HEADER TRANSFERASE 11-NOV-15 5EPE TITLE CRYSTAL STRUCTURE OF SAM-DEPENDENT METHYLTRANSFERASE FROM THIOBACILLUS TITLE 2 DENITRIFICANS IN COMPLEX WITH S-ADENOSYL-L-HOMOCYSTEINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAM-DEPENDENT METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THIOBACILLUS DENITRIFICANS; SOURCE 3 ORGANISM_TAXID: 292415; SOURCE 4 STRAIN: ATCC 25259; SOURCE 5 GENE: TBD_1076; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS SAM-DEPENDENT METHYLTRANSFERASE, PSI-BIOLOGY, S-ADENOSYL-L- KEYWDS 2 HOMOCYSTEINE, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, KEYWDS 3 NYSGRC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.LAROWE,I.G.SHABALIN,J.KUTNER,K.B.HANDING,M.STEAD,B.S.HILLERICH, AUTHOR 2 M.AHMED,R.SEIDEL,J.BONANNO,S.C.ALMO,W.MINOR,NEW YORK STRUCTURAL AUTHOR 3 GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 5 13-APR-22 5EPE 1 AUTHOR JRNL LINK REVDAT 4 04-DEC-19 5EPE 1 REMARK REVDAT 3 15-AUG-18 5EPE 1 REMARK REVDAT 2 27-SEP-17 5EPE 1 REMARK REVDAT 1 25-NOV-15 5EPE 0 JRNL AUTH C.LAROWE,I.G.SHABALIN,J.KUTNER,K.B.HANDING,W.MINOR JRNL TITL CRYSTAL STRUCTURE OF SAM-DEPENDENT METHYLTRANSFERASE FROM JRNL TITL 2 THIOBACILLUS DENITRIFICANS IN COMPLEX WITH JRNL TITL 3 S-ADENOSYL-L-HOMOCYSTEINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1266 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1794 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1893 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.577 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1973 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1867 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2683 ; 1.717 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4274 ; 0.987 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 249 ; 6.349 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;39.679 ;22.976 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 294 ;12.367 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;19.522 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 300 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2243 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 456 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 999 ; 1.106 ; 1.669 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 998 ; 1.095 ; 1.667 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1247 ; 1.767 ; 2.490 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 34 REMARK 3 ORIGIN FOR THE GROUP (A): 63.6730 71.8670 31.2230 REMARK 3 T TENSOR REMARK 3 T11: 0.0781 T22: 0.0642 REMARK 3 T33: 0.1427 T12: -0.0514 REMARK 3 T13: 0.0341 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 3.7882 L22: 1.6041 REMARK 3 L33: 2.7246 L12: -0.4259 REMARK 3 L13: 2.1227 L23: -0.1690 REMARK 3 S TENSOR REMARK 3 S11: 0.0393 S12: -0.0446 S13: 0.2147 REMARK 3 S21: 0.1221 S22: 0.0110 S23: -0.2317 REMARK 3 S31: -0.2121 S32: 0.1953 S33: -0.0502 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): 55.4600 86.7320 19.2660 REMARK 3 T TENSOR REMARK 3 T11: 0.1731 T22: 0.0998 REMARK 3 T33: 0.2409 T12: -0.0358 REMARK 3 T13: 0.0219 T23: 0.1427 REMARK 3 L TENSOR REMARK 3 L11: 14.0798 L22: 12.1664 REMARK 3 L33: 29.6195 L12: 1.6266 REMARK 3 L13: -7.0076 L23: -8.9767 REMARK 3 S TENSOR REMARK 3 S11: 0.3708 S12: 0.2108 S13: 0.6895 REMARK 3 S21: -0.3077 S22: 0.4145 S23: 0.4603 REMARK 3 S31: -0.7795 S32: -0.2298 S33: -0.7852 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 103 REMARK 3 ORIGIN FOR THE GROUP (A): 64.3140 83.2330 29.0240 REMARK 3 T TENSOR REMARK 3 T11: 0.1253 T22: 0.0763 REMARK 3 T33: 0.2578 T12: -0.0864 REMARK 3 T13: 0.0104 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 2.2749 L22: 1.8598 REMARK 3 L33: 1.8491 L12: -0.0136 REMARK 3 L13: 0.3628 L23: 0.0779 REMARK 3 S TENSOR REMARK 3 S11: -0.0783 S12: 0.0675 S13: 0.5837 REMARK 3 S21: -0.0126 S22: 0.0410 S23: -0.2517 REMARK 3 S31: -0.3284 S32: 0.2215 S33: 0.0372 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 104 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): 49.8400 78.2790 33.3680 REMARK 3 T TENSOR REMARK 3 T11: 0.0939 T22: 0.0361 REMARK 3 T33: 0.1285 T12: -0.0079 REMARK 3 T13: 0.0217 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 2.0499 L22: 2.6601 REMARK 3 L33: 1.1248 L12: 0.0867 REMARK 3 L13: -0.0363 L23: -0.4596 REMARK 3 S TENSOR REMARK 3 S11: -0.0101 S12: -0.0816 S13: 0.3840 REMARK 3 S21: 0.0521 S22: -0.0016 S23: 0.0589 REMARK 3 S31: -0.2337 S32: 0.0313 S33: 0.0118 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 145 A 159 REMARK 3 ORIGIN FOR THE GROUP (A): 50.9170 57.3660 44.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.1477 T22: 0.4789 REMARK 3 T33: 0.1121 T12: 0.1257 REMARK 3 T13: 0.0566 T23: 0.0776 REMARK 3 L TENSOR REMARK 3 L11: 9.7064 L22: 1.9564 REMARK 3 L33: 14.4785 L12: -3.0210 REMARK 3 L13: 4.3854 L23: 2.1737 REMARK 3 S TENSOR REMARK 3 S11: -0.4898 S12: -0.9908 S13: -0.0473 REMARK 3 S21: 0.3799 S22: 0.4844 S23: 0.0148 REMARK 3 S31: 0.5873 S32: 0.4074 S33: 0.0054 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 160 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): 58.9710 63.8980 36.5680 REMARK 3 T TENSOR REMARK 3 T11: 0.0810 T22: 0.0814 REMARK 3 T33: 0.0822 T12: -0.0264 REMARK 3 T13: -0.0008 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.9339 L22: 0.8199 REMARK 3 L33: 0.4364 L12: -0.5990 REMARK 3 L13: 0.0701 L23: 0.0382 REMARK 3 S TENSOR REMARK 3 S11: -0.0334 S12: -0.2290 S13: 0.1020 REMARK 3 S21: 0.1604 S22: 0.0374 S23: -0.1236 REMARK 3 S31: -0.1069 S32: 0.0758 S33: -0.0040 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 5EPE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000215238. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25623 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 0.91400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELX, DM, MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 UL OF 15 MG/ML PROTEIN IN 20 MM REMARK 280 HEPES PH 7.5, 150 MM NACL, 10% GLYCEROL, 0.1% SODIUM AZIDE AND REMARK 280 0.5 MM TCEP WERE MIXED WITH 0.2 UL OF THE MCSG II CONDITION #56 REMARK 280 (0.1M CHES PH=9.5, 20%W/V PEG 4K) AND EQUILIBRATED AGAINST 1.5 M REMARK 280 NACL SOLUTION IN 96 WELL 3 DROP CRYSTALLIZATION PLATE (SWISSCI). REMARK 280 BEFORE CRYSTALLIZATION PROTEIN WAS INCUBATED WITH 1/50 V/V OF 1 REMARK 280 MG/ML TEV SOLUTION AT 289 K FOR 3 HOURS, PH 9.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z+1/2 REMARK 290 15555 -X,Y+1/2,-Z+1/2 REMARK 290 16555 X,-Y+1/2,-Z+1/2 REMARK 290 17555 Z,X+1/2,Y+1/2 REMARK 290 18555 Z,-X+1/2,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y+1/2 REMARK 290 20555 -Z,X+1/2,-Y+1/2 REMARK 290 21555 Y,Z+1/2,X+1/2 REMARK 290 22555 -Y,Z+1/2,-X+1/2 REMARK 290 23555 Y,-Z+1/2,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X+1/2 REMARK 290 25555 X+1/2,Y,Z+1/2 REMARK 290 26555 -X+1/2,-Y,Z+1/2 REMARK 290 27555 -X+1/2,Y,-Z+1/2 REMARK 290 28555 X+1/2,-Y,-Z+1/2 REMARK 290 29555 Z+1/2,X,Y+1/2 REMARK 290 30555 Z+1/2,-X,-Y+1/2 REMARK 290 31555 -Z+1/2,-X,Y+1/2 REMARK 290 32555 -Z+1/2,X,-Y+1/2 REMARK 290 33555 Y+1/2,Z,X+1/2 REMARK 290 34555 -Y+1/2,Z,-X+1/2 REMARK 290 35555 Y+1/2,-Z,-X+1/2 REMARK 290 36555 -Y+1/2,-Z,X+1/2 REMARK 290 37555 X+1/2,Y+1/2,Z REMARK 290 38555 -X+1/2,-Y+1/2,Z REMARK 290 39555 -X+1/2,Y+1/2,-Z REMARK 290 40555 X+1/2,-Y+1/2,-Z REMARK 290 41555 Z+1/2,X+1/2,Y REMARK 290 42555 Z+1/2,-X+1/2,-Y REMARK 290 43555 -Z+1/2,-X+1/2,Y REMARK 290 44555 -Z+1/2,X+1/2,-Y REMARK 290 45555 Y+1/2,Z+1/2,X REMARK 290 46555 -Y+1/2,Z+1/2,-X REMARK 290 47555 Y+1/2,-Z+1/2,-X REMARK 290 48555 -Y+1/2,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 78.76800 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 78.76800 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 78.76800 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 78.76800 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 78.76800 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 78.76800 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 78.76800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 78.76800 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 78.76800 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 78.76800 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 78.76800 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 78.76800 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 78.76800 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 78.76800 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 78.76800 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 78.76800 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 78.76800 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 78.76800 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 78.76800 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 78.76800 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 78.76800 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 78.76800 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 78.76800 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 78.76800 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 78.76800 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 78.76800 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 78.76800 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 78.76800 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 78.76800 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 78.76800 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 78.76800 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 78.76800 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY1 37 1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY2 37 0.000000 1.000000 0.000000 78.76800 REMARK 290 SMTRY3 37 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 38 -1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY2 38 0.000000 -1.000000 0.000000 78.76800 REMARK 290 SMTRY3 38 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 39 -1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY2 39 0.000000 1.000000 0.000000 78.76800 REMARK 290 SMTRY3 39 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 40 1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY2 40 0.000000 -1.000000 0.000000 78.76800 REMARK 290 SMTRY3 40 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 41 0.000000 0.000000 1.000000 78.76800 REMARK 290 SMTRY2 41 1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY3 41 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 42 0.000000 0.000000 1.000000 78.76800 REMARK 290 SMTRY2 42 -1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY3 42 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 43 0.000000 0.000000 -1.000000 78.76800 REMARK 290 SMTRY2 43 -1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY3 43 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 44 0.000000 0.000000 -1.000000 78.76800 REMARK 290 SMTRY2 44 1.000000 0.000000 0.000000 78.76800 REMARK 290 SMTRY3 44 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 45 0.000000 1.000000 0.000000 78.76800 REMARK 290 SMTRY2 45 0.000000 0.000000 1.000000 78.76800 REMARK 290 SMTRY3 45 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 46 0.000000 -1.000000 0.000000 78.76800 REMARK 290 SMTRY2 46 0.000000 0.000000 1.000000 78.76800 REMARK 290 SMTRY3 46 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 47 0.000000 1.000000 0.000000 78.76800 REMARK 290 SMTRY2 47 0.000000 0.000000 -1.000000 78.76800 REMARK 290 SMTRY3 47 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 48 0.000000 -1.000000 0.000000 78.76800 REMARK 290 SMTRY2 48 0.000000 0.000000 -1.000000 78.76800 REMARK 290 SMTRY3 48 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 34550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 104610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -231.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 78.76800 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 78.76800 REMARK 350 BIOMT1 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 5 -1.000000 0.000000 0.000000 78.76800 REMARK 350 BIOMT3 5 0.000000 -1.000000 0.000000 78.76800 REMARK 350 BIOMT1 6 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 0.000000 -1.000000 78.76800 REMARK 350 BIOMT3 6 -1.000000 0.000000 0.000000 78.76800 REMARK 350 BIOMT1 7 -1.000000 0.000000 0.000000 78.76800 REMARK 350 BIOMT2 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 78.76800 REMARK 350 BIOMT1 8 0.000000 0.000000 -1.000000 78.76800 REMARK 350 BIOMT2 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 -1.000000 0.000000 78.76800 REMARK 350 BIOMT1 9 0.000000 -1.000000 0.000000 78.76800 REMARK 350 BIOMT2 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 9 -1.000000 0.000000 0.000000 78.76800 REMARK 350 BIOMT1 10 -1.000000 0.000000 0.000000 78.76800 REMARK 350 BIOMT2 10 0.000000 -1.000000 0.000000 78.76800 REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 11 0.000000 0.000000 -1.000000 78.76800 REMARK 350 BIOMT2 11 -1.000000 0.000000 0.000000 78.76800 REMARK 350 BIOMT3 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 0.000000 -1.000000 0.000000 78.76800 REMARK 350 BIOMT2 12 0.000000 0.000000 -1.000000 78.76800 REMARK 350 BIOMT3 12 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 583 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 601 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 80 CD OE1 OE2 REMARK 470 LYS A 89 CD CE NZ REMARK 470 GLU A 102 CG CD OE1 OE2 REMARK 470 HIS A 157 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 218 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 191 CB SER A 191 OG -0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 5 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 33 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 144 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 144 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 188 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 204 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 220 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 220 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 17 50.23 -93.63 REMARK 500 ALA A 112 35.62 -142.23 REMARK 500 ASN A 233 -74.20 -107.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 675 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A 676 DISTANCE = 6.32 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 188 OD2 REMARK 620 2 ASP A 188 OD2 0.0 REMARK 620 3 ASP A 190 OD2 45.7 45.7 REMARK 620 4 HOH A 517 O 117.5 117.5 128.2 REMARK 620 5 HOH A 525 O 92.1 92.1 103.4 127.9 REMARK 620 6 HOH A 583 O 79.7 79.7 47.6 152.1 68.8 REMARK 620 7 HOH A 583 O 79.7 79.7 47.6 152.0 68.9 0.0 REMARK 620 8 HOH A 601 O 88.0 88.0 53.2 83.2 143.2 75.1 75.1 REMARK 620 9 HOH A 601 O 88.0 88.0 53.2 83.2 143.2 75.1 75.1 0.0 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-030805 RELATED DB: TARGETTRACK DBREF 5EPE A 1 248 UNP Q3SJX0 Q3SJX0_THIDA 1 248 SEQRES 1 A 248 MSE ASP ILE PRO ARG ILE PHE ASN ILE THR GLU SER ALA SEQRES 2 A 248 HIS ARG ILE HIS ASN PRO PHE THR PRO GLU LYS LEU ALA SEQRES 3 A 248 THR LEU GLY ALA ALA LEU ARG LEU GLU ALA GLY ALA ARG SEQRES 4 A 248 VAL LEU ASP LEU GLY SER GLY SER GLY GLU MSE LEU CYS SEQRES 5 A 248 THR TRP ALA ARG ASP HIS GLY ILE VAL GLY THR GLY ILE SEQRES 6 A 248 ASP LEU SER GLN LEU PHE THR GLU GLN ALA LYS ARG ARG SEQRES 7 A 248 ALA GLU ALA LEU GLY VAL ALA GLY GLN VAL LYS PHE ILE SEQRES 8 A 248 HIS GLY ASP ALA ALA GLY TYR VAL SER ASP GLU LYS VAL SEQRES 9 A 248 ASP VAL ALA ALA CYS VAL GLY ALA SER TRP ILE ALA GLY SEQRES 10 A 248 GLY VAL ALA GLY THR ILE THR LEU LEU ALA GLN SER LEU SEQRES 11 A 248 GLU PRO GLY GLY ILE ILE LEU MSE GLY GLU PRO PHE TRP SEQRES 12 A 248 ARG LYS LEU PRO THR THR GLU ALA VAL ALA LYS ALA CYS SEQRES 13 A 248 HIS ALA ASN THR ILE SER ASP PHE LEU LEU LEU PRO GLU SEQRES 14 A 248 PHE LEU ALA SER PHE ARG LYS LEU GLY TYR ASP VAL VAL SEQRES 15 A 248 GLU MSE VAL LEU ALA ASP GLN ASP SER TRP ASP ARG TYR SEQRES 16 A 248 GLU ALA ALA LYS TRP LEU THR MSE ARG ARG TRP LEU ASP SEQRES 17 A 248 ALA ASN PRO GLU ASP GLU LEU ALA GLU GLU VAL ARG ALA SEQRES 18 A 248 GLN LEU SER SER GLU PRO GLU ARG TYR ALA THR ASN THR SEQRES 19 A 248 ARG GLU TYR LEU GLY TRP GLY VAL PHE ALA LEU MSE ALA SEQRES 20 A 248 ARG MODRES 5EPE MSE A 1 MET MODIFIED RESIDUE MODRES 5EPE MSE A 50 MET MODIFIED RESIDUE MODRES 5EPE MSE A 138 MET MODIFIED RESIDUE MODRES 5EPE MSE A 184 MET MODIFIED RESIDUE MODRES 5EPE MSE A 203 MET MODIFIED RESIDUE MODRES 5EPE MSE A 246 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 50 8 HET MSE A 138 8 HET MSE A 184 8 HET MSE A 203 8 HET MSE A 246 8 HET SAH A 301 26 HET NA A 302 1 HETNAM MSE SELENOMETHIONINE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM NA SODIUM ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 NA NA 1+ FORMUL 4 HOH *276(H2 O) HELIX 1 AA1 PRO A 4 SER A 12 1 9 HELIX 2 AA2 THR A 21 LEU A 32 1 12 HELIX 3 AA3 GLY A 48 GLY A 59 1 12 HELIX 4 AA4 SER A 68 GLY A 83 1 16 HELIX 5 AA5 ALA A 112 GLY A 117 5 6 HELIX 6 AA6 GLY A 118 GLN A 128 1 11 HELIX 7 AA7 THR A 149 CYS A 156 1 8 HELIX 8 AA8 THR A 160 PHE A 164 5 5 HELIX 9 AA9 LEU A 166 GLY A 178 1 13 HELIX 10 AB1 ASP A 188 ASN A 210 1 23 HELIX 11 AB2 LEU A 215 ASN A 233 1 19 HELIX 12 AB3 ASN A 233 TYR A 237 1 5 SHEET 1 AA1 7 VAL A 88 HIS A 92 0 SHEET 2 AA1 7 VAL A 61 ASP A 66 1 N GLY A 64 O ILE A 91 SHEET 3 AA1 7 ARG A 39 LEU A 43 1 N ASP A 42 O THR A 63 SHEET 4 AA1 7 VAL A 104 VAL A 110 1 O ALA A 108 N LEU A 41 SHEET 5 AA1 7 LEU A 130 TRP A 143 1 O GLU A 131 N VAL A 104 SHEET 6 AA1 7 LEU A 238 ALA A 247 -1 O LEU A 245 N ILE A 136 SHEET 7 AA1 7 TYR A 179 LEU A 186 -1 N ASP A 180 O MSE A 246 LINK C MSE A 1 N ASP A 2 1555 1555 1.33 LINK C GLU A 49 N MSE A 50 1555 1555 1.32 LINK C MSE A 50 N LEU A 51 1555 1555 1.32 LINK C LEU A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N GLY A 139 1555 1555 1.32 LINK C GLU A 183 N MSE A 184 1555 1555 1.33 LINK C MSE A 184 N VAL A 185 1555 1555 1.34 LINK C THR A 202 N MSE A 203 1555 1555 1.32 LINK C MSE A 203 N ARG A 204 1555 1555 1.33 LINK C LEU A 245 N MSE A 246 1555 1555 1.33 LINK C MSE A 246 N ALA A 247 1555 1555 1.33 LINK OD2 ASP A 188 NA NA A 302 1555 1555 2.64 LINK OD2 ASP A 188 NA NA A 302 1555 23555 2.67 LINK OD2 ASP A 190 NA NA A 302 1555 23555 2.50 LINK NA NA A 302 O HOH A 517 1555 32555 2.30 LINK NA NA A 302 O HOH A 525 1555 32555 2.58 LINK NA NA A 302 O HOH A 583 1555 1555 2.37 LINK NA NA A 302 O HOH A 583 1555 23555 2.37 LINK NA NA A 302 O HOH A 601 1555 1555 2.39 LINK NA NA A 302 O HOH A 601 1555 23555 2.39 SITE 1 AC1 19 ILE A 3 HIS A 17 ASN A 18 GLY A 44 SITE 2 AC1 19 GLY A 46 ASP A 66 LEU A 67 SER A 68 SITE 3 AC1 19 PHE A 71 GLY A 93 ASP A 94 ALA A 95 SITE 4 AC1 19 VAL A 110 GLY A 111 TRP A 114 ILE A 115 SITE 5 AC1 19 HOH A 423 HOH A 477 HOH A 531 SITE 1 AC2 6 ASP A 188 ASP A 190 HOH A 517 HOH A 525 SITE 2 AC2 6 HOH A 583 HOH A 601 CRYST1 157.536 157.536 157.536 90.00 90.00 90.00 F 2 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006348 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006348 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006348 0.00000 HETATM 1 N MSE A 1 68.368 85.672 46.538 1.00 86.73 N ANISOU 1 N MSE A 1 11759 9518 11674 -138 -2054 -2843 N HETATM 2 CA MSE A 1 67.998 84.265 46.856 1.00 83.77 C ANISOU 2 CA MSE A 1 11303 9549 10978 -83 -1793 -2705 C HETATM 3 C MSE A 1 67.966 83.351 45.625 1.00 72.86 C ANISOU 3 C MSE A 1 9816 8199 9667 -238 -1548 -2344 C HETATM 4 O MSE A 1 68.170 83.758 44.469 1.00 66.32 O ANISOU 4 O MSE A 1 8970 7128 9102 -380 -1542 -2185 O HETATM 5 CB MSE A 1 66.729 84.231 47.741 1.00 93.92 C ANISOU 5 CB MSE A 1 12641 11109 11937 205 -1719 -2930 C HETATM 6 CG MSE A 1 65.352 84.217 47.054 1.00102.29 C ANISOU 6 CG MSE A 1 13700 12212 12954 328 -1522 -2871 C HETATM 7 SE MSE A 1 64.045 83.050 48.017 1.00125.65 SE ANISOU 7 SE MSE A 1 16585 15754 15400 551 -1256 -2878 SE HETATM 8 CE MSE A 1 62.291 83.758 47.423 1.00118.91 C ANISOU 8 CE MSE A 1 15751 14879 14550 786 -1145 -2993 C