HEADER LYASE 06-NOV-15 5EMU TITLE CRYSTAL STRUCTURE OF DEOXYRIBOSE-PHOSPHATE ALDOLASE FROM ESCHERICHIA TITLE 2 COLI (K58E-Y96W MUTANT) AFTER ACETALDEHYDE TREATMENT AND HEATING COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYRIBOSE-PHOSPHATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DERA,2-DEOXY-D-RIBOSE 5-PHOSPHATE ALDOLASE, COMPND 5 PHOSPHODEOXYRIBOALDOLASE,DEOXYRIBOALDOLASE; COMPND 6 EC: 4.1.2.4; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: DEOC, DRA, THYR, B4381, JW4344; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS DERA, TIM BARREL, LYASE, SUICIDE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR O.H.WEIERGRAEBER,M.DICK,J.PIETRUSZKA REVDAT 4 20-NOV-24 5EMU 1 REMARK REVDAT 3 10-JAN-24 5EMU 1 REMARK REVDAT 2 12-SEP-18 5EMU 1 JRNL REVDAT 1 04-MAY-16 5EMU 0 JRNL AUTH M.DICK,R.HARTMANN,O.H.WEIERGRABER,C.BISTERFELD,T.CLASSEN, JRNL AUTH 2 M.SCHWARTEN,P.NEUDECKER,D.WILLBOLD,J.PIETRUSZKA JRNL TITL MECHANISM-BASED INHIBITION OF AN ALDOLASE AT HIGH JRNL TITL 2 CONCENTRATIONS OF ITS NATURAL SUBSTRATE ACETALDEHYDE: JRNL TITL 3 STRUCTURAL INSIGHTS AND PROTECTIVE STRATEGIES. JRNL REF CHEM SCI V. 7 4492 2016 JRNL REFN ISSN 2041-6520 JRNL PMID 30155096 JRNL DOI 10.1039/C5SC04574F REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 34541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9583 - 3.4340 0.98 2796 148 0.1263 0.1380 REMARK 3 2 3.4340 - 2.7257 0.99 2777 146 0.1302 0.1494 REMARK 3 3 2.7257 - 2.3812 1.00 2774 147 0.1399 0.1646 REMARK 3 4 2.3812 - 2.1635 0.98 2728 141 0.1327 0.1662 REMARK 3 5 2.1635 - 2.0084 0.99 2753 145 0.1354 0.1616 REMARK 3 6 2.0084 - 1.8900 0.99 2730 144 0.1451 0.1918 REMARK 3 7 1.8900 - 1.7953 0.98 2713 144 0.1693 0.2000 REMARK 3 8 1.7953 - 1.7172 0.98 2698 144 0.2030 0.2363 REMARK 3 9 1.7172 - 1.6511 0.99 2722 143 0.2128 0.2566 REMARK 3 10 1.6511 - 1.5941 0.99 2739 145 0.2253 0.2654 REMARK 3 11 1.5941 - 1.5442 0.99 2706 140 0.2408 0.2656 REMARK 3 12 1.5442 - 1.5001 0.96 2678 140 0.2755 0.2987 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2117 REMARK 3 ANGLE : 0.887 2884 REMARK 3 CHIRALITY : 0.054 328 REMARK 3 PLANARITY : 0.006 384 REMARK 3 DIHEDRAL : 14.199 808 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2657 -13.9195 6.5426 REMARK 3 T TENSOR REMARK 3 T11: 0.1689 T22: 0.1773 REMARK 3 T33: 0.1106 T12: -0.0273 REMARK 3 T13: 0.0001 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 3.3002 L22: 3.2761 REMARK 3 L33: 1.3036 L12: -0.2006 REMARK 3 L13: 0.1751 L23: 0.1582 REMARK 3 S TENSOR REMARK 3 S11: 0.1396 S12: -0.4557 S13: 0.1453 REMARK 3 S21: 0.3673 S22: -0.1087 S23: -0.2053 REMARK 3 S31: -0.0300 S32: 0.0849 S33: -0.0171 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9289 -14.6645 -6.5087 REMARK 3 T TENSOR REMARK 3 T11: 0.1369 T22: 0.1498 REMARK 3 T33: 0.1597 T12: 0.0060 REMARK 3 T13: -0.0144 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 4.3701 L22: 2.6698 REMARK 3 L33: 1.3605 L12: 1.7220 REMARK 3 L13: 1.0801 L23: 0.3719 REMARK 3 S TENSOR REMARK 3 S11: -0.0928 S12: 0.0392 S13: 0.1771 REMARK 3 S21: -0.1495 S22: -0.0019 S23: 0.3095 REMARK 3 S31: -0.0775 S32: -0.2080 S33: 0.0966 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7171 -17.5257 -9.4920 REMARK 3 T TENSOR REMARK 3 T11: 0.1286 T22: 0.1378 REMARK 3 T33: 0.0983 T12: -0.0011 REMARK 3 T13: -0.0059 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.2147 L22: 2.1319 REMARK 3 L33: 0.9677 L12: 1.0204 REMARK 3 L13: 0.0910 L23: 0.2417 REMARK 3 S TENSOR REMARK 3 S11: -0.0943 S12: 0.1326 S13: 0.0706 REMARK 3 S21: -0.1707 S22: 0.0864 S23: 0.0108 REMARK 3 S31: -0.1037 S32: -0.0067 S33: 0.0053 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8938 -35.1524 -9.3114 REMARK 3 T TENSOR REMARK 3 T11: 0.1174 T22: 0.1116 REMARK 3 T33: 0.1291 T12: 0.0029 REMARK 3 T13: 0.0102 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 1.2573 L22: 2.2430 REMARK 3 L33: 2.0178 L12: 0.3688 REMARK 3 L13: -0.3206 L23: -1.0893 REMARK 3 S TENSOR REMARK 3 S11: -0.0478 S12: 0.1054 S13: -0.1946 REMARK 3 S21: -0.0794 S22: -0.0090 S23: 0.0257 REMARK 3 S31: 0.1359 S32: -0.0544 S33: 0.0546 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6038 -38.0203 -12.1543 REMARK 3 T TENSOR REMARK 3 T11: 0.1479 T22: 0.1277 REMARK 3 T33: 0.1637 T12: 0.0309 REMARK 3 T13: 0.0287 T23: -0.0353 REMARK 3 L TENSOR REMARK 3 L11: 2.0386 L22: 5.1874 REMARK 3 L33: 3.1209 L12: 1.6689 REMARK 3 L13: -0.3778 L23: -3.0670 REMARK 3 S TENSOR REMARK 3 S11: -0.0965 S12: 0.1256 S13: -0.3610 REMARK 3 S21: -0.3457 S22: -0.0966 S23: -0.2080 REMARK 3 S31: 0.3513 S32: 0.1851 S33: 0.2027 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8644 -34.3996 4.0011 REMARK 3 T TENSOR REMARK 3 T11: 0.1129 T22: 0.1015 REMARK 3 T33: 0.1217 T12: -0.0045 REMARK 3 T13: -0.0084 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 1.6727 L22: 1.2304 REMARK 3 L33: 1.0205 L12: 0.0356 REMARK 3 L13: 0.0463 L23: 0.2765 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: -0.1769 S13: -0.2335 REMARK 3 S21: 0.1165 S22: -0.0458 S23: -0.0877 REMARK 3 S31: 0.0952 S32: 0.0518 S33: 0.0333 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7297 -26.8393 4.0183 REMARK 3 T TENSOR REMARK 3 T11: 0.1313 T22: 0.1538 REMARK 3 T33: 0.0977 T12: -0.0058 REMARK 3 T13: -0.0103 T23: 0.0334 REMARK 3 L TENSOR REMARK 3 L11: 2.4572 L22: 3.4460 REMARK 3 L33: 2.4267 L12: -1.2264 REMARK 3 L13: -1.4589 L23: 1.5301 REMARK 3 S TENSOR REMARK 3 S11: -0.1101 S12: -0.2799 S13: -0.1811 REMARK 3 S21: 0.0813 S22: 0.0652 S23: -0.0040 REMARK 3 S31: 0.1096 S32: 0.1081 S33: 0.0612 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9364 -22.6922 13.5107 REMARK 3 T TENSOR REMARK 3 T11: 0.1984 T22: 0.2386 REMARK 3 T33: 0.1263 T12: -0.0230 REMARK 3 T13: -0.0104 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 6.4697 L22: 2.4109 REMARK 3 L33: 1.1109 L12: -2.7350 REMARK 3 L13: -1.3414 L23: 0.6216 REMARK 3 S TENSOR REMARK 3 S11: -0.1880 S12: -0.5832 S13: -0.0901 REMARK 3 S21: 0.3106 S22: 0.1798 S23: -0.0625 REMARK 3 S31: 0.0510 S32: 0.0648 S33: 0.0335 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6547 -16.7390 5.5437 REMARK 3 T TENSOR REMARK 3 T11: 0.1474 T22: 0.1088 REMARK 3 T33: 0.1157 T12: -0.0178 REMARK 3 T13: 0.0060 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 2.8324 L22: 1.0054 REMARK 3 L33: 1.6360 L12: -0.2062 REMARK 3 L13: -0.2500 L23: 0.2494 REMARK 3 S TENSOR REMARK 3 S11: 0.1223 S12: -0.0877 S13: 0.0694 REMARK 3 S21: 0.0041 S22: -0.0690 S23: -0.0882 REMARK 3 S31: -0.0966 S32: 0.0044 S33: -0.0650 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EMU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215100. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34544 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 47.934 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5EKY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, 2-PROPANOL, HEPES BUFFER, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.39000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.39000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 432 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 564 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 609 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 252 REMARK 465 GLY A 253 REMARK 465 LYS A 254 REMARK 465 SER A 255 REMARK 465 ALA A 256 REMARK 465 SER A 257 REMARK 465 SER A 258 REMARK 465 TYR A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CE NZ REMARK 470 GLU A 27 CD OE1 OE2 REMARK 470 LYS A 246 CE NZ REMARK 470 GLY A 251 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 167 C3 1BO A 301 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 141 61.80 61.42 REMARK 500 LYS A 146 -54.49 70.34 REMARK 500 LYS A 146 -56.00 70.34 REMARK 500 ASN A 176 -130.72 -115.15 REMARK 500 SER A 238 -74.00 -142.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1BO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EKY RELATED DB: PDB REMARK 900 RELATED ID: 5EL1 RELATED DB: PDB DBREF 5EMU A 1 259 UNP P0A6L0 DEOC_ECOLI 1 259 SEQADV 5EMU GLU A 58 UNP P0A6L0 LYS 58 ENGINEERED MUTATION SEQADV 5EMU TRP A 96 UNP P0A6L0 TYR 96 ENGINEERED MUTATION SEQADV 5EMU HIS A 260 UNP P0A6L0 EXPRESSION TAG SEQADV 5EMU HIS A 261 UNP P0A6L0 EXPRESSION TAG SEQADV 5EMU HIS A 262 UNP P0A6L0 EXPRESSION TAG SEQADV 5EMU HIS A 263 UNP P0A6L0 EXPRESSION TAG SEQADV 5EMU HIS A 264 UNP P0A6L0 EXPRESSION TAG SEQADV 5EMU HIS A 265 UNP P0A6L0 EXPRESSION TAG SEQRES 1 A 265 MET THR ASP LEU LYS ALA SER SER LEU ARG ALA LEU LYS SEQRES 2 A 265 LEU MET ASP LEU THR THR LEU ASN ASP ASP ASP THR ASP SEQRES 3 A 265 GLU LYS VAL ILE ALA LEU CYS HIS GLN ALA LYS THR PRO SEQRES 4 A 265 VAL GLY ASN THR ALA ALA ILE CYS ILE TYR PRO ARG PHE SEQRES 5 A 265 ILE PRO ILE ALA ARG GLU THR LEU LYS GLU GLN GLY THR SEQRES 6 A 265 PRO GLU ILE ARG ILE ALA THR VAL THR ASN PHE PRO HIS SEQRES 7 A 265 GLY ASN ASP ASP ILE ASP ILE ALA LEU ALA GLU THR ARG SEQRES 8 A 265 ALA ALA ILE ALA TRP GLY ALA ASP GLU VAL ASP VAL VAL SEQRES 9 A 265 PHE PRO TYR ARG ALA LEU MET ALA GLY ASN GLU GLN VAL SEQRES 10 A 265 GLY PHE ASP LEU VAL LYS ALA CYS LYS GLU ALA CYS ALA SEQRES 11 A 265 ALA ALA ASN VAL LEU LEU LYS VAL ILE ILE GLU THR GLY SEQRES 12 A 265 GLU LEU LYS ASP GLU ALA LEU ILE ARG LYS ALA SER GLU SEQRES 13 A 265 ILE SER ILE LYS ALA GLY ALA ASP PHE ILE LYS THR SER SEQRES 14 A 265 THR GLY LYS VAL ALA VAL ASN ALA THR PRO GLU SER ALA SEQRES 15 A 265 ARG ILE MET MET GLU VAL ILE ARG ASP MET GLY VAL GLU SEQRES 16 A 265 LYS THR VAL GLY PHE LYS PRO ALA GLY GLY VAL ARG THR SEQRES 17 A 265 ALA GLU ASP ALA GLN LYS TYR LEU ALA ILE ALA ASP GLU SEQRES 18 A 265 LEU PHE GLY ALA ASP TRP ALA ASP ALA ARG HIS TYR ARG SEQRES 19 A 265 PHE GLY ALA SER SER LEU LEU ALA SER LEU LEU LYS ALA SEQRES 20 A 265 LEU GLY HIS GLY ASP GLY LYS SER ALA SER SER TYR HIS SEQRES 21 A 265 HIS HIS HIS HIS HIS HET 1BO A 301 5 HET EPE A 302 15 HETNAM 1BO 1-BUTANOL HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN 1BO BUTAN-1-OL HETSYN EPE HEPES FORMUL 2 1BO C4 H10 O FORMUL 3 EPE C8 H18 N2 O4 S FORMUL 4 HOH *301(H2 O) HELIX 1 AA1 ASP A 3 LEU A 14 1 12 HELIX 2 AA2 THR A 25 ALA A 36 1 12 HELIX 3 AA3 TYR A 49 ARG A 51 5 3 HELIX 4 AA4 PHE A 52 GLN A 63 1 12 HELIX 5 AA5 ASP A 82 GLY A 97 1 16 HELIX 6 AA6 PRO A 106 ALA A 112 1 7 HELIX 7 AA7 GLU A 115 ALA A 132 1 18 HELIX 8 AA8 GLU A 141 LYS A 146 1 6 HELIX 9 AA9 ASP A 147 ALA A 161 1 15 HELIX 10 AB1 THR A 178 MET A 192 1 15 HELIX 11 AB2 THR A 208 GLY A 224 1 17 HELIX 12 AB3 SER A 239 LEU A 248 1 10 SHEET 1 AA1 8 GLY A 199 LYS A 201 0 SHEET 2 AA1 8 PHE A 165 LYS A 167 1 N ILE A 166 O GLY A 199 SHEET 3 AA1 8 LEU A 135 ILE A 139 1 N VAL A 138 O LYS A 167 SHEET 4 AA1 8 GLU A 100 VAL A 104 1 N VAL A 103 O ILE A 139 SHEET 5 AA1 8 ARG A 69 THR A 74 1 N THR A 72 O ASP A 102 SHEET 6 AA1 8 ALA A 45 CYS A 47 1 N ILE A 46 O ALA A 71 SHEET 7 AA1 8 MET A 15 THR A 18 1 N LEU A 17 O ALA A 45 SHEET 8 AA1 8 PHE A 235 ALA A 237 1 O PHE A 235 N ASP A 16 SHEET 1 AA2 2 LYS A 37 THR A 38 0 SHEET 2 AA2 2 GLY A 41 ASN A 42 -1 O GLY A 41 N THR A 38 LINK SG CYS A 47 C2 1BO A 301 1555 1555 1.83 LINK NZ LYS A 167 C4 1BO A 301 1555 1555 1.38 CISPEP 1 PHE A 76 PRO A 77 0 -2.07 SITE 1 AC1 7 THR A 18 CYS A 47 VAL A 73 ASP A 102 SITE 2 AC1 7 LYS A 167 THR A 170 LYS A 201 SITE 1 AC2 11 TYR A 49 PRO A 50 ARG A 51 PHE A 76 SITE 2 AC2 11 HIS A 78 GLU A 89 ALA A 174 HOH A 417 SITE 3 AC2 11 HOH A 447 HOH A 564 HOH A 592 CRYST1 110.780 53.300 37.860 90.00 98.31 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009027 0.000000 0.001319 0.00000 SCALE2 0.000000 0.018762 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026694 0.00000