HEADER SIGNALING PROTEIN 09-NOV-15 5ENC TITLE CRYSTAL STRUCTURE OF THE SECOND BROMODOMAIN OF PLECKSTRIN HOMOLOGY TITLE 2 DOMAIN INTERACTING PROTEIN (PHIP) IN COMPLEX WITH N-(2,6- TITLE 3 DICHLOROBENZYL)ACETAMIDE (SGC - DIAMOND I04-1 FRAGMENT SCREENING) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PH-INTERACTING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BROMODOMAIN, UNP RESIDUES 1315-1440; COMPND 5 SYNONYM: PHIP,IRS-1 PH DOMAIN-BINDING PROTEIN,WD REPEAT-CONTAINING COMPND 6 PROTEIN 11; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PHIP, WDR11; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS BROMODOMAIN, PHIP, CRYSTALLOGRAPHIC FRAGMENT SCREEN, STRUCTURAL KEYWDS 2 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSCRIPTION, KEYWDS 3 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.KROJER,R.TALON,P.COLLINS,A.BRADLEY,O.COX,A.SZYKOWSKA,N.BURGESS- AUTHOR 2 BROWN,P.BRENNAN,C.BOUNTRA,C.H.ARROWSMITH,A.EDWARDS,F.VON DELFT, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 10-JAN-24 5ENC 1 REMARK REVDAT 2 11-JUL-18 5ENC 1 JRNL REVDAT 1 27-APR-16 5ENC 0 JRNL AUTH O.B.COX,T.KROJER,P.COLLINS,O.MONTEIRO,R.TALON,A.BRADLEY, JRNL AUTH 2 O.FEDOROV,J.AMIN,B.D.MARSDEN,J.SPENCER,F.VON DELFT, JRNL AUTH 3 P.E.BRENNAN JRNL TITL A POISED FRAGMENT LIBRARY ENABLES RAPID SYNTHETIC EXPANSION JRNL TITL 2 YIELDING THE FIRST REPORTED INHIBITORS OF PHIP(2), AN JRNL TITL 3 ATYPICAL BROMODOMAIN. JRNL REF CHEM SCI V. 7 2322 2016 JRNL REFN ISSN 2041-6520 JRNL PMID 29910922 JRNL DOI 10.1039/C5SC03115J REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 17845 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 933 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1290 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1018 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.16000 REMARK 3 B22 (A**2) : 1.65000 REMARK 3 B33 (A**2) : -0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.491 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1070 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 978 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1440 ; 1.662 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2258 ; 1.024 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 125 ; 6.237 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 55 ;31.796 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 188 ;12.982 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;10.797 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 149 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1237 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 252 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 500 ; 1.340 ; 2.074 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 501 ; 1.339 ; 2.076 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 628 ; 2.086 ; 3.109 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1313 A 1319 REMARK 3 ORIGIN FOR THE GROUP (A): 8.6186 20.4281 -11.3141 REMARK 3 T TENSOR REMARK 3 T11: 0.0520 T22: 0.0438 REMARK 3 T33: 0.1202 T12: -0.0358 REMARK 3 T13: 0.0114 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 1.8889 L22: 7.4994 REMARK 3 L33: 1.7900 L12: 3.5208 REMARK 3 L13: -1.6479 L23: -3.6460 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: -0.1026 S13: -0.1362 REMARK 3 S21: 0.1162 S22: -0.1726 S23: -0.3039 REMARK 3 S31: -0.0618 S32: 0.0755 S33: 0.1473 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1320 A 1334 REMARK 3 ORIGIN FOR THE GROUP (A): -6.5297 16.9820 -5.3996 REMARK 3 T TENSOR REMARK 3 T11: 0.0881 T22: 0.0147 REMARK 3 T33: 0.1151 T12: -0.0214 REMARK 3 T13: -0.0132 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 3.1672 L22: 0.1679 REMARK 3 L33: 1.0166 L12: 0.6544 REMARK 3 L13: -0.3038 L23: 0.1001 REMARK 3 S TENSOR REMARK 3 S11: 0.0802 S12: -0.1442 S13: 0.2337 REMARK 3 S21: 0.0050 S22: -0.0242 S23: 0.0230 REMARK 3 S31: -0.0293 S32: 0.0107 S33: -0.0560 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1335 A 1356 REMARK 3 ORIGIN FOR THE GROUP (A): -22.2676 2.0986 -5.5145 REMARK 3 T TENSOR REMARK 3 T11: 0.1124 T22: 0.1013 REMARK 3 T33: 0.0200 T12: -0.0382 REMARK 3 T13: 0.0107 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 1.5278 L22: 3.3454 REMARK 3 L33: 0.5045 L12: 0.5782 REMARK 3 L13: -0.0790 L23: 1.2209 REMARK 3 S TENSOR REMARK 3 S11: -0.1574 S12: -0.1748 S13: 0.0298 REMARK 3 S21: 0.2531 S22: 0.0688 S23: 0.2411 REMARK 3 S31: 0.1349 S32: 0.0614 S33: 0.0887 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1357 A 1395 REMARK 3 ORIGIN FOR THE GROUP (A): -10.3509 5.6451 -10.5925 REMARK 3 T TENSOR REMARK 3 T11: 0.1213 T22: 0.0489 REMARK 3 T33: 0.0854 T12: -0.0256 REMARK 3 T13: -0.0408 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 1.9312 L22: 0.5433 REMARK 3 L33: 1.3210 L12: 1.0092 REMARK 3 L13: 0.5507 L23: 0.4005 REMARK 3 S TENSOR REMARK 3 S11: -0.0509 S12: 0.1058 S13: -0.1123 REMARK 3 S21: 0.0079 S22: 0.0403 S23: -0.0740 REMARK 3 S31: 0.1886 S32: -0.1840 S33: 0.0107 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1396 A 1436 REMARK 3 ORIGIN FOR THE GROUP (A): -10.4387 15.0864 -16.7983 REMARK 3 T TENSOR REMARK 3 T11: 0.0570 T22: 0.0373 REMARK 3 T33: 0.1275 T12: -0.0248 REMARK 3 T13: -0.0008 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 3.5219 L22: 0.7022 REMARK 3 L33: 0.7109 L12: 1.4299 REMARK 3 L13: -0.4136 L23: 0.1099 REMARK 3 S TENSOR REMARK 3 S11: -0.0437 S12: 0.2353 S13: 0.1641 REMARK 3 S21: -0.0308 S22: 0.0639 S23: 0.0425 REMARK 3 S31: -0.0089 S32: -0.1057 S33: -0.0201 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5ENC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215222. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92001 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18820 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 28.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.72600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3MB3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5 , 0.15M MAGNESIUM REMARK 280 CHLORIDE , 32% PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.34350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.79100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.34350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.79100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 1310 REMARK 465 PHE A 1311 REMARK 465 GLN A 1312 REMARK 465 ILE A 1437 REMARK 465 THR A 1438 REMARK 465 LYS A 1439 REMARK 465 ARG A 1440 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A1313 OG REMARK 470 LEU A1347 CG CD1 CD2 REMARK 470 LEU A1348 CG CD1 CD2 REMARK 470 THR A1436 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 1350 PRO A 1351 -145.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5QD A 1503 DBREF 5ENC A 1315 1440 UNP Q8WWQ0 PHIP_HUMAN 1315 1440 SEQADV 5ENC TYR A 1310 UNP Q8WWQ0 EXPRESSION TAG SEQADV 5ENC PHE A 1311 UNP Q8WWQ0 EXPRESSION TAG SEQADV 5ENC GLN A 1312 UNP Q8WWQ0 EXPRESSION TAG SEQADV 5ENC SER A 1313 UNP Q8WWQ0 EXPRESSION TAG SEQADV 5ENC MET A 1314 UNP Q8WWQ0 EXPRESSION TAG SEQRES 1 A 131 TYR PHE GLN SER MET SER TYR ASP ILE GLN ALA TRP LYS SEQRES 2 A 131 LYS GLN CYS GLU GLU LEU LEU ASN LEU ILE PHE GLN CYS SEQRES 3 A 131 GLU ASP SER GLU PRO PHE ARG GLN PRO VAL ASP LEU LEU SEQRES 4 A 131 GLU TYR PRO ASP TYR ARG ASP ILE ILE ASP THR PRO MET SEQRES 5 A 131 ASP PHE ALA THR VAL ARG GLU THR LEU GLU ALA GLY ASN SEQRES 6 A 131 TYR GLU SER PRO MET GLU LEU CYS LYS ASP VAL ARG LEU SEQRES 7 A 131 ILE PHE SER ASN SER LYS ALA TYR THR PRO SER LYS ARG SEQRES 8 A 131 SER ARG ILE TYR SER MET SER LEU ARG LEU SER ALA PHE SEQRES 9 A 131 PHE GLU GLU HIS ILE SER SER VAL LEU SER ASP TYR LYS SEQRES 10 A 131 SER ALA LEU ARG PHE HIS LYS ARG ASN THR ILE THR LYS SEQRES 11 A 131 ARG HET EDO A1501 4 HET EDO A1502 4 HET 5QD A1503 13 HETNAM EDO 1,2-ETHANEDIOL HETNAM 5QD ~{N}-[[2,6-BIS(CHLORANYL)PHENYL]METHYL]ETHANAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 2(C2 H6 O2) FORMUL 4 5QD C9 H9 CL2 N O FORMUL 5 HOH *180(H2 O) HELIX 1 AA1 ALA A 1320 CYS A 1335 1 16 HELIX 2 AA2 GLU A 1336 ARG A 1342 5 7 HELIX 3 AA3 ASP A 1352 ILE A 1357 1 6 HELIX 4 AA4 ASP A 1362 ALA A 1372 1 11 HELIX 5 AA5 SER A 1377 THR A 1396 1 20 HELIX 6 AA6 SER A 1401 THR A 1436 1 36 SITE 1 AC1 5 LYS A1393 TYR A1404 SER A1407 LEU A1408 SITE 2 AC1 5 HOH A1625 SITE 1 AC2 3 THR A1365 GLU A1368 HOH A1682 SITE 1 AC3 4 PRO A1340 VAL A1345 HOH A1610 HOH A1619 CRYST1 60.687 91.582 24.033 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016478 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010919 0.000000 0.00000 SCALE3 0.000000 0.000000 0.041609 0.00000