HEADER VIRAL PROTEIN/IMMUNE SYSTEM 10-NOV-15 5EOR TITLE STRUCTURE OF THE MURINE ANTIBODY FAB 8E3 BOUND TO THE VACCINIA VIRUS TITLE 2 A27 PEPTIDE 101-110 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI VACCINIA VIRUS A27 ANTIBODY 8E3 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: ANTI VACCINIA VIRUS A27 ANTIBODY 8E3 LIGHT CHAIN; COMPND 6 CHAIN: L; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: PROTEIN A27; COMPND 9 CHAIN: A; COMPND 10 FRAGMENT: UNP RESIDUES 101-110; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 6 ORGANISM_TAXID: 10090; SOURCE 7 MOL_ID: 3; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: VACCINIA VIRUS; SOURCE 10 ORGANISM_COMMON: VACV; SOURCE 11 ORGANISM_TAXID: 10254 KEYWDS ANTIBODY, FAB, VACCINIA VIRUS, NEUTRALIZING, LINEAR EPITOPE, VIRAL KEYWDS 2 PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.H.MATHO,D.M.ZAJONC REVDAT 5 27-SEP-23 5EOR 1 REMARK REVDAT 4 13-APR-22 5EOR 1 JRNL REMARK REVDAT 3 27-APR-16 5EOR 1 JRNL REVDAT 2 23-MAR-16 5EOR 1 JRNL REVDAT 1 02-MAR-16 5EOR 0 JRNL AUTH T.KAEVER,M.H.MATHO,X.MENG,L.CRICKARD,A.SCHLOSSMAN,Y.XIANG, JRNL AUTH 2 S.CROTTY,B.PETERS,D.M.ZAJONC JRNL TITL LINEAR EPITOPES IN VACCINIA VIRUS A27 ARE TARGETS OF JRNL TITL 2 PROTECTIVE ANTIBODIES INDUCED BY VACCINATION AGAINST JRNL TITL 3 SMALLPOX. JRNL REF J.VIROL. V. 90 4334 2016 JRNL REFN ESSN 1098-5514 JRNL PMID 26889021 JRNL DOI 10.1128/JVI.02878-15 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0104 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 35641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1885 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.27 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4700 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 229 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3330 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.192 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.657 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3414 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4658 ; 1.292 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 436 ; 6.087 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;37.440 ;24.252 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 533 ;13.485 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;16.488 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 533 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2560 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5EOR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000214232. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35641 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 55.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.49400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2NTF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 3000, 200 MM MAGNESIUM REMARK 280 CHLORIDE, 100 MM CACODYLATE PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.24667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 132.49333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 99.37000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 165.61667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.12333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.24667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 132.49333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 165.61667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 99.37000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.12333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR H 134 REMARK 465 ASP A 101 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN H 2 CG CD OE1 NE2 REMARK 470 LYS H 118 CG CD CE NZ REMARK 470 GLN L 2 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD2 HIS H 167 CE MET L 182 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 107 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 16 -7.37 73.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 513 DISTANCE = 5.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA H 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR H 33 O REMARK 620 2 ILE H 52 O 97.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA H 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EOQ RELATED DB: PDB DBREF 5EOR H 2 216 PDB 5EOR 5EOR 2 216 DBREF 5EOR L 2 218 PDB 5EOR 5EOR 2 218 DBREF 5EOR A 101 110 PDB 5EOR 5EOR 101 110 SEQRES 1 H 215 GLN VAL GLN LEU LYS GLN SER GLY PRO GLY LEU VAL GLN SEQRES 2 H 215 PRO SER GLN SER LEU SER ILE THR CYS THR VAL SER GLY SEQRES 3 H 215 LEU SER LEU THR SER TYR GLY VAL HIS TRP VAL ARG GLN SEQRES 4 H 215 SER PRO GLY LYS GLY LEU GLU TRP LEU GLY VAL ILE TRP SEQRES 5 H 215 SER GLY GLY ASN THR ASP TYR ASN ALA ALA PHE ILE SER SEQRES 6 H 215 ARG LEU SER ILE SER LYS ASP ASN SER LYS ASN GLN VAL SEQRES 7 H 215 PHE PHE LYS MET ASN SER LEU ARG ALA ASP ASP THR ALA SEQRES 8 H 215 ILE TYR TYR CYS ALA ILE TYR TYR ARG TYR GLY ALA TYR SEQRES 9 H 215 TRP GLY GLN GLY THR LEU VAL THR VAL SER ALA ALA LYS SEQRES 10 H 215 THR THR ALA PRO SER VAL TYR PRO LEU ALA PRO VAL CYS SEQRES 11 H 215 GLY ASP THR THR GLY SER SER VAL THR LEU GLY CYS LEU SEQRES 12 H 215 VAL LYS GLY TYR PHE PRO LYS PRO VAL THR LEU THR TRP SEQRES 13 H 215 ASN SER GLY SER LEU SER SER GLY VAL HIS THR PHE PRO SEQRES 14 H 215 ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SER SEQRES 15 H 215 VAL THR VAL THR SER SER THR TRP PRO SER GLN SER ILE SEQRES 16 H 215 THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL SEQRES 17 H 215 ASP LYS LYS ILE GLU PRO ARG SEQRES 1 L 217 GLN LEU VAL LEU THR GLN SER SER SER ALA SER PHE SER SEQRES 2 L 217 LEU GLY ALA SER ALA LYS LEU THR CYS THR LEU SER SER SEQRES 3 L 217 GLN HIS SER THR TYR THR ILE ASP TRP TYR GLN GLN GLN SEQRES 4 L 217 PRO LEU LYS PRO PRO LYS TYR VAL MET GLU LEU ARG ARG SEQRES 5 L 217 ASP GLY SER HIS ASN THR GLY ASP GLY ILE PRO ASP ARG SEQRES 6 L 217 PHE SER GLY SER SER SER GLY ALA ASP ARG TYR LEU SER SEQRES 7 L 217 ILE SER ASN ILE GLN PRO GLU ASP GLU ALA ILE TYR ILE SEQRES 8 L 217 CYS GLY VAL GLY ASP THR ILE LYS GLU GLN PHE VAL TYR SEQRES 9 L 217 VAL PHE GLY GLY GLY THR LYS VAL THR VAL LEU GLY GLN SEQRES 10 L 217 PRO LYS SER THR PRO THR LEU THR VAL PHE PRO PRO SER SEQRES 11 L 217 SER GLU GLU LEU LYS GLU ASN LYS ALA THR LEU VAL CYS SEQRES 12 L 217 LEU ILE SER ASN PHE SER PRO SER GLY VAL THR VAL ALA SEQRES 13 L 217 TRP LYS ALA ASN GLY THR PRO ILE THR GLN GLY VAL ASP SEQRES 14 L 217 THR SER ASN PRO THR LYS GLU GLY ASN LYS PHE MET ALA SEQRES 15 L 217 SER SER PHE LEU HIS LEU THR SER ASP GLN TRP ARG SER SEQRES 16 L 217 HIS ASN SER PHE THR CYS GLN VAL THR HIS GLU GLY ASP SEQRES 17 L 217 THR VAL GLU LYS SER LEU SER PRO ALA SEQRES 1 A 10 ASP VAL GLN THR GLY ARG ARG PRO TYR GLU HET NA H 301 1 HETNAM NA SODIUM ION FORMUL 4 NA NA 1+ FORMUL 5 HOH *206(H2 O) HELIX 1 AA1 ARG H 87 THR H 91 5 5 HELIX 2 AA2 SER H 159 SER H 161 5 3 HELIX 3 AA3 PRO H 203 SER H 206 5 4 HELIX 4 AA4 SER L 27 SER L 30 5 4 HELIX 5 AA5 GLN L 84 GLU L 88 5 5 HELIX 6 AA6 SER L 131 LYS L 136 1 6 HELIX 7 AA7 SER L 191 HIS L 197 1 7 SHEET 1 AA1 4 GLN H 4 SER H 8 0 SHEET 2 AA1 4 LEU H 19 SER H 26 -1 O THR H 22 N SER H 8 SHEET 3 AA1 4 GLN H 78 MET H 83 -1 O MET H 83 N LEU H 19 SHEET 4 AA1 4 LEU H 68 ASP H 73 -1 N SER H 71 O PHE H 80 SHEET 1 AA2 6 LEU H 12 VAL H 13 0 SHEET 2 AA2 6 THR H 110 VAL H 114 1 O THR H 113 N VAL H 13 SHEET 3 AA2 6 ALA H 92 TYR H 100 -1 N ALA H 92 O VAL H 112 SHEET 4 AA2 6 VAL H 35 GLN H 40 -1 N VAL H 38 O TYR H 95 SHEET 5 AA2 6 LEU H 46 ILE H 52 -1 O GLU H 47 N ARG H 39 SHEET 6 AA2 6 THR H 58 TYR H 60 -1 O ASP H 59 N VAL H 51 SHEET 1 AA3 4 LEU H 12 VAL H 13 0 SHEET 2 AA3 4 THR H 110 VAL H 114 1 O THR H 113 N VAL H 13 SHEET 3 AA3 4 ALA H 92 TYR H 100 -1 N ALA H 92 O VAL H 112 SHEET 4 AA3 4 GLY H 103 TRP H 106 -1 O TYR H 105 N ILE H 98 SHEET 1 AA4 4 SER H 123 LEU H 127 0 SHEET 2 AA4 4 SER H 138 TYR H 148 -1 O GLY H 142 N LEU H 127 SHEET 3 AA4 4 LEU H 177 THR H 187 -1 O LEU H 180 N VAL H 145 SHEET 4 AA4 4 VAL H 166 GLN H 174 -1 N HIS H 167 O SER H 183 SHEET 1 AA5 3 THR H 154 TRP H 157 0 SHEET 2 AA5 3 THR H 197 HIS H 202 -1 O ASN H 199 N THR H 156 SHEET 3 AA5 3 THR H 207 LYS H 212 -1 O LYS H 211 N CYS H 198 SHEET 1 AA6 4 LEU L 5 THR L 6 0 SHEET 2 AA6 4 ALA L 19 LEU L 25 -1 O THR L 24 N THR L 6 SHEET 3 AA6 4 ASP L 75 ILE L 80 -1 O ILE L 80 N ALA L 19 SHEET 4 AA6 4 PHE L 67 SER L 72 -1 N SER L 68 O SER L 79 SHEET 1 AA7 6 SER L 10 SER L 14 0 SHEET 2 AA7 6 THR L 111 LEU L 116 1 O THR L 114 N ALA L 11 SHEET 3 AA7 6 ALA L 89 ILE L 99 -1 N ALA L 89 O VAL L 113 SHEET 4 AA7 6 ILE L 34 GLN L 39 -1 N GLN L 39 O ILE L 90 SHEET 5 AA7 6 LYS L 46 LEU L 51 -1 O VAL L 48 N TRP L 36 SHEET 6 AA7 6 HIS L 57 THR L 59 -1 O ASN L 58 N GLU L 50 SHEET 1 AA8 4 SER L 10 SER L 14 0 SHEET 2 AA8 4 THR L 111 LEU L 116 1 O THR L 114 N ALA L 11 SHEET 3 AA8 4 ALA L 89 ILE L 99 -1 N ALA L 89 O VAL L 113 SHEET 4 AA8 4 GLN L 102 PHE L 107 -1 O VAL L 106 N VAL L 95 SHEET 1 AA9 4 THR L 124 PHE L 128 0 SHEET 2 AA9 4 LYS L 139 PHE L 149 -1 O LEU L 145 N THR L 126 SHEET 3 AA9 4 LYS L 180 THR L 190 -1 O ALA L 183 N ILE L 146 SHEET 4 AA9 4 VAL L 169 THR L 171 -1 N ASP L 170 O PHE L 186 SHEET 1 AB1 4 THR L 124 PHE L 128 0 SHEET 2 AB1 4 LYS L 139 PHE L 149 -1 O LEU L 145 N THR L 126 SHEET 3 AB1 4 LYS L 180 THR L 190 -1 O ALA L 183 N ILE L 146 SHEET 4 AB1 4 THR L 175 GLU L 177 -1 N GLU L 177 O LYS L 180 SHEET 1 AB2 4 THR L 163 ILE L 165 0 SHEET 2 AB2 4 THR L 155 ALA L 160 -1 N ALA L 160 O THR L 163 SHEET 3 AB2 4 PHE L 200 HIS L 206 -1 O GLN L 203 N ALA L 157 SHEET 4 AB2 4 ASP L 209 LEU L 215 -1 O VAL L 211 N VAL L 204 SSBOND 1 CYS H 23 CYS H 96 1555 1555 2.13 SSBOND 2 CYS H 143 CYS H 198 1555 1555 2.08 SSBOND 3 CYS L 23 CYS L 93 1555 1555 2.11 SSBOND 4 CYS L 144 CYS L 202 1555 1555 2.09 LINK O TYR H 33 NA NA H 301 1555 1555 2.68 LINK O ILE H 52 NA NA H 301 1555 1555 3.16 CISPEP 1 ARG H 101 TYR H 102 0 1.03 CISPEP 2 PHE H 149 PRO H 150 0 -2.15 CISPEP 3 LYS H 151 PRO H 152 0 5.84 CISPEP 4 TRP H 191 PRO H 192 0 8.53 CISPEP 5 SER L 150 PRO L 151 0 -0.61 SITE 1 AC1 5 LEU H 30 TYR H 33 ILE H 52 TRP H 53 SITE 2 AC1 5 LYS H 72 CRYST1 118.250 118.250 198.740 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008457 0.004882 0.000000 0.00000 SCALE2 0.000000 0.009765 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005032 0.00000