N H2 sing N N 407 MET CA C sing N N 408 MET CA CB sing N N 409 MET CA HA sing N N 410 MET C O doub N N 411 MET C OXT sing N N 412 MET CB CG sing N N 413 MET CB HB2 sing N N 414 MET CB HB3 sing N N 415 MET CG SD sing N N 416 MET CG HG2 sing N N 417 MET CG HG3 sing N N 418 MET SD CE sing N N 419 MET CE HE1 sing N N 420 MET CE HE2 sing N N 421 MET CE HE3 sing N N 422 MET OXT HXT sing N N 423 PHE N CA sing N N 424 PHE N H sing N N 425 PHE N H2 sing N N 426 PHE CA C sing N N 427 PHE CA CB sing N N 428 PHE CA HA sing N N 429 PHE C O doub N N 430 PHE C OXT sing N N 431 PHE CB CG sing N N 432 PHE CB HB2 sing N N 433 PHE CB HB3 sing N N 434 PHE CG CD1 doub Y N 435 PHE CG CD2 sing Y N 436 PHE CD1 CE1 sing Y N 437 PHE CD1 HD1 sing N N 438 PHE CD2 CE2 doub Y N 439 PHE CD2 HD2 sing N N 440 PHE CE1 CZ doub Y N 441 PHE CE1 HE1 sing N N 442 PHE CE2 CZ sing Y N 443 PHE CE2 HE2 sing N N 444 PHE CZ HZ sing N N 445 PHE OXT HXT sing N N 446 PRO N CA sing N N 447 PRO N CD sing N N 448 PRO N H sing N N 449 PRO CA C sing N N 450 PRO CA CB sing N N 451 PRO CA HA sing N N 452 PRO C O doub N N 453 PRO C OXT sing N N 454 PRO CB CG sing N N 455 PRO CB HB2 sing N N 456 PRO CB HB3 sing N N 457 PRO CG CD sing N N 458 PRO CG HG2 sing N N 459 PRO CG HG3 sing N N 460 PRO CD HD2 sing N N 461 PRO CD HD3 sing N N 462 PRO OXT HXT sing N N 463 SER N CA sing N N 464 SER N H sing N N 465 SER N H2 sing N N 466 SER CA C sing N N 467 SER CA CB sing N N 468 SER CA HA sing N N 469 SER C O doub N N 470 SER C OXT sing N N 471 SER CB OG sing N N 472 SER CB HB2 sing N N 473 SER CB HB3 sing N N 474 SER OG HG sing N N 475 SER OXT HXT sing N N 476 THR N CA sing N N 477 THR N H sing N N 478 THR N H2 sing N N 479 THR CA C sing N N 480 THR CA CB sing N N 481 THR CA HA sing N N 482 THR C O doub N N 483 THR C OXT sing N N 484 THR CB OG1 sing N N 485 THR CB CG2 sing N N 486 THR CB HB sing N N 487 THR OG1 HG1 sing N N 488 THR CG2 HG21 sing N N 489 THR CG2 HG22 sing N N 490 THR CG2 HG23 sing N N 491 THR OXT HXT sing N N 492 TYR N CA sing N N 493 TYR N H sing N N 494 TYR N H2 sing N N 495 TYR CA C sing N N 496 TYR CA CB sing N N 497 TYR CA HA sing N N 498 TYR C O doub N N 499 TYR C OXT sing N N 500 TYR CB CG sing N N 501 TYR CB HB2 sing N N 502 TYR CB HB3 sing N N 503 TYR CG CD1 doub Y N 504 TYR CG CD2 sing Y N 505 TYR CD1 CE1 sing Y N 506 TYR CD1 HD1 sing N N 507 TYR CD2 CE2 doub Y N 508 TYR CD2 HD2 sing N N 509 TYR CE1 CZ doub Y N 510 TYR CE1 HE1 sing N N 511 TYR CE2 CZ sing Y N 512 TYR CE2 HE2 sing N N 513 TYR CZ OH sing N N 514 TYR OH HH sing N N 515 TYR OXT HXT sing N N 516 VAL N CA sing N N 517 VAL N H sing N N 518 VAL N H2 sing N N 519 VAL CA C sing N N 520 VAL CA CB sing N N 521 VAL CA HA sing N N 522 VAL C O doub N N 523 VAL C OXT sing N N 524 VAL CB CG1 sing N N 525 VAL CB CG2 sing N N 526 VAL CB HB sing N N 527 VAL CG1 HG11 sing N N 528 VAL CG1 HG12 sing N N 529 VAL CG1 HG13 sing N N 530 VAL CG2 HG21 sing N N 531 VAL CG2 HG22 sing N N 532 VAL CG2 HG23 sing N N 533 VAL OXT HXT sing N N 534 # _ndb_struct_conf_na.entry_id 5EMP _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DC 2 1_555 D DG 18 1_555 0.415 -0.148 -0.098 13.148 -5.921 0.481 1 C_DC2:DG19_D C 2 ? D 19 ? 19 1 1 C DA 3 1_555 D DT 17 1_555 -0.132 -0.041 0.399 10.364 -8.017 4.742 2 C_DA3:DT18_D C 3 ? D 18 ? 20 1 1 C DG 4 1_555 D DC 16 1_555 -0.039 -0.189 0.431 14.343 -11.182 1.739 3 C_DG4:DC17_D C 4 ? D 17 ? 19 1 1 C DA 5 1_555 D DT 15 1_555 -0.221 -0.257 -0.249 -3.967 -17.228 0.161 4 C_DA5:DT16_D C 5 ? D 16 ? 20 1 1 C DA 6 1_555 D DT 14 1_555 0.471 -0.221 0.080 -2.966 -11.260 5.091 5 C_DA6:DT15_D C 6 ? D 15 ? 20 1 1 C DC 7 1_555 D DG 13 1_555 0.268 -0.264 -0.120 4.417 -13.140 1.238 6 C_DC7:DG14_D C 7 ? D 14 ? 19 1 1 C DA 8 1_555 D DT 12 1_555 0.164 -0.091 -0.007 -4.757 -6.466 0.909 7 C_DA8:DT13_D C 8 ? D 13 ? 20 1 1 C DT 9 1_555 D DA 11 1_555 -0.112 0.009 -0.124 1.308 -12.143 5.266 8 C_DT9:DA12_D C 9 ? D 12 ? 20 1 1 C DG 10 1_555 D 5CM 10 1_555 0.816 -0.365 0.066 -14.103 -16.888 13.280 9 C_DG10:5CM11_D C 10 ? D 11 ? ? 1 1 C DA 11 1_555 D DT 9 1_555 -0.128 -0.146 -0.012 -5.355 -10.467 1.756 10 C_DA11:DT10_D C 11 ? D 10 ? 20 1 1 C DT 12 1_555 D DA 8 1_555 0.015 -0.082 0.200 -2.182 -6.984 3.263 11 C_DT12:DA9_D C 12 ? D 9 ? 20 1 1 C DG 13 1_555 D DC 7 1_555 -0.545 -0.156 0.348 6.581 -5.815 5.211 12 C_DG13:DC8_D C 13 ? D 8 ? 19 1 1 C DT 14 1_555 D DA 6 1_555 -0.380 -0.084 0.236 6.921 -10.432 -0.473 13 C_DT14:DA7_D C 14 ? D 7 ? 20 1 1 C DT 15 1_555 D DA 5 1_555 0.501 -0.262 -0.191 5.639 -14.270 4.041 14 C_DT15:DA6_D C 15 ? D 6 ? 20 1 1 C DC 16 1_555 D DG 4 1_555 -0.011 -0.249 0.393 -14.023 -12.220 -1.306 15 C_DC16:DG5_D C 16 ? D 5 ? 19 1 1 C DT 17 1_555 D DA 3 1_555 -0.010 -0.166 0.604 -12.124 -9.969 2.578 16 C_DT17:DA4_D C 17 ? D 4 ? 20 1 1 C DG 18 1_555 D DC 2 1_555 -0.052 -0.188 -0.018 -9.178 -7.885 -0.523 17 C_DG18:DC3_D C 18 ? D 3 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DC 2 1_555 D DG 18 1_555 C DA 3 1_555 D DT 17 1_555 -0.063 -0.131 3.278 -2.545 4.825 38.537 -0.783 -0.214 3.236 7.266 3.832 38.907 1 CC_DC2DA3:DT18DG19_DD C 2 ? D 19 ? C 3 ? D 18 ? 1 C DA 3 1_555 D DT 17 1_555 C DG 4 1_555 D DC 16 1_555 0.176 -0.513 3.301 -0.717 -1.791 32.066 -0.601 -0.448 3.319 -3.239 1.297 32.123 2 CC_DA3DG4:DC17DT18_DD C 3 ? D 18 ? C 4 ? D 17 ? 1 C DG 4 1_555 D DC 16 1_555 C DA 5 1_555 D DT 15 1_555 -0.091 -0.368 3.645 6.124 -0.103 38.913 -0.533 0.942 3.591 -0.154 -9.123 39.374 3 CC_DG4DA5:DT16DC17_DD C 4 ? D 17 ? C 5 ? D 16 ? 1 C DA 5 1_555 D DT 15 1_555 C DA 6 1_555 D DT 14 1_555 0.231 -0.164 3.135 -2.199 -2.377 41.570 0.010 -0.547 3.123 -3.343 3.092 41.691 4 CC_DA5DA6:DT15DT16_DD C 5 ? D 16 ? C 6 ? D 15 ? 1 C DA 6 1_555 D DT 14 1_555 C DC 7 1_555 D DG 13 1_555 0.236 -0.221 3.165 1.456 -4.127 35.848 0.210 -0.181 3.177 -6.674 -2.355 36.105 5 CC_DA6DC7:DG14DT15_DD C 6 ? D 15 ? C 7 ? D 14 ? 1 C DC 7 1_555 D DG 13 1_555 C DA 8 1_555 D DT 12 1_555 -0.059 -0.395 3.492 -1.722 9.292 35.090 -2.003 -0.159 3.284 15.076 2.794 36.301 6 CC_DC7DA8:DT13DG14_DD C 7 ? D 14 ? C 8 ? D 13 ? 1 C DA 8 1_555 D DT 12 1_555 C DT 9 1_555 D DA 11 1_555 -0.043 -0.876 3.204 2.103 -6.198 30.447 -0.441 0.485 3.303 -11.634 -3.947 31.126 7 CC_DA8DT9:DA12DT13_DD C 8 ? D 13 ? C 9 ? D 12 ? 1 C DT 9 1_555 D DA 11 1_555 C DG 10 1_555 D 5CM 10 1_555 0.377 0.502 3.702 -0.596 5.451 47.290 0.123 -0.522 3.730 6.769 0.740 47.589 8 CC_DT9DG10:5CM11DA12_DD C 9 ? D 12 ? C 10 ? D 11 ? 1 C DG 10 1_555 D 5CM 10 1_555 C DA 11 1_555 D DT 9 1_555 -0.429 0.029 3.123 -0.464 -0.360 26.958 0.150 0.808 3.129 -0.772 0.994 26.964 9 CC_DG10DA11:DT105CM11_DD C 10 ? D 11 ? C 11 ? D 10 ? 1 C DA 11 1_555 D DT 9 1_555 C DT 12 1_555 D DA 8 1_555 -0.151 -0.746 3.308 -2.168 -0.425 30.850 -1.315 -0.142 3.320 -0.798 4.069 30.927 10 CC_DA11DT12:DA9DT10_DD C 11 ? D 10 ? C 12 ? D 9 ? 1 C DT 12 1_555 D DA 8 1_555 C DG 13 1_555 D DC 7 1_555 0.185 -0.132 3.013 -1.264 6.767 32.407 -1.278 -0.520 2.918 11.957 2.234 33.111 11 CC_DT12DG13:DC8DA9_DD C 12 ? D 9 ? C 13 ? D 8 ? 1 C DG 13 1_555 D DC 7 1_555 C DT 14 1_555 D DA 6 1_555 -0.502 -0.135 3.389 0.814 -5.738 37.833 0.542 0.872 3.362 -8.786 -1.246 38.258 12 CC_DG13DT14:DA7DC8_DD C 13 ? D 8 ? C 14 ? D 7 ? 1 C DT 14 1_555 D DA 6 1_555 C DT 15 1_555 D DA 5 1_555 -0.018 -0.380 3.222 3.633 -1.230 42.258 -0.402 0.389 3.219 -1.702 -5.027 42.424 13 CC_DT14DT15:DA6DA7_DD C 14 ? D 7 ? C 15 ? D 6 ? 1 C DT 15 1_555 D DA 5 1_555 C DC 16 1_555 D DG 4 1_555 -0.014 -0.410 3.729 -4.412 0.916 34.926 -0.833 -0.724 3.691 1.519 7.314 35.206 14 CC_DT15DC16:DG5DA6_DD C 15 ? D 6 ? C 16 ? D 5 ? 1 C DC 16 1_555 D DG 4 1_555 C DT 17 1_555 D DA 3 1_555 -0.201 -0.510 3.291 -0.148 0.175 34.367 -0.891 0.316 3.289 0.297 0.251 34.368 15 CC_DC16DT17:DA4DG5_DD C 16 ? D 5 ? C 17 ? D 4 ? 1 C DT 17 1_555 D DA 3 1_555 C DG 18 1_555 D DC 2 1_555 0.053 -0.002 3.194 2.244 5.650 38.946 -0.657 0.181 3.161 8.412 -3.341 39.399 16 CC_DT17DG18:DC3DA4_DD C 17 ? D 4 ? C 18 ? D 3 ? # _atom_sites.entry_id 5EMP _atom_sites.fract_transf_matrix[1][1] 0.025459 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009951 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008925 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S ZN # loop_