HEADER TRANSPORT PROTEIN 10-NOV-15 5EOH TITLE CRYSTAL STRUCTURE OF MURINE NEUROGLOBIN AT 270 MPA PRESSURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROGLOBIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: NGB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS GLOBIN, OXYGEN STORAGE-TRANSPORTER, TRANSPORT PROTEIN, HPMX EXPDTA X-RAY DIFFRACTION AUTHOR N.COLLOC'H,E.GIRARD,B.VALLONE,T.PRANGE REVDAT 4 10-JAN-24 5EOH 1 REMARK REVDAT 3 28-JUL-21 5EOH 1 KEYWDS REVDAT 2 31-MAY-17 5EOH 1 JRNL REVDAT 1 19-OCT-16 5EOH 0 JRNL AUTH N.COLLOC'H,S.SACQUIN-MORA,G.AVELLA,A.C.DHAUSSY,T.PRANGE, JRNL AUTH 2 B.VALLONE,E.GIRARD JRNL TITL DETERMINANTS OF NEUROGLOBIN PLASTICITY HIGHLIGHTED BY JOINT JRNL TITL 2 COARSE-GRAINED SIMULATIONS AND HIGH PRESSURE JRNL TITL 3 CRYSTALLOGRAPHY. JRNL REF SCI REP V. 7 1858 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28500341 JRNL DOI 10.1038/S41598-017-02097-1 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 12703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 662 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 910 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1172 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : 0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.431 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1281 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1207 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1748 ; 2.010 ; 2.028 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2777 ; 1.975 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 147 ; 5.778 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 57 ;35.262 ;22.105 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 219 ;16.351 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;12.846 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 187 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1416 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 308 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 591 ; 3.337 ; 2.834 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 590 ; 3.337 ; 2.825 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 737 ; 4.975 ; 4.219 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5EOH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000214770. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : CRISTAL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.4540 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13380 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09300 REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.47300 REMARK 200 R SYM FOR SHELL (I) : 0.47300 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0, DM 6.2 REMARK 200 STARTING MODEL: 4O4T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 0.1 M MES, 10 REMARK 280 % DIOXANE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 43.78000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.27639 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 37.87867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 43.78000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.27639 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 37.87867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 43.78000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.27639 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 37.87867 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 43.78000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.27639 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 37.87867 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 43.78000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.27639 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 37.87867 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 43.78000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.27639 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 37.87867 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 50.55279 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 75.75733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 50.55279 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 75.75733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 50.55279 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 75.75733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 50.55279 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 75.75733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 50.55279 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 75.75733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 50.55279 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 75.75733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 380 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 45 66.49 34.69 REMARK 500 ASP A 149 122.54 18.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 64 NE2 REMARK 620 2 HEM A 201 NA 85.5 REMARK 620 3 HEM A 201 NB 89.4 85.9 REMARK 620 4 HEM A 201 NC 95.5 178.9 93.7 REMARK 620 5 HEM A 201 ND 90.2 94.3 179.6 86.2 REMARK 620 6 HIS A 96 NE2 173.3 87.8 90.3 91.3 90.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EET RELATED DB: PDB REMARK 900 5EET NEUROGLOBIN AT AMBIENT PRESSURE DBREF 5EOH A 3 150 UNP Q9ER97 NGB_MOUSE 3 150 SEQADV 5EOH SER A 55 UNP Q9ER97 CYS 55 ENGINEERED MUTATION SEQADV 5EOH SER A 120 UNP Q9ER97 CYS 120 ENGINEERED MUTATION SEQRES 1 A 148 ARG PRO GLU SER GLU LEU ILE ARG GLN SER TRP ARG VAL SEQRES 2 A 148 VAL SER ARG SER PRO LEU GLU HIS GLY THR VAL LEU PHE SEQRES 3 A 148 ALA ARG LEU PHE ALA LEU GLU PRO SER LEU LEU PRO LEU SEQRES 4 A 148 PHE GLN TYR ASN GLY ARG GLN PHE SER SER PRO GLU ASP SEQRES 5 A 148 SER LEU SER SER PRO GLU PHE LEU ASP HIS ILE ARG LYS SEQRES 6 A 148 VAL MET LEU VAL ILE ASP ALA ALA VAL THR ASN VAL GLU SEQRES 7 A 148 ASP LEU SER SER LEU GLU GLU TYR LEU THR SER LEU GLY SEQRES 8 A 148 ARG LYS HIS ARG ALA VAL GLY VAL ARG LEU SER SER PHE SEQRES 9 A 148 SER THR VAL GLY GLU SER LEU LEU TYR MET LEU GLU LYS SEQRES 10 A 148 SER LEU GLY PRO ASP PHE THR PRO ALA THR ARG THR ALA SEQRES 11 A 148 TRP SER ARG LEU TYR GLY ALA VAL VAL GLN ALA MET SER SEQRES 12 A 148 ARG GLY TRP ASP GLY HET HEM A 201 43 HET SO4 A 202 5 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SO4 SULFATE ION HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *81(H2 O) HELIX 1 AA1 ARG A 3 ARG A 18 1 16 HELIX 2 AA2 SER A 19 GLU A 35 1 17 HELIX 3 AA3 PRO A 36 PHE A 42 5 7 HELIX 4 AA4 SER A 51 SER A 57 1 7 HELIX 5 AA5 SER A 58 ASN A 78 1 21 HELIX 6 AA6 ASP A 81 SER A 84 5 4 HELIX 7 AA7 LEU A 85 GLY A 100 1 16 HELIX 8 AA8 SER A 104 GLY A 122 1 19 HELIX 9 AA9 PRO A 123 PHE A 125 5 3 HELIX 10 AB1 THR A 126 ARG A 146 1 21 HELIX 11 AB2 GLY A 147 ASP A 149 5 3 LINK NE2 HIS A 64 FE HEM A 201 1555 1555 2.01 LINK NE2 HIS A 96 FE HEM A 201 1555 1555 2.06 SITE 1 AC1 16 LEU A 41 PHE A 42 TYR A 44 HIS A 64 SITE 2 AC1 16 LYS A 67 VAL A 68 VAL A 71 TYR A 88 SITE 3 AC1 16 LEU A 92 LYS A 95 HIS A 96 PHE A 106 SITE 4 AC1 16 VAL A 109 HOH A 311 HOH A 313 HOH A 324 SITE 1 AC2 5 SER A 19 PRO A 20 LEU A 21 GLU A 22 SITE 2 AC2 5 ARG A 66 CRYST1 87.560 87.560 113.636 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011421 0.006594 0.000000 0.00000 SCALE2 0.000000 0.013188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008800 0.00000 TER 1201 GLY A 150 HETATM 1202 CHA HEM A 201 19.263 57.909 36.183 1.00 19.41 C HETATM 1203 CHB HEM A 201 14.877 57.145 34.357 1.00 17.83 C HETATM 1204 CHC HEM A 201 15.621 52.523 35.275 1.00 17.97 C HETATM 1205 CHD HEM A 201 20.203 53.199 36.214 1.00 18.70 C HETATM 1206 C1A HEM A 201 18.025 58.077 35.658 1.00 18.94 C HETATM 1207 C2A HEM A 201 17.458 59.354 35.340 1.00 19.79 C HETATM 1208 C3A HEM A 201 16.239 59.131 34.801 1.00 18.42 C HETATM 1209 C4A HEM A 201 16.027 57.747 34.821 1.00 18.01 C HETATM 1210 CMA HEM A 201 15.270 60.170 34.316 1.00 20.47 C HETATM 1211 CAA HEM A 201 18.104 60.717 35.505 1.00 20.69 C HETATM 1212 CBA HEM A 201 18.642 61.158 34.146 1.00 21.46 C HETATM 1213 CGA HEM A 201 19.815 60.363 33.679 1.00 24.45 C HETATM 1214 O1A HEM A 201 20.892 60.311 34.365 1.00 25.77 O HETATM 1215 O2A HEM A 201 19.727 59.714 32.592 1.00 21.42 O HETATM 1216 C1B HEM A 201 14.687 55.780 34.450 1.00 18.66 C HETATM 1217 C2B HEM A 201 13.444 55.138 34.190 1.00 20.92 C HETATM 1218 C3B HEM A 201 13.622 53.812 34.426 1.00 21.27 C HETATM 1219 C4B HEM A 201 15.001 53.677 34.953 1.00 18.72 C HETATM 1220 CMB HEM A 201 12.151 55.717 33.640 1.00 22.44 C HETATM 1221 CAB HEM A 201 12.447 52.908 34.273 1.00 24.35 C HETATM 1222 CBB HEM A 201 12.213 51.878 35.007 1.00 31.05 C HETATM 1223 C1C HEM A 201 16.897 52.242 35.577 1.00 19.13 C HETATM 1224 C2C HEM A 201 17.416 50.995 35.956 1.00 20.04 C HETATM 1225 C3C HEM A 201 18.739 51.207 36.213 1.00 18.99 C HETATM 1226 C4C HEM A 201 19.010 52.578 36.032 1.00 17.72 C HETATM 1227 CMC HEM A 201 16.695 49.649 35.979 1.00 22.84 C HETATM 1228 CAC HEM A 201 19.779 50.290 36.578 1.00 22.27 C HETATM 1229 CBC HEM A 201 19.615 48.970 36.780 1.00 31.17 C HETATM 1230 C1D HEM A 201 20.286 54.569 36.251 1.00 18.53 C HETATM 1231 C2D HEM A 201 21.521 55.235 36.655 1.00 20.03 C HETATM 1232 C3D HEM A 201 21.246 56.556 36.669 1.00 21.97 C HETATM 1233 C4D HEM A 201 19.856 56.677 36.310 1.00 19.82 C HETATM 1234 CMD HEM A 201 22.857 54.565 36.967 1.00 21.26 C HETATM 1235 CAD HEM A 201 22.239 57.681 37.058 1.00 23.60 C HETATM 1236 CBD HEM A 201 21.849 57.981 38.477 1.00 26.37 C HETATM 1237 CGD HEM A 201 22.790 58.937 39.236 1.00 35.51 C HETATM 1238 O1D HEM A 201 22.716 60.178 39.049 1.00 39.17 O HETATM 1239 O2D HEM A 201 23.586 58.496 40.072 1.00 32.24 O HETATM 1240 NA HEM A 201 17.101 57.111 35.324 1.00 15.80 N HETATM 1241 NB HEM A 201 15.530 54.883 34.920 1.00 18.44 N HETATM 1242 NC HEM A 201 17.869 53.183 35.712 1.00 18.27 N HETATM 1243 ND HEM A 201 19.301 55.448 36.025 1.00 17.81 N HETATM 1244 FE HEM A 201 17.491 55.180 35.501 1.00 18.07 FE HETATM 1245 S SO4 A 202 27.669 48.795 22.127 0.60 28.53 S HETATM 1246 O1 SO4 A 202 27.856 50.146 21.503 0.60 31.05 O HETATM 1247 O2 SO4 A 202 26.461 48.035 21.580 0.60 27.08 O HETATM 1248 O3 SO4 A 202 27.673 49.210 23.543 0.60 24.41 O HETATM 1249 O4 SO4 A 202 28.846 47.950 21.724 0.60 28.08 O HETATM 1250 O HOH A 301 2.945 62.758 28.622 1.00 40.87 O HETATM 1251 O HOH A 302 4.020 57.076 19.554 0.50 27.63 O HETATM 1252 O HOH A 303 30.017 32.443 38.738 1.00 48.69 O HETATM 1253 O HOH A 304 12.229 36.118 28.559 1.00 40.03 O HETATM 1254 O HOH A 305 1.561 52.365 30.074 1.00 28.01 O HETATM 1255 O HOH A 306 25.349 55.803 45.985 1.00 41.48 O HETATM 1256 O HOH A 307 17.325 64.105 24.548 1.00 32.90 O HETATM 1257 O HOH A 308 20.571 25.798 32.158 1.00 34.44 O HETATM 1258 O HOH A 309 10.337 61.910 27.781 1.00 18.37 O HETATM 1259 O HOH A 310 4.742 52.019 23.315 1.00 36.94 O HETATM 1260 O HOH A 311 21.625 60.054 30.742 1.00 23.99 O HETATM 1261 O HOH A 312 5.299 56.858 16.231 1.00 24.10 O HETATM 1262 O HOH A 313 23.596 62.644 39.073 1.00 33.55 O HETATM 1263 O HOH A 314 9.010 52.783 18.083 1.00 24.89 O HETATM 1264 O HOH A 315 28.515 51.117 27.721 1.00 32.91 O HETATM 1265 O HOH A 316 3.476 45.885 23.431 1.00 42.18 O HETATM 1266 O HOH A 317 24.747 47.869 53.492 1.00 50.66 O HETATM 1267 O HOH A 318 26.736 49.666 47.707 1.00 37.32 O HETATM 1268 O HOH A 319 13.258 63.638 26.911 1.00 28.21 O HETATM 1269 O HOH A 320 18.626 42.831 47.549 1.00 42.01 O HETATM 1270 O HOH A 321 5.996 54.428 36.730 1.00 43.66 O HETATM 1271 O HOH A 322 17.558 54.616 28.835 1.00 18.55 O HETATM 1272 O HOH A 323 9.382 50.669 21.928 1.00 20.30 O HETATM 1273 O HOH A 324 24.895 56.146 39.707 1.00 30.09 O HETATM 1274 O HOH A 325 2.283 49.530 23.907 1.00 29.81 O HETATM 1275 O HOH A 326 5.853 54.349 17.928 1.00 31.42 O HETATM 1276 O HOH A 327 22.044 34.069 41.248 1.00 48.89 O HETATM 1277 O HOH A 328 24.960 59.157 23.984 1.00 29.61 O HETATM 1278 O HOH A 329 31.490 45.093 36.925 1.00 46.76 O HETATM 1279 O HOH A 330 31.255 42.480 31.428 1.00 48.62 O HETATM 1280 O HOH A 331 29.586 37.744 32.375 1.00 35.88 O HETATM 1281 O HOH A 332 4.296 54.202 34.315 1.00 46.31 O HETATM 1282 O HOH A 333 22.381 44.486 47.677 1.00 45.70 O HETATM 1283 O HOH A 334 13.042 37.372 16.638 1.00 45.13 O HETATM 1284 O HOH A 335 13.633 52.956 23.678 1.00 32.69 O HETATM 1285 O HOH A 336 18.224 28.623 38.191 1.00 35.49 O HETATM 1286 O HOH A 337 14.038 26.960 37.014 1.00 44.91 O HETATM 1287 O HOH A 338 13.007 39.718 38.964 1.00 40.36 O HETATM 1288 O HOH A 339 3.124 58.607 32.517 1.00 38.11 O HETATM 1289 O HOH A 340 20.976 52.201 19.954 1.00 17.74 O HETATM 1290 O HOH A 341 30.215 37.310 42.513 1.00 41.96 O HETATM 1291 O HOH A 342 19.722 46.702 19.137 1.00 18.04 O HETATM 1292 O HOH A 343 9.299 64.272 19.462 1.00 37.72 O HETATM 1293 O HOH A 344 27.180 49.803 29.371 1.00 28.77 O HETATM 1294 O HOH A 345 15.534 62.852 20.756 1.00 44.31 O HETATM 1295 O HOH A 346 20.533 60.881 17.389 1.00 40.89 O HETATM 1296 O HOH A 347 8.933 46.554 41.143 1.00 48.01 O HETATM 1297 O HOH A 348 20.825 43.140 19.976 1.00 25.28 O HETATM 1298 O HOH A 349 8.578 63.383 33.941 1.00 49.89 O HETATM 1299 O HOH A 350 15.525 37.581 44.431 1.00 39.68 O HETATM 1300 O HOH A 351 18.478 41.109 22.769 1.00 29.80 O HETATM 1301 O HOH A 352 29.864 48.201 36.212 1.00 39.06 O HETATM 1302 O HOH A 353 6.024 53.512 43.430 1.00 43.73 O HETATM 1303 O HOH A 354 5.353 55.332 24.980 1.00 40.21 O HETATM 1304 O HOH A 355 9.881 41.434 36.801 1.00 38.93 O HETATM 1305 O HOH A 356 21.898 30.185 20.769 1.00 59.11 O HETATM 1306 O HOH A 357 6.549 58.303 41.394 1.00 51.20 O HETATM 1307 O HOH A 358 16.645 24.756 32.640 1.00 38.00 O HETATM 1308 O HOH A 359 20.179 36.926 18.927 1.00 44.55 O HETATM 1309 O HOH A 360 25.289 50.369 19.614 0.50 20.28 O HETATM 1310 O HOH A 361 4.567 51.424 42.557 1.00 47.23 O HETATM 1311 O HOH A 362 12.217 52.548 21.747 1.00 34.84 O HETATM 1312 O HOH A 363 8.211 63.153 40.903 1.00 55.29 O HETATM 1313 O HOH A 364 12.416 65.174 23.370 1.00 45.76 O HETATM 1314 O HOH A 365 27.697 47.169 30.314 1.00 29.25 O HETATM 1315 O HOH A 366 20.101 64.026 36.968 1.00 47.13 O HETATM 1316 O HOH A 367 6.554 50.788 21.538 1.00 32.33 O HETATM 1317 O HOH A 368 12.198 39.663 36.252 1.00 46.85 O HETATM 1318 O HOH A 369 19.121 60.884 45.475 1.00 47.71 O HETATM 1319 O HOH A 370 14.304 24.585 35.369 1.00 48.33 O HETATM 1320 O HOH A 371 22.706 50.990 19.201 0.50 17.59 O HETATM 1321 O HOH A 372 11.301 51.832 19.450 1.00 37.12 O HETATM 1322 O HOH A 373 9.680 33.914 18.264 0.50 24.74 O HETATM 1323 O HOH A 374 16.384 26.610 38.356 1.00 36.80 O HETATM 1324 O HOH A 375 1.144 45.596 22.601 1.00 31.04 O HETATM 1325 O HOH A 376 21.676 38.069 46.975 1.00 48.48 O HETATM 1326 O HOH A 377 16.421 40.275 47.846 1.00 51.74 O HETATM 1327 O HOH A 378 19.432 64.782 33.725 1.00 48.69 O HETATM 1328 O HOH A 379 4.153 53.953 20.112 1.00 44.71 O HETATM 1329 O HOH A 380 0.025 50.481 24.965 0.33 34.96 O HETATM 1330 O HOH A 381 16.724 64.050 36.414 1.00 44.05 O CONECT 517 1244 CONECT 784 1244 CONECT 1202 1206 1233 CONECT 1203 1209 1216 CONECT 1204 1219 1223 CONECT 1205 1226 1230 CONECT 1206 1202 1207 1240 CONECT 1207 1206 1208 1211 CONECT 1208 1207 1209 1210 CONECT 1209 1203 1208 1240 CONECT 1210 1208 CONECT 1211 1207 1212 CONECT 1212 1211 1213 CONECT 1213 1212 1214 1215 CONECT 1214 1213 CONECT 1215 1213 CONECT 1216 1203 1217 1241 CONECT 1217 1216 1218 1220 CONECT 1218 1217 1219 1221 CONECT 1219 1204 1218 1241 CONECT 1220 1217 CONECT 1221 1218 1222 CONECT 1222 1221 CONECT 1223 1204 1224 1242 CONECT 1224 1223 1225 1227 CONECT 1225 1224 1226 1228 CONECT 1226 1205 1225 1242 CONECT 1227 1224 CONECT 1228 1225 1229 CONECT 1229 1228 CONECT 1230 1205 1231 1243 CONECT 1231 1230 1232 1234 CONECT 1232 1231 1233 1235 CONECT 1233 1202 1232 1243 CONECT 1234 1231 CONECT 1235 1232 1236 CONECT 1236 1235 1237 CONECT 1237 1236 1238 1239 CONECT 1238 1237 CONECT 1239 1237 CONECT 1240 1206 1209 1244 CONECT 1241 1216 1219 1244 CONECT 1242 1223 1226 1244 CONECT 1243 1230 1233 1244 CONECT 1244 517 784 1240 1241 CONECT 1244 1242 1243 CONECT 1245 1246 1247 1248 1249 CONECT 1246 1245 CONECT 1247 1245 CONECT 1248 1245 CONECT 1249 1245 MASTER 351 0 2 11 0 0 6 6 1301 1 51 12 END