HEADER SIGNALING PROTEIN 09-NOV-15 5ENJ TITLE CRYSTAL STRUCTURE OF THE SECOND BROMODOMAIN OF PLECKSTRIN HOMOLOGY TITLE 2 DOMAIN INTERACTING PROTEIN (PHIP) IN COMPLEX WITH COMPOUND-14 N11530 TITLE 3 (SGC - DIAMOND I04-1 FRAGMENT SCREENING) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PH-INTERACTING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BROMODOMAIN, UNP RESIDUES 1315-1440; COMPND 5 SYNONYM: PHIP,IRS-1 PH DOMAIN-BINDING PROTEIN,WD REPEAT-CONTAINING COMPND 6 PROTEIN 11; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PHIP, WDR11; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS BROMODOMAIN, PHIP, CRYSTALLOGRAPHIC FRAGMENT SCREEN, STRUCTURAL KEYWDS 2 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSCRIPTION, KEYWDS 3 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.KROJER,R.TALON,P.COLLINS,A.BRADLEY,O.COX,A.SZYKOWSKA,N.BURGESS- AUTHOR 2 BROWN,P.BRENNAN,C.BOUNTRA,C.H.ARROWSMITH,A.EDWARDS,F.VON DELFT, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 10-JAN-24 5ENJ 1 REMARK REVDAT 2 11-JUL-18 5ENJ 1 JRNL REVDAT 1 27-APR-16 5ENJ 0 JRNL AUTH O.B.COX,T.KROJER,P.COLLINS,O.MONTEIRO,R.TALON,A.BRADLEY, JRNL AUTH 2 O.FEDOROV,J.AMIN,B.D.MARSDEN,J.SPENCER,F.VON DELFT, JRNL AUTH 3 P.E.BRENNAN JRNL TITL A POISED FRAGMENT LIBRARY ENABLES RAPID SYNTHETIC EXPANSION JRNL TITL 2 YIELDING THE FIRST REPORTED INHIBITORS OF PHIP(2), AN JRNL TITL 3 ATYPICAL BROMODOMAIN. JRNL REF CHEM SCI V. 7 2322 2016 JRNL REFN ISSN 2041-6520 JRNL PMID 29910922 JRNL DOI 10.1039/C5SC03115J REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 16004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 861 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1022 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1020 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.22000 REMARK 3 B22 (A**2) : 3.00000 REMARK 3 B33 (A**2) : -1.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.737 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1057 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 976 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1425 ; 1.855 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2255 ; 1.107 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 122 ; 7.112 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ;30.476 ;23.519 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 191 ;14.798 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;16.220 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 149 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1217 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 248 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 491 ; 1.462 ; 2.100 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 490 ; 1.453 ; 2.099 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 615 ; 2.185 ; 3.159 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1313 A 1334 REMARK 3 ORIGIN FOR THE GROUP (A): -2.2813 17.9435 -7.0364 REMARK 3 T TENSOR REMARK 3 T11: 0.0930 T22: 0.1079 REMARK 3 T33: 0.2838 T12: -0.0765 REMARK 3 T13: 0.0165 T23: -0.0999 REMARK 3 L TENSOR REMARK 3 L11: 1.7504 L22: 0.8681 REMARK 3 L33: 0.0457 L12: 1.2187 REMARK 3 L13: 0.2644 L23: 0.1783 REMARK 3 S TENSOR REMARK 3 S11: 0.0390 S12: -0.2403 S13: 0.1544 REMARK 3 S21: -0.0121 S22: -0.1153 S23: 0.0486 REMARK 3 S31: -0.0029 S32: -0.0407 S33: 0.0763 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1335 A 1356 REMARK 3 ORIGIN FOR THE GROUP (A): -22.3585 1.5211 -5.2191 REMARK 3 T TENSOR REMARK 3 T11: 0.2480 T22: 0.2993 REMARK 3 T33: 0.3026 T12: 0.0456 REMARK 3 T13: 0.1729 T23: 0.2068 REMARK 3 L TENSOR REMARK 3 L11: 4.7431 L22: 0.5888 REMARK 3 L33: 0.1404 L12: 1.3553 REMARK 3 L13: -0.3441 L23: 0.0535 REMARK 3 S TENSOR REMARK 3 S11: -0.2444 S12: -0.5067 S13: 0.0763 REMARK 3 S21: 0.0755 S22: 0.0454 S23: 0.2681 REMARK 3 S31: 0.1445 S32: 0.1545 S33: 0.1990 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1357 A 1395 REMARK 3 ORIGIN FOR THE GROUP (A): -10.6610 5.6474 -10.3667 REMARK 3 T TENSOR REMARK 3 T11: 0.1418 T22: 0.0774 REMARK 3 T33: 0.1764 T12: -0.0506 REMARK 3 T13: -0.0241 T23: -0.0630 REMARK 3 L TENSOR REMARK 3 L11: 0.8771 L22: 0.3264 REMARK 3 L33: 1.6812 L12: 0.5144 REMARK 3 L13: 0.5573 L23: 0.3276 REMARK 3 S TENSOR REMARK 3 S11: -0.0607 S12: -0.0172 S13: -0.0173 REMARK 3 S21: -0.0281 S22: 0.0167 S23: -0.0751 REMARK 3 S31: 0.1970 S32: -0.2490 S33: 0.0440 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1396 A 1435 REMARK 3 ORIGIN FOR THE GROUP (A): -11.0704 15.0486 -16.7080 REMARK 3 T TENSOR REMARK 3 T11: 0.0969 T22: 0.0368 REMARK 3 T33: 0.2334 T12: -0.0486 REMARK 3 T13: 0.0075 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 3.6429 L22: 0.4823 REMARK 3 L33: 1.0338 L12: 1.1287 REMARK 3 L13: -0.0552 L23: 0.3440 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: 0.0894 S13: 0.2292 REMARK 3 S21: -0.0261 S22: 0.0093 S23: 0.0380 REMARK 3 S31: -0.0253 S32: -0.0909 S33: -0.0082 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5ENJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215231. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.6 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16909 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 28.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.83900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3MB3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5 , 0.15M MAGNESIUM REMARK 280 CHLORIDE , 32% PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.50700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.63000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.50700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.63000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 50 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A1502 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 1310 REMARK 465 PHE A 1311 REMARK 465 GLN A 1312 REMARK 465 THR A 1436 REMARK 465 ILE A 1437 REMARK 465 THR A 1438 REMARK 465 LYS A 1439 REMARK 465 ARG A 1440 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 1352 O HOH A 1601 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A1317 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A1358 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A1400 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 1313 MET A 1314 -143.88 REMARK 500 TYR A 1350 PRO A 1351 -146.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5Q9 A 1501 DBREF 5ENJ A 1315 1440 UNP Q8WWQ0 PHIP_HUMAN 1315 1440 SEQADV 5ENJ TYR A 1310 UNP Q8WWQ0 EXPRESSION TAG SEQADV 5ENJ PHE A 1311 UNP Q8WWQ0 EXPRESSION TAG SEQADV 5ENJ GLN A 1312 UNP Q8WWQ0 EXPRESSION TAG SEQADV 5ENJ SER A 1313 UNP Q8WWQ0 EXPRESSION TAG SEQADV 5ENJ MET A 1314 UNP Q8WWQ0 EXPRESSION TAG SEQRES 1 A 131 TYR PHE GLN SER MET SER TYR ASP ILE GLN ALA TRP LYS SEQRES 2 A 131 LYS GLN CYS GLU GLU LEU LEU ASN LEU ILE PHE GLN CYS SEQRES 3 A 131 GLU ASP SER GLU PRO PHE ARG GLN PRO VAL ASP LEU LEU SEQRES 4 A 131 GLU TYR PRO ASP TYR ARG ASP ILE ILE ASP THR PRO MET SEQRES 5 A 131 ASP PHE ALA THR VAL ARG GLU THR LEU GLU ALA GLY ASN SEQRES 6 A 131 TYR GLU SER PRO MET GLU LEU CYS LYS ASP VAL ARG LEU SEQRES 7 A 131 ILE PHE SER ASN SER LYS ALA TYR THR PRO SER LYS ARG SEQRES 8 A 131 SER ARG ILE TYR SER MET SER LEU ARG LEU SER ALA PHE SEQRES 9 A 131 PHE GLU GLU HIS ILE SER SER VAL LEU SER ASP TYR LYS SEQRES 10 A 131 SER ALA LEU ARG PHE HIS LYS ARG ASN THR ILE THR LYS SEQRES 11 A 131 ARG HET 5Q9 A1501 14 HET MG A1502 1 HETNAM 5Q9 ~{N}-[[2,6-BIS(CHLORANYL)PHENYL]METHYL]-~{N}-METHYL- HETNAM 2 5Q9 ETHANAMIDE HETNAM MG MAGNESIUM ION FORMUL 2 5Q9 C10 H11 CL2 N O FORMUL 3 MG MG 2+ FORMUL 4 HOH *111(H2 O) HELIX 1 AA1 ALA A 1320 CYS A 1335 1 16 HELIX 2 AA2 GLU A 1336 ARG A 1342 5 7 HELIX 3 AA3 ASP A 1352 ILE A 1357 1 6 HELIX 4 AA4 ASP A 1362 ALA A 1372 1 11 HELIX 5 AA5 SER A 1377 THR A 1396 1 20 HELIX 6 AA6 SER A 1401 ASN A 1435 1 35 SITE 1 AC1 6 PRO A1340 VAL A1345 TYR A1350 TYR A1395 SITE 2 AC1 6 HOH A1613 HOH A1657 CRYST1 61.014 91.260 24.126 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016390 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010958 0.000000 0.00000 SCALE3 0.000000 0.000000 0.041449 0.00000